Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13781
Subject:
XR_001736990.1
Aligned Length:
4498
Identities:
234
Gaps:
4231

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGGAGGAGCGGGGCCGGGAGCTGCGAGGAGCCCCCCAGACGTCGCCGAGCGCGAGGGCGGGCGTGCTCGGAGTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTCGCTCGTCAGCCGCCGCCCCTCAGTCTCCGCACTTGCAGGTCCCCTCCCTCTCCGCCGGGACGCGGGAGAGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  CCGGCTCGCGGCGGGGGCGGCCAATGCGAAACTGGCTGGTGCTGCTGTGCCCGTGTGTGCTCGGGGCCGCGCTG  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CACCTCTGGCTGCGGCTGCGCTCCCCGCCGCCCGCCTGCGCCTCCGGGGCCGGCCCTGCAGATCAGTTGGCCTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  ATTTCCTCAGTGGAAATCTACTCACTATGATGTGGTAGTTGGCGTGTTGTCAGCTCGCAATAACCATGAACTTC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GAAACGTGATAAGAAGCACCTGGATGAGACATTTGCTACAGCATCCCACATTAAGTCAACGTGTGCTTGTGAAG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  TTCATAATAGGTGCTCATGGCTGTGAAGTGCCTGTGGAAGACAGGGAGGATCCTTATTCCTGTAAACTACTCAA  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CATCACAAATCCAGTTTTGAATCAGGAAATTGAAGCGTTCAGTCTGTCCGAAGACACTTCATCGGGGCTGCCTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AGGATCGAGTTGTCAGCGTGAGTTTCCGAGTTCTCTACCCCATCGTTATTACCAGTCTTGGAGTGTTCTACGAT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCCAATGATGTGGGTTTCCAGAGGAACATCACTGTCAAACTTTATCAGGCAGAACAAGAGGAGGCCCTCTTCAT  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  TGCTCGCTTCAGTCCTCCAAGCTGTGGTGTGCAGGTGAACAAGCTGTGGTACAAGCCCGTGGAACAATTCATCT  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  TACCAGAGAGCTTTGAAGGTACAATCGTGTGGGAGAGCCAAGACCTCCACGGCCTTGTGTCAAGAAATCTCCAC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  AAAGTGACAGTGAATGATGGAGGGGGAGTTCTCAGAGTCATTACAGCTGGGGAGGGTGCATTGCCTCATGAATT  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  CTTGGAAGGTGTGGAGGGAGTTGCAGGTGGTTTTATATATACTATTCAGGGACTGTGGAAACAACGAGCTTCAA  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  TTTGTTGCTGAAGACAGATGATGACTGTTACATAGACCTCGAAGCTGTATTTAATAGGATTGTCCAAAAGAATC  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TGGATGGGCCTAATTTTTGGTGGGGAAATTTCAGACTGAATTGGGCAGTTGACCGAACCGGAAAGTGGCAGGAG  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  TTGGAGTACCCGAGCCCCGCTTACCCTGCCTTTGCATGTGGGTCAGGATATGTGATCTCCAAGGACATCGTCAA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  GTGGCTGGCAAGCAACTCGGGGAGGTTAAAGACCTATCAGGGTGAAGATGTAAGCATGGGCATCTGGATGGCTG  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  CCATAGGACCTAAAAGATACCAGGACAGTCTGTGGCTGTGTGAGAAGACCTGTGAGACAGGAATGCTGTCTTCT  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  CCTCAGTATTCTCCGTGGGAACTGACGGAACTGTGGAAACTGAAGGAACGGTGCGGTGATCCTTGTCGATGTCA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  AGCAAGATAACAGGGACTTGAATTAGCAGAGTCTAAAATCAGGGCAGGCAAACGATAATCTGAGTGCAAGTCTG  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  AGGAGTCCCAGGGTTTAGCAGTAGACTGTATGGTCTTTCAAGAGAGTTCCAGACTGGCACTTTCACCCAGAACC  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  AATGCGGTGTTTCTTAATGTTTGCACAAATTTCCTTAAAAATCAACTTGTACTGTAGCATAAGAAAAGTTTTTA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  TTTATCTATTGGAAGATTATCAGAAAAATACCAAGTTATTTTATAAAAGAAAAAATATTTCTAAATCCTGATGC  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  ATTGTGGCTAATTAGTAATTCACCATTACCTATAGTTTTTGGTTAAAACTTGGCCTAGTTCAGAAATCTGTAGT  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  AGTAACTGAGAGTTTGAATTTCAACCTGGATTGCAGGATAGCTCTGTAGAGCTAATTAGGATAATTATCAGACA  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  AAAAGGAACTCACAGGAATGCTGTGTGATCATGTGATCACATATTTGAGCAGTGGTCACTTATACCAAAGTTTG  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  GGGTTTCTGGAAATAATGTCAGATTTTGTGGATCTCTGAAGTGGGCAACTTGAACTAACTTGAAGAGGAACCAA  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  TATGATTCTCAGTTCTGAACCTTGGTTTTAAAGAAGTTCATTTATATGGTAGACTAATACCCAAATTTTCTTTC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  TGCCATCTAACATAAATCCTGAAGGTCACAGTTTAGTACTCATAGTTTTTAAATGCTAAAGTTGTGTGAGTATG  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  AATAAAAGCAAATACCTCTCAGGGTTTTAGTGCCATCGGGAAGGATATTTCTAAATTTTGTTGACATTTTGAAA  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  GAATTAGTTTTGCTTTCCTCCTATCATTGCCTAATGTTTACCTAATATGAGTACATTTCAATCAAAGCTGGTTA  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TCACAGAAGAAGATATACTCAGCTTAGGTATAATTGTAGGGAAAAGCATGTGATTAATTTAAGTACTCTTAGAA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  ATAGTGCAACTGAGAAGACAGATAATAGCATATTGTTATACATAGTAGAGGATGTCTCCCCAAGTTTAAGGGAC  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  ATTTCCCAAAATGACCAACCAAATCATTTCTAGTAACCCTTTAAAATAGTAGTTTCAATAGAGAATTCCATTAA  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  AACTAGTCTTATGACAGATATTAACTGTGTTCAGATTTTATTAGGCTAGCTAGTTTCTTTCTATTTAATATTTA  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AATCTTATCATGAAATGCAGTGATGAGCTGTAAAAATAAATATGAAATAAGATCAGAAAATCATTAGTAGGTTC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  AAAGCCTTTATTATTGCTATTATGTATAAGCCTAGAAATGGTCACTTCCCAACAAAAAATACATCCCTTGTTAT  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ACTTAGGACAAGTTGTAAACCCCCTTTGTTTTGACAGTAGAATTGTTCCAGTGAATCATTTATTTCCGGTGAAC  2886

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2887  CCCAGACACGATAAGCAGTGTGGTCTTTAAATTTTATTAGTTGGTTGTCACCATCGCACTAATAGACAATCTCC  2960

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2961  ATTTTCCACAGAATAAAACTGTAATGACTTTAGGTCATTTTCCAGCTCGATTTCTCTGCCCGGCTTCTAAAATT  3034

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3035  AGAACGAAGGTGGGGAAGGATGTGATTAAGACAGATCCGATAAAGCATGCTACACATACTCTTCCCCCACCCCG  3108

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3109  TCCCCAGGCAGTAGCTTACCCTTAAAATCAAACAAACAGACCCATGGTCTCCATTTAGAATCAAACTGTTGCTA  3182

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3183  TCTAGAGACAGTTTAATGTCATAATACGAGGACTAAGCTTGACTTTGACTTTGTATTTTGCTGGGCAACTTACT  3256

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3257  TTGGGACTTTCATAGGACAACAGAAGGTCTGACACAGGAACTTTGAGAAGACGTGACAGCAATCCCTTCACCTT  3330

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3331  TTGAATTGTCATGGAGCCTATCAAAAGACAAGAAAAGTCCATTCGTTCTCTCAAATGACAGTTACCTGTAAAAC  3404

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 3405  TAGCTCATGTGATGAGACCACAGTATCATTGCAATGATAGCTGTATCTGTCTTTTTTTTTTTTTTTTTTTTGAG  3478

Query    1  ------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTCCA  50
                                    |   ||||||||||||||.||||||||||||||||||||.|..|||||..
Sbjct 3479  ACTGACTTACTTACTTACTTAAGTA---AGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAATGGTGTAATCTCGG  3549

Query   51  CTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGT  124
            ||||||||||||||.||.|.||.|||||||.|.|||||||||.|||||||||||||||||||         |||
Sbjct 3550  CTCACTGCAACCTCCGCTTCCCGGGTTCAAACAATTCTCCTGCCTCAGCCTCCTGAGTAGCT---------GGT  3614

Query  125  GCCCACCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATATTGGCCAGACTGGTCT  198
            |||||.|||||||.|..|||||.|||||||||||||||||||||.||||||.|||||.||||||||.|||||||
Sbjct 3615  GCCCATCACCACACCCAGCTAACTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCT  3688

Query  199  CGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGGAGTGAGCCACTGCG  272
            .||||||||||||||  |||.||||||.|||.||||..||||||||||||||||||.|.|..|||||| |.|||
Sbjct 3689  TGAACTCCTGACCTC--GTGATCCGCCCGCCCTGGCCCCCCAAAGTGCTGGGATTACAAGCATGAGCC-CAGCG  3759

Query  273  CCTGGC---------CATT-------------------------------------------------------  282
            ||||||         ||||                                                       
Sbjct 3760  CCTGGCTGTATCTTTCATTTTACCCAAGTCACTTTACCCAAGTAAGTAATTAGGGGAAAGCCTGAGTCTTGTAC  3833

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3834  CACCTGTTCATTTGGGGAACTGTGGGAAACGGAGCCAACGGACCTAAGTGCCCTTTGACAGTGAGTTTCATACC  3907

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3908  ATTTCAGTAGTGTATTTCTTTCTTAATCTGAATAAACCAGAATGATACTCTCAGCACAGAAGAATAAAGGGAGC  3981

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3982  GAGTCATTAACGTTTTCTTTTTAAACCTTTATGATGACTTCCTTATGAATTACTGAACGAACACTGGAATGGGA  4055

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4056  CTCAGGTATCCTGAGGACATCTCTCAACTCTGGCCTTAGTTCCCCCTCTGTAAAATTAGGGTGCCAACTAAATG  4129

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4130  ATCTACAAGGTCCCTTCCAGCGCCGCCATTCTGTAATTACATCATGTGTAACTGTATTAAACATACACAAGTGA  4203

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4204  CTGCCAGGCATGGGAATGTAACTTCCGAGTAAATGCTTTGGTTTGTTCAGAATACACTATGAACTTCTTTCCAA  4277

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4278  AGACGGGTTGTGGTAAATAGTGGATATTTTGATTATAAGAAATAGAGTTTCCTTGAAGCTTTAGCTGGAGATAC  4351

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4352  AGCAATAGTGTGGTGTTCCTACAAATATCACAGTGTATTCAAACATATTTTTCTATCAAAAATCATTTTTGTAA  4425

Query  283  ----------------------------------------------------------  282
                                                                      
Sbjct 4426  AAGCTGTGTGTTTTTATCCAACTTGTGATAATAAATGTTCTTTATTTTAGAATAAAAA  4483

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