Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_13781
- Subject:
- XR_925324.3
- Aligned Length:
- 5846
- Identities:
- 244
- Gaps:
- 5566
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CGGCGGCGGGAAGATGGCGGCCTCCAGGAATGGGTTTGAAGCCGTGGAGGCAGAGGGCAGCGCAGGGTGCCGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAAGCTCGGGAATGGAGGTGGTGCTTCCTTTGGATCCTGCCGTCCCCGCCCCGCTGTGCCCTCACGGACCCACT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTTCTGTTTGTAAAGGTGACCCAAGGGAAAGAAGAAACTCGGAGGTTTTATGCCTGTTCAGCCTGTAGAGATAG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAAAGACTGTAATTTTTTTCAGTGGGAAGATGAAAAGTTGTCAGGAGCTAGACTTGCTGCCCGAGAAGCTCATA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 ACCGAAGATGTCAGCCTCCCCTGTCCCGAACGCAGTGTGTGGAAAGGTACTTGAAGTTTATTGAGTTGCCCTTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ACTCAGAGAAAGTTTTGTCAAACATGTCAGCAGTTGTTGTTACCAGATGACTGGGGGCAACATAGTGAGCATCA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GGTTCTGGGTAATGTGTCCATTACCCAGTTAAGAAGGCCCAGTCAACTCCTTTATCCACTGGAAAACAAGAAGA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CAAATGCCCAGTATCTGTTTGCTGATCGGAGCTGTCAGTTCTTGGTAGACTTACTTTCTGCCCTCGGATTCAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AGAGTACTGTGTGTTGGAACACCAAGGTTGCATGAGCTGATCAAGTTGACAGCATCAGGTGACAAGAAGTCTAA 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CATTAAAAGCCTTTTATTGGATATTGATTTTCGGTATTCACAGTTTTATATGGAAGATAGCTTTTGCCATTATA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATATGTTTAACCATCATTTCTTTGATGGAAAGACTGCCCTTGAAGTATGCAGAGCATTTTTACAGGAAGATAAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GGCGAAGGAATCATTATGGTGACGGATCCTCCGTTTGGTGGCTTGGTTGAACCTCTGGCTATTACATTCAAGAA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTTAATTGCTATGTGGAAAGAAGGTCAAAGCCAAGATGACAGTCACAAAGAACTACCCATTTTCTGGATTTTCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 CCTATTTTTTTGAATCCCGAATTTGTCAGTTTTTTCCAAGCTTCCAGATGCTGGATTACCAGGCTATTCCCTTC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 TTTTTGGACTACAGGTTGTTTTTACCTTTTAAGGTAGATTATGATAATCATGCACTTTATAAACACGGAAAGAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 AGGTCGAAAACAGTCTCCCGTGCGTATTTTCACCAACATTCCGCCCAACAAAATAATCCTTCCTACTGAAGAAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 GGTACAGATTTTGCTCTCCGTGTCAACGGTATGTTTCTCTAGAGAATCAACACTGTGAGCTCTGTAATTCTTGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACATCCAAGGATGGCAGGAAATGGAACCATTGCTTTCTCTGTAAAAAGTGTGTAAAGCCTTCCTGGATCCACTG 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TAGCATCTGCAATCACTGTGCTGTTCCAGATCATTCTTGTGAGGGCCCCAAACATGGCTGCTTTATTTGTGGTG 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AACTGGATCATAAACGCAGTACTTGTCCTAACATTGCTACATCTAAGAGAGCTAACAAGTCAGTCGAATACTTT 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 ACTAGAAAAATGTATTCCATCTGTGTTTTATACAGGATAATCCACAAAAGCATGCAACATTCAGAGGATCTTGA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGTGCCAAGTTAATTGTCACTTTCACTATTAAGTACTGGCTGCATAGATGGATGGAGGGAGGAGAGGAAGATGA 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 TTCAAAGAGCTTGCTTTCAAAGAGCTTACAGTTCTACAGCTTAGAGATGAAAATAACCAAAATATGAGAGCTGT 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CAGAAAGCAGAAGCAAAGAAAAAGTAATAAGATGAAAATGGAGACCACGAAAGGACAATCCATGAATCATACAT 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 CTGCTACAAGGAGAAAGAAAAGGAGGGAAAGAGCCCATCAATATCTTGGCTCTTAAATGTCCAGTGACTGGAGA 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 ATAAGAAAGATTTATGGTCCAACCTTTGATGCCATTTTCTGAAAGTGCCACACTGGACTTAAATTCAGCTGCTT 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CCAGAGGTGTGCACCTTTCTGAGCTAGATAACAGGCAGGTGGCATTTGCTGGTTTACAGTCCCTTATCTGCCTC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 TCTGGAGACATGGGGAGTTGTTCCATCTTCAGCCAGTTTACTAGTTCTTTCAGCATTCATTTTTCCTCACTTTA 2072
Query 1 --------------------------------------------------ATGGAGTCTTGCTCTGTCACCCAG 24
||||||||||||||||||.|||||
Sbjct 2073 AGTCTCTCCCAGTCACATTGTTCTATTTTTATGTTTTCATTTTTTTTGAGATGGAGTCTTGCTCTGTCTCCCAG 2146
Query 25 GCTGGAGTGCAATGGCGCGATCTCCACTCACTGCAACCTCTGCGTACCAGGTTCAAGCGATTCTCCTGTCTCAG 98
|||.||||||||||||.|.|.|||..|||||||||||||||||.|.||.|||||||||.|||||||||.||.||
Sbjct 2147 GCTAGAGTGCAATGGCACAACCTCAGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCAATTCTCCTGCCTTAG 2220
Query 99 CCTCCTGAGTAGCTGGGATTACAGGTGCCCA--CCACCACAGCTGGCTAATTTTTGTATTTTTAGTAGAGACTG 170
||||||||||||||||.||||.|| ||.|| |||||||..||||||||||||||||||||||||||||||.|
Sbjct 2221 CCTCCTGAGTAGCTGGAATTATAG--GCACATGCCACCACGACTGGCTAATTTTTGTATTTTTAGTAGAGACGG 2292
Query 171 GGTTTTACCATATTGGCCAGACTGGTCTCGAACTCCTGACCTCAGGTGGTCCGCCTGCCTTGGCTTCCCAAAGT 244
|||||.|||||.||||||||.|||||||||||||||||.|||||.|||.|..||||||||||||.|||||||||
Sbjct 2293 GGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGGCCTCAAGTGATTTGCCTGCCTTGGCCTCCCAAAGT 2366
Query 245 GCTGGGATTATAGGAGTGAGCCACTGCGCCTGGC--------CATT---------------------------- 282
||||||||||.|||..||||||||..|.||..|| ||||
Sbjct 2367 GCTGGGATTACAGGCATGAGCCACCTCACCCAGCTCCGGTCACATTATTCTAGCCTTTTTATCCAAAAAATGGG 2440
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2441 CAGACCATTCTTTTGCAGAAGATGTCAGAAGAAAATGAAAGTGAAAACCTATGCAGTTTGTTTACCGTGAACAT 2514
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2515 AAAAGTATGTTAATTTAAATAGGAAAATATTTTATGTTAAATATGAAACAATAGTTTAAACCCCACTTGAAAAG 2588
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2589 TATAGCGTACAATTATTTTTAGACTGAATTTGAAGATGATGGAAAGGGTTTTTACAAAGGCACTGTTTAGATAT 2662
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2663 ACAGATTATAATTATAATTACATTATTATTAAATATTTATTCTTCAAGTACTTTTTGCAGTTGTCCTCTGACGG 2736
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2737 TCTAGAATCACTTAAATGCTTGTTGAATGAGTGAGATGTTTAGAACTACGACTTGCTCTGTCATTCCAGTGTCG 2810
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2811 TTTAACCTATGCAGTAAGATTCTGTCTTTGTAAAAGTAGTTCGTAGCAGAAGCCAGGATAGTTTGGTAATTAAA 2884
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2885 CGCCCAAACTAAACTCCTCATTCCTACCCTTAATATTTCCTGGCTGTATGATCTTGGCCAGGTCACTCTCTAAA 2958
Query 283 -------------------------------------------------------------------------- 282
Sbjct 2959 AGCCCCGGTTTCTTCATTATTATCATTATTATAATGGGGAGAATAACAGCTATACCTGAGGTTTGTTTTGTGAT 3032
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3033 TAAATTAAATGAGACCCAAGTGCTTGGCTCTCAGTTCTCCTCTGTCATTGGTGTGTTAGGTTAACAATGAAGAT 3106
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3107 TGTTACTGGGTCTAATGGTAATTACCTTTTGGCCTGATAACAAAGCATTGAAGGCAGTAATTTGAACTCCCAGA 3180
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3181 ACAAACAGTTCATCTCCCCGTTTCTGTGCTAGTTATTGTCTCCTTAAGACTGAATTGTTTTGAATGACTTATAT 3254
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3255 TTGCATAATGACTTTTCTCTTGTTTCCAAACAACTGCTGTAGAGCAGATTTGAAGGCATCTTTGTTTGGGGTTA 3328
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3329 GGCAGAGCCCTGTAAGTAAGGGTGGAGGAACTGCACTCTATCTGGTATTTAAATTCCAGGTAAGTTAGGACTGA 3402
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3403 TGCCTGGTGTAGAATGCTCAAGTGTGGCCCAGATCAGTGTGGCAGTGGTGTACATCAGTTGATGTCAAAAGATG 3476
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3477 AGTTATACCCCTGGACTTCATAAGCATCAGAAAGCTCTTCTCCCTTTTGTTACATGGAGGGCTATGATAGGAGG 3550
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3551 GGCACATTTGGAGGTGACTGGGTGAGATATGAAGTTTGTAAAACCGTTGTGAGAGTTCCCCTCTCTGATTCAAG 3624
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3625 CAAGGATAGGGACATTGCCTGACTTTATGGTGTTCACCATTCCATGATAAAATCTATTGAAATCTCCTCTGAAA 3698
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3699 CTAAGACACCTGAGGGACTATGACTACTGAAAAATTGAGTTCTGAAGGCCAACAGTTATTCTCATCACTATATT 3772
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3773 GCCTTAATGTTAAGATACCATCAATTATAAAATACATCATTGATTTTATCATAGCTTTTCAGGGGGAGAAGAGA 3846
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3847 AATAATACTTCATTAATTAATTTTTAGATCATCTGATTTCAGAAATACTGAAATGCAAAAAAAAAAAAAATCTT 3920
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3921 AGAATTGAGGAAATAGTTATAATCAGGAATAATGTACTTATTTATTTTGAGACAGAGTCTTGCTTTGTTGGACA 3994
Query 283 -------------------------------------------------------------------------- 282
Sbjct 3995 GGCTGGAATGCAGTGGTGGGATCTCTGCTCACCGCAACCTCTGCCTCCTGGGTTCAAGTGATTCTTGTGCCTCA 4068
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4069 GCCTCCCTGGTAGCTGGGATTATGGGTGTGTGCCACCACACCCGGCTAATTTTTATATTTTTGTAGAGACTGGG 4142
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4143 TTTCGCCATGTTGGCCAGGCGAGTCTCAAACTCCTCATCTCAGGTGATCTGCCCGCCTCAGCTTCCCAAAGTGC 4216
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4217 TGGGATTACAGACGTGAGCCACCACACCCAGCCAGGAATAATGTACTTTAAAACTTTATTACTGTCTTAGAAAG 4290
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4291 TTAAAAATAGGAAATTTGGTGATTTTACACTTATATTCAATTAATACTAATTTTAAGGACTTAATCTCTATTCC 4364
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4365 TTTTTCAGAGAATAAACTAATTGGTAGCCTGTAAAAATGTGTCTCTGGGAGGTAGAATGTGAAGCGGGATGAGG 4438
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4439 TCATTTGTTCTTAATAGAAATCTGAACATCTTAACATTAAGATACCTTCTCAAAATAGCAATAGAAGAAAATCC 4512
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4513 CTAAAATTTGACAGATAACATTTTCTAAGCTTTTTAAAAGGACATTTTTAATAAATACAGCTAAATTTCATTCT 4586
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4587 TCTTATATTATGAAATTTAATGAGAAACAAAGTCTTTTTGTAGGCTGGATTTCATGTTTTTTCCTAATTAGTCC 4660
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4661 AGTACCTAGACTAGTTTATCACTCCATATGCCCCATTCTTTTCATCCGATACTGTTCTTTCTGCTTGGAATATG 4734
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4735 TCCCTCCATGTGGCCACTCCGTTCTCTTTTGGGAATCTTCCACGAGTCCCTGATACTGAAACCTTCTTTGGCCC 4808
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4809 CTTGGTGTTTGATACCACATTTAAGGCCTTTCACATATTATTCTGTGATTATTTTTACTGATTTTATTTCCCTC 4882
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4883 AAAGATTTAGGTCTCTTAATGTCAGCACCCATTTCATCTGCTCTTGTGTATCTTGTGCCTTTTTGGTGCTCAAT 4956
Query 283 -------------------------------------------------------------------------- 282
Sbjct 4957 AAAAATTTGATGTAAGCATGGAATTTTCTAGAGGCTTTGAAGTGGTAGGCATGCCTGAAATACGGACTGGACCC 5030
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5031 ACTCTATTATGTTTCTTCTAGGGACTGAAAAGGGAAACAGATTTGTATTAGGAGGCACTTAGAGTCAATATGAG 5104
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5105 GACCACCCTAACTGAAGTTTTAAATGTGGGGATGTGCTGCGTGAAGATTAGTAGCCTTGTAGCAGGATGAGCCG 5178
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5179 TGGACAAAACCCCACAGACACCAAGATAGTGAAGGAAGTAGCTTTTAATCAGTTGGAAGCATCGACAGTCTAGT 5252
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5253 GTCTTAAAATCCGAGTTTGTTGAGTGCACAATTTCTGTCCCTTTTAAGGGCTCACAACACTAAAGATTTTACAT 5326
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5327 GACAGGGCCGTGATCGATTGAGCAATCTAGGGGGTATGTGACAGGGGCTGCATGCACCGGTAATCAGAGTGAAA 5400
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5401 CAACAGAACGAGAAGTTTCACAATGTCCTTCCATACAATGTCTGGAATCTACGGATAACATCGGTTGCTAGGTC 5474
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5475 ATGGGTTGAATTTTAACTATCAGGCTAAGGTCAGGCAGGCCCAGGCCTGGTTTTGGGTCTGGTGCCTGGCACCC 5548
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5549 GGCTGCCTGCCTTTGGTTTTGCTTCCTTGTTTCTTAAAACAGGTACTGAGCATAAAACAATATAGAACAATACG 5622
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5623 GGGGGGGATCTCTTTCTCTCTTCTCTCAGCTTTATCTGCAAGACCCCTTCAAAGTAATCTGCAAAATACTAGGC 5696
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5697 ATCTGGGAGAAGTTTGACTAATCTTGAAATATAAAATCACAACCTACAAAGGGTCCTGGTCAGCTGCCACTGCC 5770
Query 283 -------------------------------------------------------------------------- 282
Sbjct 5771 TTCACAATGTCCCTGTTGGTCTCTCCACTGGAGTAGTACATCTGTTGCCAGAGAAATAAAAATGTCAGTTTGTG 5844
