Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13781
- Subject:
- XR_001743693.2
- Aligned Length:
- 3543
- Identities:
- 248
- Gaps:
- 3262
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GTTACAATGATTACTTCAACACCGATTAAAGTGAATTTGAGGGTGCTTATGTGACATTTAGAAGAACTGCCCAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AAAGCATTCACAAATACAGTCTAGAATTCAAACACGACGTCCAGGACATGGAGACACGGGTTAGGAAATCACTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GTATCTTAGTGGTAGGTAAATCCTAGAGAACGAATTCTTTGAAAAAAGCCAAAAATTACTCATTTGAATTTTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAACTACAGTTTCGCCGGGCTTCTTAGCGACAACTGCAGCTAAGTGTCGGGGACAGAAGAGAGACTGAAGTGGC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CCCGCAAGCCCCCTTTGGCAAAGCCCACTCCGAGACCATCCGGATCCCGACCTACACCAGAGCAAATGTCTAAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGTGAGAAGCCGCTTCACCACCCTACAGATCCGCGGTGCAGAGATTTCCCTGCTAAGGTCCTAACTCCTGAATG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGTACGGCGAGTACACCCGAAGAATCGAAAGGTACTTATCCCCCACTCAGTTCTAGAGGAAGCAGCGAGGTGGG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCAAGATGCGTGGTAAGGCCCAGGGACTCTTTGTCAACGAAGTCCGTTAAACTTTCCGCCCTCCCGGGGGCCTC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGCGGGCCAATTCCACTCACTTCTCGGAGGCTCCGGCCCAGCATGGTCCTCGTGCCCAGCCTGCCACCACAGGA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GCCAGGCAAGGGGGAAAAAGAGGTCACCGGTCGCTAGTGATGTTACATGGGCGCAGCCATCTTTAATTGTCACT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 GAGCCCTTCAACACCGAGTACTTGGATTGGTTGAATTGCAGCCCGAGGAAATGATCTTTGTAGGCGATTGGTTG 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GCGCCGCAAAGCCATCCCGGCGGCTAAGGAGAGCGGGCAGGCAAGGAGATTCCGGGCCAGGGTCGCGGCGGCAG 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TCGGCAAGCGTTCGATTCTCTGGCGTTGGATCGCGAGCGGTGTCTGCTTGTCCCGCCGAGGGCTCCCAGGACAG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGCAGGGATCTAGGGGGTTTGCGCACCTGCTTTTTAATGCCCCGCCCCCCCTTTTTTTTTTAAAGTGGAGGGGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TGAAAGTGAGGGAGGAGAATGGACAGAATACTGACTGGAACGTTAATTCGAGCATTTCATATGCGAAGAGCGGA 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 ATAACAGTTCCGTATTCTTCTTTCAGTTTCTCCATTAGATTAGCTTCATTTTCGAATGCTCCGTTTTGCATGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 TAATTTTGAAACTAGCCCGTGGTTTGGCAGAATTTGACTGAATTCAGGGGTGAGAGTTTGATCCAGTCCAAGTG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TATTTGAATTTGAGCACGCAGTTCAACCAGTGTTTACAATGGAATTTCTGAAGACTTGTGTACTTAGAAGAAAT 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 GCATGCACTGCGGTTTGCTTCTGGAGAAGCAAAGTTGTCCAAAAGCCTTCAGTTAGAAGGATTAGTACTACCTC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 TCCTAGGAGCACTGTCATGCCTGCTTGGGTGATAGATAAATATGGGAAGAATGAAGTGCTTCGATTCACTCAGA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ACATGATGATGCCTATCATACACTATCCAAATGAAGTCATTGTCAAAGTTCACGCTGCCAGTGTAAATCCTATA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 GACGTTAATATGAGAAGTGGTTATGGAGCTACAGCTTTAAATATGAAGCGTGATCCTTTACACGTGAAAATCAA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 AGGAGAAGAATTTCCTCTGACTCTGGGTCGGGATGTCTCTGGCGTGGTGATGGAATGTGGGCTTGATGTGAAAT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACTTCAAGCCTGGAGATGAGGTCTGGGCTGCAGTTCCTCCTTGGAAACAAGGCACTCTTTCAGAGTTTGTTGTA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTCAGTGGGAATGAGGTCTCTCACAAACCCAAATCACTCACTCATACTCAAGCTGCCTCTTTGCCATATGTGGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TCTCACAGCCTGGTCTGCTATAAACAAAGTTGGTGGCCTGAATGACAAGAATTGCACAGGAAAACGTGTTCTAA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 TCTTAGGCGCTTCAGGCGGAGTTGGTACTTTTGCTATACAGGTAATGAAAGCATGGGATGCTCATGTGACAGCA 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 GTTTGCTCCCAAGATGCCAGTGAACTTGTAAGGAAGCTTGGTGCAGACGATGTAATTGATTACAAATCTGGAAG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TGTGGAAGAGCAGTTGAAATCCTTAAAACCATTTGATTTTATCCTTGATAATGTTGGCGGATCCACTGAAACAT 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 GGGCTCCAGATTTTCTCAAGAAATGGTCAGGAGCCACCTATGTGACTTTGGTGACTCCTTTCCTCCTGAACATG 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 GACCGATTGGGCATAGCAGATGGCATGTTGCAGACAGGAGTCACTGTAGGTTCAAAGGCATTAAAGCATTTCTG 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GAAAGGAGTCCATTATCGCTGGGCATTTTTCATGGCCAGTGGCCCATGTTTAGATGACATTGCAGAACTGGTGG 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ATGCGGGAAAGATCCGGCCAGTTATTGAACAAACCTTTCCTTTTTCTAAAGTTCCAGAAGCCTTCCTGAAGGTG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 GAAAGAGGACACGCACGAGGAAAGACTAGACAGGGTCTCGCTGTGTCACCCAGGCTGGAGTGCAGTGGCACAAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 CACAGCTCACTGCAGCCTTGACCTTAAGCGATTCTCCTGCTTCAGCCTCTCAAGTAGGTAGGACTACAGCCTTC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 CAATGGAGCCCAAAGCTTGCCACTTTGATGTCAAATGTTTACATTTAGATATCTCTCCAATCAACCCATTGCAG 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TGTGCACTTCGAATATTCATTTACGGTAGGTCTCACTCTGTTGCCCAGGCTGAAGGGCAGTGGCACGATCACAG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 CTCACTGCAGCCTCAACCTCCCAGACTCAAGTGATCTCCCACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TGCACCACCACACCCGACTAATTTTTGTGTTTTCAATAGAGACAGGGTTTCAACATGTTGCCCAGGCTTGTCTG 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 GAACTGCTGGGTTCCAGTGATCTGCCCACTTTGACCTCCCAAAGTGCTAGGGTTACAGACGTGAGTCACTGCGC 2960
Query 1 -----------------------------------ATGGAGTCTTGCTC-TGTCACCCAGGCTGGAGTGCAATG 38
|||||||.|..||| |||||||||||||||||||||.||
Sbjct 2961 CCAGCTTCTGTGATTTTTTTTATTTTCTTTTTTAGATGGAGTTTCACTCTTGTCACCCAGGCTGGAGTGCACTG 3034
Query 39 GCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCT 112
|.|.||||||..||||||||||||||..|.|.|..||||||||.||||||||||.|||||||||||||||||||
Sbjct 3035 GTGTGATCTCAGCTCACTGCAACCTCCACCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCT 3108
Query 113 GGGATTACAGGTG-CCCACCACCACAGCTGGCTAATTTTTGTA-TTTTTAGTAGAGACTGGGTTTTACCATATT 184
|||||||||||.| ||||||||||||.|||||||||||||||| ||||||||||||||.||||||.||||..||
Sbjct 3109 GGGATTACAGGGGCCCCACCACCACACCTGGCTAATTTTTGTATTTTTTAGTAGAGACAGGGTTTCACCACGTT 3182
Query 185 GGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAGG 258
||||||.||||||..|||||||||||||||||||.|||.||.||.|||.|.|||||||||||||||||||.|||
Sbjct 3183 GGCCAGGCTGGTCCTGAACTCCTGACCTCAGGTGATCCACCCGCTTTGCCCTCCCAAAGTGCTGGGATTACAGG 3256
Query 259 -AGTGAGCCACTGC-----GCCTGGCC--ATT------------------------------------------ 282
|| |||||||||| |||.|||| |||
Sbjct 3257 CAG-GAGCCACTGCACCCAGCCCGGCCTGATTATTTTTTAAATAGATGTAGTCCACCCCAACATCTGTTGTACA 3329
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3330 CAGGTAGACCATACCTATTGTTTTTGTGAATAAAAGAAAAATACTTTCTTAAAAACATGTATTACATTGATGGT 3403
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3404 ACTCATTCATTTTTATATCTTATTCAAAAGTATTCGAAGTTGAGGGGAAAAAAATCTTTCCAAGTTGACCTTTA 3477
Query 283 ----------------------------------------------------------------- 282
Sbjct 3478 ATCATTTGTATAACATCTGCCAGTCATTCCCAGCTAAAGGAAAATCCCAACCCTGAGCTCCAAAA 3542