Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14041
- Subject:
- XR_001736906.2
- Aligned Length:
- 3156
- Identities:
- 1421
- Gaps:
- 1732
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGGAGAGTCTGCAAGGGGAAGAGTGTGTCTGTGACACTGCCAGCAGCGCGCAGAGGGAGGGATGGGGGCGGGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATCGGCGTAGGGGCCCTCGGAAAGAACGGATATTGCTGTGACACCGCGGGGACGCTCTGAAGGGACGAGTGTCG 148
Query 1 ----------------------------------------------ATGGGGATGTGGGCGTCGCTGGACGCTT 28
||||||||||||||.|||||||||||||
Sbjct 149 GTGTGGCACCGGTGCACGCTGAAGGAGCCGGCGGAACCGGGTGGCCATGGGGATGTGGGCATCGCTGGACGCTT 222
Query 29 TGTGGGAGATGCCGGCCGAGAAGCGTATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCTTTGGGAG 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 TGTGGGAGATGCCGGCCGAGAAGCGTATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCTTTGGGAG 296
Query 103 ACCTTCCTAGCACAGCGGCAGAGAAGGATATATAAAACAACAACTCATGTACCACCGGAGTTAGGACAGATCAT 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ACCTTCCTAGCACAGCGGCAGAGAAGGATATATAAAACAACAACTCATGTACCACCGGAGTTAGGACAGATCAT 370
Query 177 GGATTCTGAAACATTTGAGAAATCTCGACTCTATCAACTGGATAAAAGCACTTTCAGCTTCTGGTCAGGACTCT 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGATTCTGAAACATTTGAGAAATCTCGACTCTATCAACTGGATAAAAGCACTTTCAGCTTCTGGTCAGGACTCT 444
Query 251 ATTCAGAGACTGAAGGCACTCTTATTCTTCTCTTTGGAGGAATACCTTATCTCTGGAGACTTTCTGGACGGTTC 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 ATTCAGAGACTGAAGGCACTCTTATTCTTCTCTTTGGAGGAATACCTTATCTCTGGAGACTTTCTGGACGGTTC 518
Query 325 TGTGGTTATGCTGGCTTTGGACCAGAATATGAGATCACTCAGTCCCTGGTGTTTCTGCTGTTGGCTACACTTTT 398
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 TGTGGTTATGCTGGCTTTGGACCAGAATATGAGATCACTCAGTCCCTGGTGTTTCTGCTGTTGGCTACACTTTT 592
Query 399 CAGTGCATTGGCTGGTTTGCCATGGAGTCTTTATAATACTTTTGTGATAGAAGAAAAACATGGCTTCAATCAAC 472
||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CAGTGCATTGACTGGTTTGCCATGGAGTCTTTATAATACTTTTGTGATAGAAGAAAAACATGGCTTCAATCAAC 666
Query 473 AGACTTTGGGGTTCTTCATGAAAGATGCAATCAAGAAATTTGTTGTGACTCAGTGCATTTTGTTGCCTGTGTCT 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 667 AGACTTTGGGGTTCTTCATGAAAGATGCAATCAAGAAATTTGTTGTGACTCAGTGTATTTTGTTGCCTGTGTCT 740
Query 547 TCACTTCTACTTTACATTATTAAAATTGGGGGTGACTATTTTTTTATTTATGCCTGGCTGTTCACATTAGTTGT 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TCACTTCTACTTTACATTATTAAAATTGGGGGTGACTATTTTTTTATTTATGCCTGGCTGTTCACATTAGTTGT 814
Query 621 GTCTCTGGTTCTTGTCACAATCTATGCTGATTATATTGCCCCTTTATTTGACAAATTCACACCTCTGCCTGAGG 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 GTCTCTGGTTCTTGTCACAATCTATGCTGATTATATTGCCCCTTTATTTGACAAATTCACACCTCTGCCTGAGG 888
Query 695 GAAAGCTTAAAGAAGAAATTGAAGTAATGGCAAAGAGTATTGACTTTCCTTTGACGAAGGTGTATGTTGTGGAA 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAAAGCTTAAAGAAGAAATTGAAGTAATGGCAAAGAGTATTGACTTTCCTTTGACGAAGGTGTATGTTGTGGAA 962
Query 769 G------------------------------------------------------------------------- 769
|
Sbjct 963 GTTTGCTTCAAATGCCAAACGACCGTAGAATGGTCGACATTGAGTTCTTCGGCAACTTCTTGTGTAGTTGTAAG 1036
Query 770 -------------------------------------------------------------------------- 769
Sbjct 1037 GGGATCAGCTCCGATGATTGCTCTCCATTGGTCATTGTCAACTTCCGATGGCCTGCCACTACGCTCCTCATCTT 1110
Query 770 ----------------------------------------------GATCTAAACGCTCTTCCCACAGCAATGC 797
||||||||||||||||||||||||||||
Sbjct 1111 CAAGGCTCTCATCTCCTTTGCAAACTTCTTGAACCACCACTGCGCTGATCTAAACGCTCTTCCCACAGCAATGC 1184
Query 798 TTATTTTTATGGCTTCTTCAAGAACAAGCGAATAGTTTTGTTTGACACTCTACTAGAAGAGTACTCTGTACTAA 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TTATTTTTATGGCTTCTTCAAGAACAAGCGAATAGTTTTGTTTGACACTCTACTAGAAGAGTACTCTGTACTAA 1258
Query 872 ACAAAGACATCCAGGAGGATTCTGGCATGGAACCCCGCAATGAGGAAGAAGGGAACAGTGAAGAAATAAAAGCT 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ACAAAGACATCCAGGAGGATTCTGGCATGGAACCCCGCAATGAGGAAGAAGGGAACAGTGAAGAAATAAAAGCT 1332
Query 946 AAAGTTAAAAATAAGAAACAAGGATGTAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGGGGCACTG 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AAAGTTAAAAATAAGAAACAAGGATGTAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGGGGCACTG 1406
Query 1020 GAAGTTGGGACATACAGTCAAAAATATCATTATTAGCCAGATGAATTCTTTCCTGTGTTTTTTTTTATTTGCTG 1093
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GAAGTTGGGACATACAGTCAAAAATATCATTATTAGCCAGATGAATTCTTTCCTGTGTTTTTTTTTATTTGCTG 1480
Query 1094 TATTAATTGGTCGAAAGGAGCTTTTTGCTGCATTTGGTTTTTATGATAGCCAACCCACTCTTATTGGACTATTG 1167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TATTAATTGGTCGAAAGGAGCTTTTTGCTGCATTTGGTTTTTATGATAGCCAACCCACTCTTATTGGACTATTG 1554
Query 1168 ATCATCTTCCAGTTTATTTTTTCACCTTACAATGAGGTTCTTTCTTTTTGCCTAACAGTCCTAAGCCGCAGATT 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 ATCATCTTCCAGTTTATTTTTTCACCTTACAATGAGGTTCTTTCTTTTTGCCTAACAGTCCTAAGCCGCAGATT 1628
Query 1242 TGAGTTTCAAGCTGATGCATTTGCCAAGAAACTTGGGAAGGCTAAAGACTTATATTCTGCTTTAATCAAACTTA 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TGAGTTTCAAGCTGATGCATTTGCCAAGAAACTTGGGAAGGCTAAAGACTTATATTCTGCTTTAATCAAACTTA 1702
Query 1316 ACAAAGATAACTTGGGATTCCCTGTTTCTGACTGGTTGTTCTCAATGTGGCATTATTCTCATCCTCCACTGCTA 1389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ACAAAGATAACTTGGGATTCCCTGTTTCTGACTGGTTGTTCTCAATGTGGCATTATTCTCATCCTCCACTGCTA 1776
Query 1390 GAGAGACTTCAAGCTTTGAAAACTATGAA-CAACAC-------------------------------------- 1424
||||||||||||||||||||||||||||| ||||||
Sbjct 1777 GAGAGACTTCAAGCTTTGAAAACTATGAAGCAACACTGAGATGTCCAGGATCTGTGACTGAAGACATTTCTGAT 1850
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 1851 TATTTCTGTCCTGGCAGCATGTTCCAGCTCTTGATGTTTTTAAACTTTTTTTTAGAAGAAAAATTAAGTACAGA 1924
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 1925 AAAGCCCAGATTTAAATACATTTAATATGTCATTTTAAAAATGATTTTAATAATTCATTTCTTAAAACACTGAA 1998
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 1999 TGAATTTTGAAGCTTAATGTTTTTAAAGGCATAGTTTTATCTTTGACATCTAATTTACCATCAAGTTGTAAAAT 2072
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2073 TATTTGGAAAAATACAGAACTCGTTTTATTTGTATACTTATATGGAATCTGCATGTGAGGTGTTTGAGGGCATA 2146
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2147 TGTTTGAAAGAGGGAGCATCACCACAGGAATCCTTTCTGTGAGGTGGAAACAGTGGTCCTGAATCATTGTGCTC 2220
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2221 ACACCTAACTTGAAATCTGGTCTTACTTTCATGCTGTTATGATTTCACCTGGTGAATCAGTGTTTTAAATAAGA 2294
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2295 AAGGTAATAGTTGGTAAGGCCAATGTTATTTAAATGAAAGTAGTTAGAAAAATGCTCTCCTATTCTACCAAATT 2368
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2369 TTTAATTTCTTTCTTCCCTTTCTTGCTACACAGTGATCAAGAGTTTCTCATAGTGCTTTGAAGTTAGAAATTAT 2442
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2443 GTATAGGATATTTTAAATCATTGAGTTTTGTGGGGTTTTTTTGTTTGTTTGTTTCTTTTGTTTTTTGGAAAATC 2516
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2517 CGTGTCTTTATCTTTTTTTCCCACGTGGTAGATATGATCCCATTGGAGGTAAATTGTAGCTTCTTCTCATTCAT 2590
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2591 GCAGTAAATAATACATCCTTTCACTCAGCAGAGATGGCCATATTAAACACGTTTTGCTATGTTAAAAGTGGCAG 2664
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2665 AACAGGAAAGACGAATTAAAAATAACATTTTTTAAGCGACATAAGGATGAAATACTGATGAATCTCTGTGACAT 2738
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2739 TACAGGGAAAAAAATATAGTTTTCTATCTCTTTCAAGGGCAGAAGAGTTTTCATTTTTATTTTTGTAATTTTAT 2812
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2813 CTGTAAGTCATAAATATTACTTAATCAGGCCTGATTCTACTTTTGAAAATTACAGTTCTTGAAATGCAGATAAT 2886
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2887 GTTTACTTTGAAAACAAATGTCATGAATGATTTCCAGTTTTTAAAGCTATATGTTTCACTGCTTCATATCTCTG 2960
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 2961 TCCACTTTCTGAATGAGAACTTATTTTGTGCCTAGAGCTCTCACTCACTGATAATGCTTATTACCTTCTGGGCA 3034
Query 1425 -------------------------------------------------------------------------- 1424
Sbjct 3035 TTTATTCCAAAGTGGGATCAACTGTACGCCTTTGGTATCTGACCATAAAGTCTTTTGCTCCGCTGACATTTGGG 3108
Query 1425 ------------------------------------------------ 1424
Sbjct 3109 TGATGTCTTCACATGGAAATATAATAAAAATAAAAATCTAGTTTAATA 3156
