Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13781
Subject:
XR_002957768.1
Aligned Length:
4973
Identities:
243
Gaps:
4695

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GTTTGTCTGTGTTCGCTGATCGGTTCAGTAACAAATGTAGAAGGCGTGTTCTGGAACCTGCGTAGAGTCACAGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCCTGGAGAAGGCGCCTAGGCGCTGTCCGTAGTGCTGAAATGGTGCGTGGTGAGACCTGTCTCCCCAACACAA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GCTAGAAGACAACAAAATAGCAGCCAGGAAACGCTCTGATAAAGCTCTAGATAGCTGCCAGGTGATGCCAGAGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TTACTAGTTTTGGGACCAATTAAAGTAGCAAGATGCAGCCAGGAGTGGTGGCTTATGCCTGTAATCCCAGCACT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TTGGGAGGCCGAGGCCGAGCTCAAGGGAGCAGAACTAAGTTACATGATTCTGCTGCGGATGTATAAGCACCACT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCAATAATTTATTATCACGGTTGGAGACTTTGACTTGTCACTTTATGACTTGAAATATGGCTCCATGGTAAATG  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CCCATAAAGCTGATTTTTAAAATCTGGATATTACAGTTCTAATTCTCACTTAGTTTAAAAGGTAGAATAGGCTT  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  CTTGTTTCATAGATCATTTGTGTGAATGTTGATTTGTTATGTCATTGACATCATACACACATGCTTACATTTTG  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  AAGGTTGCTAGCGTTTCCCATTAATGCTTCTGAATTGATGCCAAAGGAAAGCATTGATTATAAATTAGGTTCCT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  TGGTATTAGTTGGTGCATGACCCTGACCCTTTTCAAGCTATATGAAAGGTAATGATGCTCTCAAAAGCCTGCAA  740

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  741  AATGGCTTATTCAGGAAAGCATAATGGATTAAAAATCCATTAGGTTCCACTTTCTTTGCTAGATGCTGAGATAC  814

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  815  AAAGATAAATGAGATTTGGTCTCTGCCCTCGAGGAGATACGTGGCAAAATAATATGGTAAGTTCTACAAAGTTC  888

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  889  TATACAAACACAGATTAATATGCTATTCATGTTTTATTAGCCATTGCCAAAGAAGGGATGAAGAACTGCAAAAA  962

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  963  GATAAAACACAGAATACTTGTACTTCAGGTCCTTGCCAATATCTACTGCCCAACTTTTACAAAAAAAATTGCTG  1036

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1037  AAAGGCATGAAATATATGAATGCCTTTCTAAAGCACATGTGGATAATCTATACTTCTGGAGCATCTATGATTTA  1110

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1111  TTTTCAGAACAATCCAAGTTATTAGAAAGGTAAATATGTTGGTGACATTGTTTAGAAGTTCCTCAAGCAGAATT  1184

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1185  GCCTTTACTATGCTTTGACATTATGCTCTCAGCTTATATACAGTAATTCTATGTGAAACAGTAGCCAGCTTACA  1258

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1259  CAACCTGCTCTATATCTACTACAGAGCTGTTACTAAAGTGTTGGTCAACATATAACTTACTATTTCTTATATAA  1332

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1333  AGATGCCCAAGAAATTTAGATTTCATAGATATATCCCCAAAAGCATTTCTTTCAATACCAGTTTAATGAATTGA  1406

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1407  ACTTTCATACCTCACTTAAATCAACCCAGGGTAAAGTGGTATGTTCTGTTCTTACACACAATGAAAATCATGTA  1480

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1481  ACTAATTAAAGTTAGCATTTATTTTAGCTACTAGGGATGCCAGAGTCAAATTAACAGCTGAAAATGAATAACTA  1554

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1555  CATAAGACCTTAAGCCTTTTATATCTTTTCTTTTTTTTTAATCACCTTAACTACTGCAATTTTGGTTTCTTAGG  1628

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1629  TAATGATAATATTATTTTCTTTTAATTATTTGTTTTAATGTGTGACCTCATGTAAATGTCCTCATAAAATCAGA  1702

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1703  AGTGGAGTAAATAAATAAATAAAGTAAATTTCTCTACTTTTTGATTATTGGGTGAGTGTATATGGTTGTTTTAT  1776

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1777  AAATTTATTCTAAATAGGATACTAAAATACAGAAAATGTATCATCTAATTAGCTATGAAGATAAAAATCTAAAC  1850

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1851  TATAATGAGGAAATATTAAAATGTCAAGATGACGAAGAAATTTTTCAGTTTATATAATTATAGATCAGCTTAAT  1924

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1925  TTCAAACCACTTTGTTACCCTATTGCTATTTTTATACTCTAAATAGTGTCCCTTATATGACTAAGACTTTTTGT  1998

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 1999  TATCTCAGAGATTGGAAGTGTTAATTGTCCACCTTGTTAGAAGACATGGTAACTATAGGAATTTAGAAAGCATG  2072

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2073  ATAGCCCAACTGTAATGAATATATTCTAGAATGAGGTTGTCACAAAGAAACTGAAAACAAGAATTTCCTCTAAC  2146

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2147  AACTGAGCTCAGGATTCTTTTCAGAGGAAAATTTAGCTTGCATAAATTCTTGCCATCTTGGCTCTAGTTGACTT  2220

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2221  CTTGCTCTCAACTTTTGCAAAGTGAGATCACCTTTACCTCTTCAACCTATGAGGCCAACATGTTACTTTCAATT  2294

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2295  TTTCAGGAAAATCTACGTCTTGTTTGGCTGAGGTTTGATTATTATTCCTTAACTAAAATATTTTAATGTAGCTG  2368

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2369  TGCTTTTTAATTTGAATATTGCTATTGATTCAAACATTGGGTAGCATATCTTTCAAATGTGAAATTTTAAAACA  2442

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2443  TGTATTAAAGACAAACATAAATTAGTTTTGGTATAACTATTTTTTAAGATTAATCCAATGCTTTTTTGGCTTTA  2516

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2517  GATGATGTTTGGTAATTAGCTATATTCAAAAGTCAACCTTTTTTTTTTTTCAAAAAATGAACTCCTATGTATAT  2590

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2591  GAGTGTTATTTTTATCTACCCATGTCTTTTTTGTCTACATATACAGTTTTAATCATTGTTTCGGGGGGAGGAAT  2664

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2665  AAGAATGATTTTGAAATTTCACTAAGAAAGATATGCCCTCTTCCTAAAAATACATATATACAGATGTTTTGCTC  2738

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2739  ACAGCTCAGGTATTCATGGATCTCTGGAAGTTCATTTTTATAATCCCAAGGTAATCCAAAGAGCCTGCTAAAAA  2812

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct 2813  ATTCTGCTGTAAATGCATGGTACATGATCTCATTCCCTGTTTTACAACGAAGTATTGAATGGCTTAAACTCCTA  2886

Query    1  --------------------------ATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAATGGCGCGATCTC  48
                                      |||||||||..||||||.|||||||||||||||||.||||.|||||||
Sbjct 2887  CTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTCCCTCTGTTACCCAGGCTGGAGTGCAGTGGCTCGATCTC  2960

Query   49  CACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAG  122
            ..|||||||||||||||||.|.|..|||||||||||||||||||.||||||||.|||||||.||||||||||| 
Sbjct 2961  TGCTCACTGCAACCTCTGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTTCTGAGTAACTGGGATTACA-  3033

Query  123  GTGCCCA--CCACCACAGCTGGCTAA-----------TTTTTGTATTTTTAGTAGAGACTGGGTTTTACCATAT  183
             .||.||  |||.||...||||||||           |||||||||||||||||.|..|.||||||.|.|||.|
Sbjct 3034  -AGCACATGCCATCAGGCCTGGCTAATTTTTATTTTTTTTTTGTATTTTTAGTACAATCAGGGTTTCAGCATGT  3106

Query  184  TGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGTGCTGGGATTATAG  257
            |||.|||.|||||||||||||||||||||||  ||.|||||||||||||||||||||||.|||||||||||.||
Sbjct 3107  TGGTCAGGCTGGTCTCGAACTCCTGACCTCA--TGATCCGCCTGCCTTGGCTTCCCAAAATGCTGGGATTACAG  3178

Query  258  GAGTGAGCCACTGCGCCTGGCC-----------ATT--------------------------------------  282
            |.||||||||..||||||||||           |||                                      
Sbjct 3179  GCGTGAGCCAACGCGCCTGGCCAACTCCTACATATTTTAAAGCCACCCCATTAGTTTTCTATTTTTTTCCCCTT  3252

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3253  GGAGATCTTCCTTTAGGTCATTTTTACCATCTGATATCTCAAAACTAAGCCAAGGCTGAATGTGCTGAAATAGG  3326

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3327  ATTAGAGAGTACAGTAATAGGATAATTAGATTTGATTAGAAAATGACTGTGTGGGATTTTGTCAACAGTGAAGA  3400

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3401  AATGATCTAAGTATGTGGACTCCTAAGTGAATTGAGCATGATGACACTTTAGTGTAGTTAATGATCTAATGCTG  3474

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3475  GTCTGGTTGATGAGTCCCATTGAAAATGAGATGCTCTGTTTTCTGGTAAACTTTTCTGCAAAGAAAAATGTACT  3548

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3549  AAATGTTTCAGTTCAGAGTGTTCTATTTAAATGAAATTTCATTTAATTGCTTTTAGTTTTACTGCCCATAAGCC  3622

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3623  TTCAGTTGTTTCATTTAAAGTGTACTTTAAGCCCTCCACTATATTCACTGTTGAATCTAATGAGTATGAGAGGG  3696

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3697  TACCTTGGGCACAATCTCCACGAATGTATGAGCCATAACTACAGTATAGTATATAGAGATTAGCTTAAGTTATT  3770

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3771  TTGCTCTGCTAAAGATAGAGAAACAAGAGCAGTTTTCTAACATAATGTATGCTTCTGTAATAGGACTCAGTTAA  3844

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3845  AAAATAATTGGCAAATAGGAATGTCAATGAAATGTGGAAATCAATTGTTTTATACATGATTTTCCCCAATACGT  3918

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3919  TAATGTTTTGACTACCAAGTAAAAGCAGTTGCACTCTAAGTCCACTAACACAGCTGAAGGTAGTAAGCTGTGGA  3992

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 3993  GGAAAGTAGTCCTATATATAACACCCATTCACTCCTCCTTTTTCCTCTTGGCTTAATTTCACCATACGATCTGT  4066

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4067  CTTGAAAATGCTTATTGCACAATTCTTCCTGATCTTTGTGCATTTGTCCTTGTTTTTGTAACTCAACCTTTGGT  4140

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4141  TTATTTATTCCATCATTCTTTCCTAACTCAAACAAATTTGTGAAGTTCTAAATGTATTGAAATATATGTCGTAA  4214

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4215  CTTTTATTTTTAATTGTGCTAGCATTTTCTTAGCTTTGTAAATGTTTTTTGCAGTGCTATGGTTGTGATGTTAT  4288

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4289  GTAAGTTTTACACTTTTTTCTCCAACATAATTTTTTCCCGAAATATTGCCAGTTATTTTTGTTATTGAATAGAC  4362

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4363  TTAATTTTCTTAGAGCAGTTTCAGGATTACAGAAAAGTCAGAGAGTACAGAAAGTTCCCATATATCTCCCATCC  4436

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4437  CTTTTCTCACAGTTTCACTTGTTATTAACATCTTACATTAGTGTGGTACATTTGTTAACAATTGATAAAACAAT  4510

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4511  TTTGTTACATTATTATTAAGTACACAGTTTACACTAGAGTTTATTCTTTTTGTTGGTCAGTTCTATGAGTTTTG  4584

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4585  AATAGTGTATAATGTCATATATTCACCATTATATTGTCATGCAGAATAGTTTCACATTTCTGAATATCCCCTAT  4658

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4659  TTATCCCTTCCTCTTCCCCTCACAAACCCCTGGAATCCATTGATCTGAAACTGTCTTGCAGTTTTCTCTTTTCC  4732

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4733  AGAATGTATGTATAGAGTCATACAGACTCTGTTGCCCTTTCAAACTGGCTTCTTTCATTTAACAACACGCATGT  4806

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4807  AAGCATCCTTCATGACTTTTCATGGCTTGATAGCTCATTTATTTTTTATTGTTCAATAATATTTCATTGTATGG  4880

Query  283  --------------------------------------------------------------------------  282
                                                                                      
Sbjct 4881  ATATGCCACAGTTTATTTATCTATATATCTGTTGAAAGATATCTCGGTTACTTCCAATTTTTGGCAATTATGAA  4954

Query  283  ---------------  282
                           
Sbjct 4955  TAAAGATACTATAAA  4969

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