Construct: ORF ccsbBroad304_13931

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014118.1_s304c1, BRDN0000404122
Derived from:
ccsbBroadEn_13931
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
PSMA3 (5684)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13931
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5684 PSMA3 proteasome 20S subunit alpha 3 NM_152132.2 99.4% 53.3% 401_402insNNNN
2 human 5684 PSMA3 proteasome 20S subunit alpha 3 NM_002788.4 97.2% 51.9% 402_422delinsNNNN
3 human 5684 PSMA3 proteasome 20S subunit alpha 3 NR_038123.1 72.7% (many diffs)
4 mouse 19167 Psma3 proteasome (prosome, macrop... NM_011184.5 89.4% 51.9% (many diffs)
5 mouse 19167 Psma3 proteasome (prosome, macrop... XM_017314996.1 89.4% 51.9% (many diffs)
6 mouse 19167 Psma3 proteasome (prosome, macrop... NM_001310595.1 62% 22.8% (many diffs)
7 mouse 19167 Psma3 proteasome (prosome, macrop... NM_001310596.1 62% 22.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
480
ORF length:
414
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag ctcaatcggc actgggtatg acctgtcagc ctctacattc tctcctgacg
121gaagagtttt tcaagttgaa tatgctatga aggctgtgga aaatagtagt acagctattg
181gaatcagatg caaagatggt gttgtctttg gggtagaaaa attagtcctt tctaaacttt
241atgaagaagg ttccaacaaa agacttttta atgttgatcg gcatgttgga atggcagtag
301caggtttgtt ggcagatgct cgttctttag cagacatagc aagagaagaa gcttccaact
361tcagatctaa ctttggctac aacattccac taaaacatct tgcagacaga gtggccatgt
421atgtgcatgc atatacactc tacagtgctg ttagaccttt tggctgnnnn cagtgtgaat
481gacggtgcgc aactctacat gattgaccca tcaggtgttt catacggtta ttggggctgt
541gccatcggca aagccaggca agctgcaaag acggaaatag agaagcttca gatgaaagaa
601atgacctgcc gtgatatcgt taaagaagtt gcaaaaataa tttacatagt acatgacgaa
661gttaaggata aagcttttga actagaactc agctgggttg gtgaattaac taatggaaga
721catgaaattg ttccaaaaga tataagagaa gaagcagaga aatatgctaa ggaatctctg
781aaggaagaag atgaatcaga tgatgataat atgtacccaa ctttcttgta caaagtggtt
841ggtaagccta tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct
901aaccggtggc gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)