Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14033
- Subject:
- NM_001134384.1
- Aligned Length:
- 3301
- Identities:
- 2159
- Gaps:
- 863
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGGCTTGCCGAAGACGCTATTTTGTTGAGGGCGAGGCCCCCAGCAGCGAGACTGGCACATCGCTGGACAGCCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCAGCCTACCATCAGGGTCCCCTGGTACCTGGTTCCAGCCTGAGTCCAGACCACTACGAGCACACATCAGTGG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCGCCTATGGGCTGTACGCAGGGCCAGGACCACAACAGCGCACACGGAGGCCCCGGCTGCAGCACTCGACCTCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GTCCTGCGCAAGCAGGCTGAGGAGGAGGCCATCAAGCGCTCTCGGTCACTCTCTGAGAGCTATGAGCTCTCTTC 296
Query 1 -------------------------ATGCTAGAACGAAAGTATGGGGGGCGCCTGGTAACCCGCCATGCGGCCC 49
|||||||||||.|||||||||||.|||||.||.|||||||||||.||||
Sbjct 297 AGATCTGCAAGACAAGCAGGTGGAAATGCTAGAACGCAAGTATGGGGGACGCCTCGTGACCCGCCATGCAGCCC 370
Query 50 GCACCATCCAGACGGCGTTTCGCCAGTACCAGATGAACAAGAACTTCGAGCGCTTGCGCAGCTCCATGTCAGAG 123
|||||||||||||||||||.|||||.||||||||||||||||||||.||||||.||||||||||||||||.|||
Sbjct 371 GCACCATCCAGACGGCGTTCCGCCAATACCAGATGAACAAGAACTTTGAGCGCCTGCGCAGCTCCATGTCGGAG 444
Query 124 AACCGCATGTCACGCCGGATTGTGCTGTCCAACATGAGGATGCAGTTCTCCTTTGAGGGGCCTGAGAAAGTGCA 197
||||||||||||||.||.|||||||||||||||||||||||||||||||||||||||||.||.|||||.|||||
Sbjct 445 AACCGCATGTCACGTCGCATTGTGCTGTCCAACATGAGGATGCAGTTCTCCTTTGAGGGCCCCGAGAAGGTGCA 518
Query 198 CAGCTCCTACTTCGAGGGGAAGCAGGTCTCAGTGACTAACGACGGCTCCCAGCTGGGAGCCCTGGTGTCCCCTG 271
||||||||||||.|||||.|||||||||||.||||||||.||.||||||||||||||.|||||||||.|..|.|
Sbjct 519 CAGCTCCTACTTTGAGGGAAAGCAGGTCTCTGTGACTAATGATGGCTCCCAGCTGGGGGCCCTGGTGCCATCAG 592
Query 272 AGTGTGGTGACCTCAGCGAGCCCACCACCCTCAAGTCTCCGGCCCCCTCCAGTGACTTTGCGGACGCCATCACC 345
|.|||||.|||||.||.|| |||| .|||||||||||||.||||||||||||||||||||.||.||||||||.
Sbjct 593 AATGTGGAGACCTTAGTGA-CCCA--GCCCTCAAGTCTCCAGCCCCCTCCAGTGACTTTGCAGATGCCATCACG 663
Query 346 GAGCTGGAGGACGCCTTCTCTAGGCAAGTGAAATCACTGGCCGAGTCCATCGACGATGCCCTCAACTGCCGCAG 419
||.||||||||.||||||||.|||||.||||||||.|||||.||.||||||||.|||||||||||.||||||||
Sbjct 664 GAACTGGAGGATGCCTTCTCCAGGCAGGTGAAATCCCTGGCTGAATCCATCGATGATGCCCTCAATTGCCGCAG 737
Query 420 CCTGCACACTGAGGAGGCACCGGCCCTGGATGCGGCGCGGGCCCGGGACACCGAACCCCAGACAGCCCTGCACG 493
|||.||||.||||||||.|||.|||...||..||||.|||||.||||||||.||.|||.|..|||..||.||.|
Sbjct 738 CCTACACAGTGAGGAGGTACCAGCCTCAGACACGGCCCGGGCTCGGGACACTGAGCCCAAACCAGGTCTACATG 811
Query 494 GCATGGACCACCGCAAACTGGACGAGATGACGGCCTCGTACAGTGATGTCACCCTGTACATCGATGAGGAGGAG 567
||||||||||||||||||||||.||||||||.||||||||.||||||||.|||||.|||||.||||||||.|||
Sbjct 812 GCATGGACCACCGCAAACTGGATGAGATGACAGCCTCGTATAGTGATGTGACCCTCTACATTGATGAGGAAGAG 885
Query 568 CTGTCGCCCCCTCTGCCCCTCTCGCAGGCAGGGGACCGGCCGTCCAGCACCGAGTCGGACCTGCGGCTACGGGC 641
|||||.||.||.||.||.|||||.|||||.||.||.|||||.||||||||.|||||||||||||||||..||.|
Sbjct 886 CTGTCACCACCGCTTCCACTCTCACAGGCTGGCGATCGGCCCTCCAGCACAGAGTCGGACCTGCGGCTGAGGTC 959
Query 642 TGGGGGCGCAGCCCCAGACTACTGGGCCCTGGCCCACAAAGAGGACAAGGCTGACACGGACACGAGCTGCCGGA 715
||||||.|||||||..||||||||||||.||||||||||||||||||||||||||||||||||.||||||||.|
Sbjct 960 TGGGGGTGCAGCCCAGGACTACTGGGCCTTGGCCCACAAAGAGGACAAGGCTGACACGGACACAAGCTGCCGAA 1033
Query 716 GCACGCCGTCGCTGGAGCGGCAGGNGCAGCGGCTGCGGGTGGAGCATCTGCCGCTGCTCACCATCGAGCCACCC 789
||||.||.||.||||||||||..|.||..|||||||||||||||||.|||||.|||||.|||||.|||||||||
Sbjct 1034 GCACACCATCACTGGAGCGGCCAGAGCCACGGCTGCGGGTGGAGCACCTGCCCCTGCTTACCATTGAGCCACCC 1107
Query 790 AGCGACAGCTCTGTGGACCTTAGTGACCGCTCGGAGCGGGGGTCACTCAAGAGGCAGAGTGCTTACGAGCGCAG 863
||.||.|||||.|||||.||.|||||||||||.||.||..|.||||||||||||||||||||.||.||||||||
Sbjct 1108 AGTGATAGCTCCGTGGAACTCAGTGACCGCTCAGATCGCAGCTCACTCAAGAGGCAGAGTGCCTATGAGCGCAG 1181
Query 864 CCTTGGCGGGCAGCAGGGCAGTCCCAAGCATGGTCCCCACAGCGGCGCCCCCAAGAGCCTCCCCCGGGAGGAGC 937
|||.||.||||||||||||||.|||||||||||.||||||.|.|||.|||||||..||||||||.|||||||.|
Sbjct 1182 CCTCGGTGGGCAGCAGGGCAGCCCCAAGCATGGCCCCCACGGTGGCCCCCCCAAAGGCCTCCCCAGGGAGGAAC 1255
Query 938 CTGAGTTGCGGCCCCGGCCCCCCAGGCCCCTGGACAGCCACTTGGCCATCAATGGCTCAGCCAACCGGCAGAGC 1011
||||.||||||||.|||||||||||.||.||.||.||.|||.|.|||||||||||.||||||||||||||||||
Sbjct 1256 CTGAATTGCGGCCTCGGCCCCCCAGACCTCTTGAGAGTCACCTAGCCATCAATGGTTCAGCCAACCGGCAGAGC 1329
Query 1012 AAGTCTGAGTCGGACTACTCAGACGGTGACAATGACAGCATCAACAGCACGTCCAACTCCAACGATACCATCAA 1085
||.||||||||.|||||||||||.||.|||||||||||||||||||||||.|||||||||||.||.|||||.||
Sbjct 1330 AAATCTGAGTCTGACTACTCAGATGGGGACAATGACAGCATCAACAGCACCTCCAACTCCAATGACACCATAAA 1403
Query 1086 CTGCAGCTCCGAGTCATCGTCCCGTGACAGCCTGCGGGAGCAGACGCTCAGCAAGCAGACCTACCACAAGGAGG 1159
|||||||||.|||||.||.||.||.||||||||||||||.|||||.||||||||||||||.||||||||||||.
Sbjct 1404 CTGCAGCTCTGAGTCCTCATCACGGGACAGCCTGCGGGAACAGACACTCAGCAAGCAGACATACCACAAGGAGA 1477
Query 1160 CCCGCAACAGCTGGGACTCGCCTGCCTTTAGCAACGATGTCATCCGCAAGAGGCACTACCGCATCGGCCTGAAC 1233
|||||||||||||||||||.||.||.||.|||||||||||||||||.||||||||.|||||.||.|||||.||.
Sbjct 1478 CCCGCAACAGCTGGGACTCTCCAGCTTTCAGCAACGATGTCATCCGTAAGAGGCATTACCGAATTGGCCTAAAT 1551
Query 1234 CTCTTCAACAAGAAGCCTGAGAAGGGAGTCCAGTACCTCATCGAGCGTGGCTTTGTGCCCGACACGCCCGTCGG 1307
||||||||||||||||||||||||||..|||||||.|||||.|||||.|||||.||||||||||||||.||.||
Sbjct 1552 CTCTTCAACAAGAAGCCTGAGAAGGGCATCCAGTATCTCATTGAGCGCGGCTTCGTGCCCGACACGCCAGTGGG 1625
Query 1308 GGTGGCCCACTTCCTGCTGCAGCGCAAGGGCCTCAGCCGGCAGATGATCGGCGAGTTCCTGGGCAACCGGCAGA 1381
.||||||||||||||||||||||||||||||||||||||.|||||||||||.|||||||||||.||||||||||
Sbjct 1626 AGTGGCCCACTTCCTGCTGCAGCGCAAGGGCCTCAGCCGCCAGATGATCGGTGAGTTCCTGGGAAACCGGCAGA 1699
Query 1382 AGCAGTTCAACCGTGACGTGCTCGACTGCGTCGTGGACGAGATGGACTTCTCTACCATGGAGCTGGATGAGGCC 1455
||||||||||||||||.|||||||||||.||.|||||||||||||||||||||.||||||||||.|||||.|||
Sbjct 1700 AGCAGTTCAACCGTGATGTGCTCGACTGTGTTGTGGACGAGATGGACTTCTCTGCCATGGAGCTAGATGAAGCC 1773
Query 1456 CTCAGGAAATTCCAGGCGCACATCCGTGTCCAAGGGGAGGCTCAGAAAGTGGAGCGGCTCATAGAGGCGTTCAG 1529
|||.||||.||||||||.||||||||.|||||||||||||||||||||||||||||||||||.|||||.|||||
Sbjct 1774 CTCCGGAAGTTCCAGGCACACATCCGAGTCCAAGGGGAGGCTCAGAAAGTGGAGCGGCTCATCGAGGCATTCAG 1847
Query 1530 CCAGCGCTACTGCATCTGCAACCCTGGGGTGGTGCGGCAATTCCGGAACCCAGACACCATTTTCATCCTGGCCT 1603
||||||.|||||..||||||||||.|||||||||||.||.||||||||||||||||||||.|||||||||||||
Sbjct 1848 CCAGCGGTACTGTGTCTGCAACCCAGGGGTGGTGCGACAGTTCCGGAACCCAGACACCATCTTCATCCTGGCCT 1921
Query 1604 TCGCCATCATCCTGCTGAACACCGACATGTACAGCCCCAATGTCAAGCCCGAGCGGAAAATGAAGCTAGAGGAC 1677
||||||||||||||||.|||||.||||||||||||||||||||||||||.|||||.|||||||||||.||||||
Sbjct 1922 TCGCCATCATCCTGCTCAACACAGACATGTACAGCCCCAATGTCAAGCCAGAGCGCAAAATGAAGCTGGAGGAC 1995
Query 1678 TTCATCAAGAACCTCCGAGGTGTGGACGATGGTGAGGACATTCCCCGTGAGATGCTGATGGGGATCTATGAACG 1751
||..||||||||||||||||||||||.||.|||||.|||||||||||.||||.|||.||.|||||||||||.||
Sbjct 1996 TTTGTCAAGAACCTCCGAGGTGTGGATGACGGTGAAGACATTCCCCGGGAGACGCTAATTGGGATCTATGAGCG 2069
Query 1752 GATCCGTAAGCGAGAGCTAAAGACCAATGAGGACCATGTGTCCCAGGTGCAGAAGGTGGAGAAGCTCATTGTGG 1825
.||||||||||||||.||.||||||||.||||||||.||||||||||||||||||||.|||||||||||.||||
Sbjct 2070 AATCCGTAAGCGAGAACTGAAGACCAACGAGGACCACGTGTCCCAGGTGCAGAAGGTTGAGAAGCTCATCGTGG 2143
Query 1826 GGAAAAAGCCGATCGGATCCCTGCATCCCGGGCTCGGCTGTGTGCTCTCTCTGCCCCACCGTCGGTTGGTCTGC 1899
|.||.||||||||.|||||||||||||..||.||.|||||||||||.|||||.|||||.||.||..|.||||||
Sbjct 2144 GCAAGAAGCCGATTGGATCCCTGCATCATGGTCTTGGCTGTGTGCTGTCTCTTCCCCATCGACGACTAGTCTGC 2217
Query 1900 TACTGCCGGCTCTTTGAGGTTCCAGACCCAAACAAGCCCCAGAAACTCGGACTACACCAGCGAGAAATCTTCCT 1973
|||||||||||.|||||.|||||.|||||.|||||.||||||||.||.|||||||||||||||||.||||||||
Sbjct 2218 TACTGCCGGCTTTTTGAAGTTCCTGACCCCAACAAACCCCAGAAGCTGGGACTACACCAGCGAGAGATCTTCCT 2291
Query 1974 GTTCAACGACCTCCTGGTGGTCACCAAGATCTTCCAGAAGAAGAAGAACTCGGTGACGTACAGCTTCCGACAGT 2047
|||.||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||||
Sbjct 2292 GTTTAATGACCTCCTGGTGGTCACCAAGATCTTCCAGAAGAAGAAGAACTCGGTGACATACAGCTTCCGGCAGT 2365
Query 2048 CCTTCTCCTTGTACGGCATGCAGGTCCTGCTCTTCGAGAACCAGTACTACCCCAATGGCATCCGGCTCACCTCG 2121
||||||||.|.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||.||.||.
Sbjct 2366 CCTTCTCCCTCTACGGCATGCAGGTCCTGCTCTTCGAGAACCAGTACTATCCCAATGGCATCCGGCTGACGTCT 2439
Query 2122 TCTGTCCCCGGAGCAGATATCAAAGTGTTAATAAACTTCAACGCCCCCAACCCTCAAGACCGGAAGAAATTCAC 2195
.|||||||.||||||||.|||||||||.||||||||||||||||.|||||.|||||.|||||||||||.|||||
Sbjct 2440 GCTGTCCCTGGAGCAGACATCAAAGTGCTAATAAACTTCAACGCTCCCAATCCTCAGGACCGGAAGAAGTTCAC 2513
Query 2196 CGATGACCTGCGGGAGTCCATTGCGGAAGTCCAAGAGATGGAGAAGCACAGGATAGAGTCGGAGCTCGAGAAGC 2269
.||.||||||||||||||..|.||.|||||.||||||||||||||.|||.|.||||||||||||||||||||||
Sbjct 2514 TGACGACCTGCGGGAGTCTGTCGCTGAAGTGCAAGAGATGGAGAAACACCGAATAGAGTCGGAGCTCGAGAAGC 2587
Query 2270 AGAAAGGCGTCGTGCGGCCCAGCATGTCCCAGTGCTCTAGCCTCAAAAAGGAGTCGGGCAACGGAACACTGAGC 2343
|||||||.||||||||||||||||||||.||||||||.|||||||||||||||||.||||||||.|||||||||
Sbjct 2588 AGAAAGGTGTCGTGCGGCCCAGCATGTCACAGTGCTCCAGCCTCAAAAAGGAGTCAGGCAACGGGACACTGAGC 2661
Query 2344 CGGGCCTGCCTGGACGACAGCTATGCCAGCGGTGAGGGCCTCAAGCGCAGCGCCCTCAGCAGCTCCCTGCGGGA 2417
.||||.||||||||.||||||||||||||.||.||||||||||||||||||||||||||||||||.|||.|.||
Sbjct 2662 AGGGCTTGCCTGGATGACAGCTATGCCAGTGGCGAGGGCCTCAAGCGCAGCGCCCTCAGCAGCTCACTGAGAGA 2735
Query 2418 CCTCTCGGAAGCCGGGG---------------------------------------------------TCCATC 2440
||||||.|||| ||||| ||||||
Sbjct 2736 CCTCTCAGAAG-CGGGGAAGCGAGGGCGTCGCAGCAGTGCGGGATCGCTAGAGAGCAATGTGGAAGGCTCCATC 2808
Query 2441 AT------------------------------------------------------------------------ 2442
||
Sbjct 2809 ATTAGCAGTCCTCACATGCGCCGGAGAGCGACCTCAACACGAGAGTGCCCATCTCGCCCCCCCCAGCCCGTGCC 2882
Query 2443 -------------------------------------------------------------------------- 2442
Sbjct 2883 TAACTCCTCCTCTCTCCTGGGTTCTTTGTTTGGGAGCAGGAGAGGGAAGCCCCCTCCCCAGGCCCACCCACCCT 2956
Query 2443 -------------------------------------------------------------------------- 2442
Sbjct 2957 CAGCCCCTCCCCCAGCACCCCCTCACGCCCATCACCCTGGGCCCTCAGAAGGCCCACTGCATGGACATCATGCA 3030
Query 2443 -------------------------------------------------------------------------- 2442
Sbjct 3031 CAGTACTGCCATGCACAGCAGAATCCTCCGCCCTATCACCACCACCACCACTACCACCCACCCCCCCACCTGCA 3104
Query 2443 -------------------------------------------------------------------------- 2442
Sbjct 3105 GCACACCCACCAGTACCACCATGGCCCACACGGCGGGCACCCCCCGTATGGGGCCCATGCACACAGCCACCCGC 3178
Query 2443 -------------------------------------------------------------------------- 2442
Sbjct 3179 CTCTGCCCACAGCTCACCCTGGTCATGCAGGGCACTCAGCGCATCATCATGGGCAGCCCCCTGCCCCACCGCCC 3252
Query 2443 --------------------------------------------- 2442
Sbjct 3253 CCCACCAGCAGCAAGGCCAAGCCCAGCGGCATCAGCACAGTTGTG 3297