Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14041
Subject:
XR_001736906.2
Aligned Length:
3156
Identities:
1421
Gaps:
1732

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGGGAGAGTCTGCAAGGGGAAGAGTGTGTCTGTGACACTGCCAGCAGCGCGCAGAGGGAGGGATGGGGGCGGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATCGGCGTAGGGGCCCTCGGAAAGAACGGATATTGCTGTGACACCGCGGGGACGCTCTGAAGGGACGAGTGTCG  148

Query    1  ----------------------------------------------ATGGGGATGTGGGCGTCGCTGGACGCTT  28
                                                          ||||||||||||||.|||||||||||||
Sbjct  149  GTGTGGCACCGGTGCACGCTGAAGGAGCCGGCGGAACCGGGTGGCCATGGGGATGTGGGCATCGCTGGACGCTT  222

Query   29  TGTGGGAGATGCCGGCCGAGAAGCGTATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCTTTGGGAG  102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  TGTGGGAGATGCCGGCCGAGAAGCGTATCTTCGGGGCCGTGCTGCTCTTTTCCTGGACAGTGTATCTTTGGGAG  296

Query  103  ACCTTCCTAGCACAGCGGCAGAGAAGGATATATAAAACAACAACTCATGTACCACCGGAGTTAGGACAGATCAT  176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ACCTTCCTAGCACAGCGGCAGAGAAGGATATATAAAACAACAACTCATGTACCACCGGAGTTAGGACAGATCAT  370

Query  177  GGATTCTGAAACATTTGAGAAATCTCGACTCTATCAACTGGATAAAAGCACTTTCAGCTTCTGGTCAGGACTCT  250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGATTCTGAAACATTTGAGAAATCTCGACTCTATCAACTGGATAAAAGCACTTTCAGCTTCTGGTCAGGACTCT  444

Query  251  ATTCAGAGACTGAAGGCACTCTTATTCTTCTCTTTGGAGGAATACCTTATCTCTGGAGACTTTCTGGACGGTTC  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  ATTCAGAGACTGAAGGCACTCTTATTCTTCTCTTTGGAGGAATACCTTATCTCTGGAGACTTTCTGGACGGTTC  518

Query  325  TGTGGTTATGCTGGCTTTGGACCAGAATATGAGATCACTCAGTCCCTGGTGTTTCTGCTGTTGGCTACACTTTT  398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  TGTGGTTATGCTGGCTTTGGACCAGAATATGAGATCACTCAGTCCCTGGTGTTTCTGCTGTTGGCTACACTTTT  592

Query  399  CAGTGCATTGGCTGGTTTGCCATGGAGTCTTTATAATACTTTTGTGATAGAAGAAAAACATGGCTTCAATCAAC  472
            ||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CAGTGCATTGACTGGTTTGCCATGGAGTCTTTATAATACTTTTGTGATAGAAGAAAAACATGGCTTCAATCAAC  666

Query  473  AGACTTTGGGGTTCTTCATGAAAGATGCAATCAAGAAATTTGTTGTGACTCAGTGCATTTTGTTGCCTGTGTCT  546
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct  667  AGACTTTGGGGTTCTTCATGAAAGATGCAATCAAGAAATTTGTTGTGACTCAGTGTATTTTGTTGCCTGTGTCT  740

Query  547  TCACTTCTACTTTACATTATTAAAATTGGGGGTGACTATTTTTTTATTTATGCCTGGCTGTTCACATTAGTTGT  620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  TCACTTCTACTTTACATTATTAAAATTGGGGGTGACTATTTTTTTATTTATGCCTGGCTGTTCACATTAGTTGT  814

Query  621  GTCTCTGGTTCTTGTCACAATCTATGCTGATTATATTGCCCCTTTATTTGACAAATTCACACCTCTGCCTGAGG  694
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GTCTCTGGTTCTTGTCACAATCTATGCTGATTATATTGCCCCTTTATTTGACAAATTCACACCTCTGCCTGAGG  888

Query  695  GAAAGCTTAAAGAAGAAATTGAAGTAATGGCAAAGAGTATTGACTTTCCTTTGACGAAGGTGTATGTTGTGGAA  768
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  GAAAGCTTAAAGAAGAAATTGAAGTAATGGCAAAGAGTATTGACTTTCCTTTGACGAAGGTGTATGTTGTGGAA  962

Query  769  G-------------------------------------------------------------------------  769
            |                                                                         
Sbjct  963  GTTTGCTTCAAATGCCAAACGACCGTAGAATGGTCGACATTGAGTTCTTCGGCAACTTCTTGTGTAGTTGTAAG  1036

Query  770  --------------------------------------------------------------------------  769
                                                                                      
Sbjct 1037  GGGATCAGCTCCGATGATTGCTCTCCATTGGTCATTGTCAACTTCCGATGGCCTGCCACTACGCTCCTCATCTT  1110

Query  770  ----------------------------------------------GATCTAAACGCTCTTCCCACAGCAATGC  797
                                                          ||||||||||||||||||||||||||||
Sbjct 1111  CAAGGCTCTCATCTCCTTTGCAAACTTCTTGAACCACCACTGCGCTGATCTAAACGCTCTTCCCACAGCAATGC  1184

Query  798  TTATTTTTATGGCTTCTTCAAGAACAAGCGAATAGTTTTGTTTGACACTCTACTAGAAGAGTACTCTGTACTAA  871
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TTATTTTTATGGCTTCTTCAAGAACAAGCGAATAGTTTTGTTTGACACTCTACTAGAAGAGTACTCTGTACTAA  1258

Query  872  ACAAAGACATCCAGGAGGATTCTGGCATGGAACCCCGCAATGAGGAAGAAGGGAACAGTGAAGAAATAAAAGCT  945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  ACAAAGACATCCAGGAGGATTCTGGCATGGAACCCCGCAATGAGGAAGAAGGGAACAGTGAAGAAATAAAAGCT  1332

Query  946  AAAGTTAAAAATAAGAAACAAGGATGTAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGGGGCACTG  1019
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AAAGTTAAAAATAAGAAACAAGGATGTAAAAATGAGGAGGTACTCGCTGTACTAGGCCATGAACTGGGGCACTG  1406

Query 1020  GAAGTTGGGACATACAGTCAAAAATATCATTATTAGCCAGATGAATTCTTTCCTGTGTTTTTTTTTATTTGCTG  1093
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  GAAGTTGGGACATACAGTCAAAAATATCATTATTAGCCAGATGAATTCTTTCCTGTGTTTTTTTTTATTTGCTG  1480

Query 1094  TATTAATTGGTCGAAAGGAGCTTTTTGCTGCATTTGGTTTTTATGATAGCCAACCCACTCTTATTGGACTATTG  1167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  TATTAATTGGTCGAAAGGAGCTTTTTGCTGCATTTGGTTTTTATGATAGCCAACCCACTCTTATTGGACTATTG  1554

Query 1168  ATCATCTTCCAGTTTATTTTTTCACCTTACAATGAGGTTCTTTCTTTTTGCCTAACAGTCCTAAGCCGCAGATT  1241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  ATCATCTTCCAGTTTATTTTTTCACCTTACAATGAGGTTCTTTCTTTTTGCCTAACAGTCCTAAGCCGCAGATT  1628

Query 1242  TGAGTTTCAAGCTGATGCATTTGCCAAGAAACTTGGGAAGGCTAAAGACTTATATTCTGCTTTAATCAAACTTA  1315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TGAGTTTCAAGCTGATGCATTTGCCAAGAAACTTGGGAAGGCTAAAGACTTATATTCTGCTTTAATCAAACTTA  1702

Query 1316  ACAAAGATAACTTGGGATTCCCTGTTTCTGACTGGTTGTTCTCAATGTGGCATTATTCTCATCCTCCACTGCTA  1389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  ACAAAGATAACTTGGGATTCCCTGTTTCTGACTGGTTGTTCTCAATGTGGCATTATTCTCATCCTCCACTGCTA  1776

Query 1390  GAGAGACTTCAAGCTTTGAAAACTATGAA-CAACAC--------------------------------------  1424
            ||||||||||||||||||||||||||||| ||||||                                      
Sbjct 1777  GAGAGACTTCAAGCTTTGAAAACTATGAAGCAACACTGAGATGTCCAGGATCTGTGACTGAAGACATTTCTGAT  1850

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 1851  TATTTCTGTCCTGGCAGCATGTTCCAGCTCTTGATGTTTTTAAACTTTTTTTTAGAAGAAAAATTAAGTACAGA  1924

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 1925  AAAGCCCAGATTTAAATACATTTAATATGTCATTTTAAAAATGATTTTAATAATTCATTTCTTAAAACACTGAA  1998

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 1999  TGAATTTTGAAGCTTAATGTTTTTAAAGGCATAGTTTTATCTTTGACATCTAATTTACCATCAAGTTGTAAAAT  2072

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2073  TATTTGGAAAAATACAGAACTCGTTTTATTTGTATACTTATATGGAATCTGCATGTGAGGTGTTTGAGGGCATA  2146

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2147  TGTTTGAAAGAGGGAGCATCACCACAGGAATCCTTTCTGTGAGGTGGAAACAGTGGTCCTGAATCATTGTGCTC  2220

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2221  ACACCTAACTTGAAATCTGGTCTTACTTTCATGCTGTTATGATTTCACCTGGTGAATCAGTGTTTTAAATAAGA  2294

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2295  AAGGTAATAGTTGGTAAGGCCAATGTTATTTAAATGAAAGTAGTTAGAAAAATGCTCTCCTATTCTACCAAATT  2368

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2369  TTTAATTTCTTTCTTCCCTTTCTTGCTACACAGTGATCAAGAGTTTCTCATAGTGCTTTGAAGTTAGAAATTAT  2442

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2443  GTATAGGATATTTTAAATCATTGAGTTTTGTGGGGTTTTTTTGTTTGTTTGTTTCTTTTGTTTTTTGGAAAATC  2516

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2517  CGTGTCTTTATCTTTTTTTCCCACGTGGTAGATATGATCCCATTGGAGGTAAATTGTAGCTTCTTCTCATTCAT  2590

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2591  GCAGTAAATAATACATCCTTTCACTCAGCAGAGATGGCCATATTAAACACGTTTTGCTATGTTAAAAGTGGCAG  2664

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2665  AACAGGAAAGACGAATTAAAAATAACATTTTTTAAGCGACATAAGGATGAAATACTGATGAATCTCTGTGACAT  2738

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2739  TACAGGGAAAAAAATATAGTTTTCTATCTCTTTCAAGGGCAGAAGAGTTTTCATTTTTATTTTTGTAATTTTAT  2812

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2813  CTGTAAGTCATAAATATTACTTAATCAGGCCTGATTCTACTTTTGAAAATTACAGTTCTTGAAATGCAGATAAT  2886

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2887  GTTTACTTTGAAAACAAATGTCATGAATGATTTCCAGTTTTTAAAGCTATATGTTTCACTGCTTCATATCTCTG  2960

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 2961  TCCACTTTCTGAATGAGAACTTATTTTGTGCCTAGAGCTCTCACTCACTGATAATGCTTATTACCTTCTGGGCA  3034

Query 1425  --------------------------------------------------------------------------  1424
                                                                                      
Sbjct 3035  TTTATTCCAAAGTGGGATCAACTGTACGCCTTTGGTATCTGACCATAAAGTCTTTTGCTCCGCTGACATTTGGG  3108

Query 1425  ------------------------------------------------  1424
                                                            
Sbjct 3109  TGATGTCTTCACATGGAAATATAATAAAAATAAAAATCTAGTTTAATA  3156

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