Nucleotide Global Alignment

Description

Query:
ccsbBroad304_13931
Subject:
NM_001310596.1
Aligned Length:
765
Identities:
475
Gaps:
242

Alignment

Query   1  ATGAGCTCAATCGGCACTGGGTATGACCTGTCAGCCTCTACATTCTCTCCTGACGGAAGAGTTTTTCAAGTTGA  74
                                                                                     
Sbjct   1  --------------------------------------------------------------------------  0

Query  75  ATATGCTATGAAGGCTGTGGAAAATAGTAGTACAGCTATTGGAATCAGATGCAAAGATGGTGTTGTCTTTGGGG  148
                                                                                     
Sbjct   1  --------------------------------------------------------------------------  0

Query 149  TAGAAAAATTAGTCCTTTCTAAACTTTATGAAGAAGGTTCCAACAAAAGACTTTTTAATGTTGATCGGCATGTT  222
                                                                                     
Sbjct   1  --------------------------------------------------------------------------  0

Query 223  GGAATGGCAGTAGCAGGTTTGTTGGCAGATGCTCGTTCTTTAGCAGACATAGCAAGAGAAGAAGCTTCCAACTT  296
              ||||||||.|||||||||.||||||||||||||||.||||||||||||||.|||||||||||.||||||||
Sbjct   1  ---ATGGCAGTTGCAGGTTTGCTGGCAGATGCTCGTTCATTAGCAGACATAGCGAGAGAAGAAGCATCCAACTT  71

Query 297  CAGATCTAACTTTGGCTACAACATTCCACTAAAACATCTTGCAGACAGAGTGGCCATGTATGTGCATGCATATA  370
           .||.||.|||||.|||||.||||||||.|||||||||||||||||||||||||||||||||||.||.||.||||
Sbjct  72  TAGGTCCAACTTCGGCTATAACATTCCTCTAAAACATCTTGCAGACAGAGTGGCCATGTATGTACACGCCTATA  145

Query 371  CACTCTACAGTGCTGTTAGACCTTTTGGCTG-----------------NNNNCAGTGTGAATGACGGTGCGCAA  427
           ||||||||||.||||||||||||||||||||                 ....|||||.||||||.|||||.||.
Sbjct 146  CACTCTACAGCGCTGTTAGACCTTTTGGCTGCAGTTTCATGTTGGGGTCTTACAGTGCGAATGATGGTGCACAG  219

Query 428  CTCTACATGATTGACCCATCAGGTGTTTCATACGGTTATTGGGGCTGTGCCATCGGCAAAGCCAGGCAAGCTGC  501
           |||||.|||||.||||||||||||||||||||.|||||.|||||||||||.||.||||||||||||||.|||||
Sbjct 220  CTCTATATGATCGACCCATCAGGTGTTTCATATGGTTACTGGGGCTGTGCGATTGGCAAAGCCAGGCAGGCTGC  293

Query 502  AAAGACGGAAATAGAGAAGCTTCAGATGAAAGAAATGACCTGCCGTGATATCGTTAAAGAAGTTGCAAAAATAA  575
           ||||||.||.|||||.||||||||||||||.||||||||.|||||||||.|.||||||||||||||||||||||
Sbjct 294  AAAGACAGAGATAGAAAAGCTTCAGATGAAGGAAATGACTTGCCGTGATGTAGTTAAAGAAGTTGCAAAAATAA  367

Query 576  TTTACATAGTACATGACGAAGTTAAGGATAAAGCTTTTGAACTAGAACTCAGCTGGGTTGGTGAATTAACTAAT  649
           |||||||||||||.||.||||||||||||||||||||||||||.||.||||||||||||||||||||||||||.
Sbjct 368  TTTACATAGTACACGATGAAGTTAAGGATAAAGCTTTTGAACTGGAGCTCAGCTGGGTTGGTGAATTAACTAAA  441

Query 650  GGAAGACATGAAATTGTTCCAAAAGATATAAGAGAAGAAGCAGAGAAATATGCTAAGGAATCTCTGAAGGAAGA  723
           ||||||||||||||||||||.|||||.||||||||.|||||||||||||||||.|||||||||.||||||||||
Sbjct 442  GGAAGACATGAAATTGTTCCCAAAGACATAAGAGAGGAAGCAGAGAAATATGCCAAGGAATCTTTGAAGGAAGA  515

Query 724  AGATGAATCAGATGATGATAATATG  748
           ||||||||||||||||||.||||||
Sbjct 516  AGATGAATCAGATGATGACAATATG  540