Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14174
Subject:
XR_001743496.2
Aligned Length:
4188
Identities:
284
Gaps:
3904

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGTTAAAAGGGGATTTGCCAGCTGGGATGGGGGAATTGGGAGGCAGATGGGGCTTCCAGGAGCGAGGATAGGGT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CGTTGGCCTCAGGTGCCGCTCTCCAGTTAGGAGTATTTTAGGCACCTCGTTCCTTATTGTCAGGTTTAACTTCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TTTGTTCTCCCACTTTATACCTTAGTGAATTTGTAGATGTGACAAGGCTTTCGCAGTTATATAGCTTTCCCAGA  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TCAGTATGTTAAGAATTTAAGCAGAAGTTATTGAGAAAAGCAGGTGTCTTGCTTTTTCACTTTTCGTTCTTCTT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGCTCATAAAACCTTTTTCTGAATCTCGGGACGACAGTTATCTTTCGGATGGAACGTGATCTGGATGTCTATCT  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  ACCTTATTGACTTAATCCTGTTTTGTAGTGGTTGGTTACTCGCACTATGCAGACGTGTTGCGGTGCTGAATACA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  ACATTTATTACTAAAGCCAGACACTGGATCACCGTCACGGCAGATGTCAGCACACCTGTTGTAATCAACTCATC  518

Query    1  -------------------------------------------------ATGCCTTCTGCAT----TGATACAC  21
                                                             |||||||||||||    ||||||||
Sbjct  519  TTTCAAGAGGACTTTAGACTAATTGCAGATAATTAAGGTGGTAGAGAATATGCCTTCTGCATCCTGTGATACAC  592

Query   22  TACTGGATGACATCGAAGATATCGTGTCTCAGGAAGATTCAAAACCACAAGATAGGCATTTTGTAAGAAAGGAT  95
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  TACTGGATGACATCGAAGATATCGTGTCTCAGGAAGATTCAAAACCACAAGATAGGCATTTTGTAAGAAAGGAT  666

Query   96  GTTGTCCCGAAGGTACGAAGGCGAAATACCCAAAAATATTTGCAAGAGGAAGAAAACAGTCCACCAAGTGACAG  169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  GTTGTCCCGAAGGTACGAAGGCGAAATACCCAAAAATATTTGCAAGAGGAAGAAAACAGTCCACCAAGTGACAG  740

Query  170  CACTATTCCAGGCATACAGAAAATTTGGATACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATA  243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  CACTATTCCAGGCATACAGAAAATTTGGATACGAACATGGGGTTGTTCTCATAATAATTCAGATGGAGAATATA  814

Query  244  TGGCTGGACAGCTAGCTGCTTATGGCTATAAAATTACAGGTGAA------------------------------  287
            ||||||||||||||||||||||||||||||||||||||   |||                              
Sbjct  815  TGGCTGGACAGCTAGCTGCTTATGGCTATAAAATTACA---GAAAATGCATCCGATGCAGATTTATGGCTCCTG  885

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct  886  AACAGTTGCACTGTAAAAAACCCAGCTGAAGACCACTTTAGAAACTCAATTAAAAAAGCTCAAGAGGAGAACAA  959

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct  960  GAAAATCGTACTGGCTGGATGCGTTCCTCAAGCCCAGCCTCGCCAGGACTACCTTAAGGGACTGAGTATCATTG  1033

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1034  GGGTTCAGCAGATAGATCGTGTGGTAGAAGTTGTGGAGGAGACAATTAAAGGTCACTCTGTGAGACTGCTGGGT  1107

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1108  CAGAAAAAGGATAATGGAAGGCGGCTTGGGGGAGCACGATTGGATTTGCCGAAGATTAGGAAGAATCCACTGAT  1181

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1182  AGAAATCATTTCCATCAATACCGGGTGTCTCAATGCTTGTACCTACTGCAAAACTAAACACGCCAGAGGAAATT  1255

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1256  TGGCCAGTTATCCAATTGATGAACTAGTAGATAGAGCCAAACAATCTTTTCAAGAGGGTGTTTGTGAGATATGG  1329

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1330  TTGACCAGTGAAGACACGGGGGCTTATGGCAGAGATATTGGCACCAATCTCCCCACACTCCTGTGGAAACTGGT  1403

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1404  TGAAGTGATTCCTGAGGGAGCAATGCTGAGGCTTGGCATGACAAATCCGCCCTATATTTTAGAGCATCTGGAGG  1477

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1478  AAATGGCAAAAATCCTTAATCACCCCAGAGTCTACGCTTTTCTGCACATACCAGTCCAGTCTGCCTCCGACAGC  1551

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1552  GTACTCATGGAAATGAAAAGAGAATACTGTGTGGCTGACTTCAAAAGAGTAGTGGATTTTCTGAAAGAGAAAGT  1625

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1626  TCCTGGAATAACTATTGCTACAGATATTATCTGTGGTTTTCCTGGAGAAACAGATCAGGATTTTCAAGAAACAG  1699

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1700  TGAAACTTGTTGAAGAGTACAAATTCCCAAGCCTGTTTATTAACCAATTTTACCCAAGACCAGGAACTCCTGCT  1773

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1774  GCAAAAATGGAACAAGTTCCAGCACAAGTGAAAAAGCAAAGGACAAAAGATCTTTCTCGGGTGTTTCATTCTTA  1847

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1848  CAGTCCATATGATCACAAGATTGGTGAAAGACAACAAGTGTTAGTAACAGAAGAATCTTTTGATTCCAAGTTTT  1921

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1922  ATGTTGCACACAATCAATTCTATGAGCAGATAAGAGGTGAAAATGTTTGCTATGGATCATGGCTGGAATTAGAG  1995

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 1996  CTTGAGAAGATGCTGAAGGCCAAGGTGGACAAGTCGGATGAGGGATGGGCAGAGGAAGCAGGCTGCCTGTGTCA  2069

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2070  GAAGGCAGGAAAGCAGGAGCTGAAGAGGCCCCCAGCATTGACATTCCCCAGGGAATCATCTCAGACTGGGCAGT  2143

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2144  GCGTCCCCAGGAAACAGGGGAGCTTTTCAAAGCCCAGACTAAACGTGCTCTGTTCAGTACCGGTGGAGACTGCA  2217

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2218  GTTGAGGAAGGGCTCCCAGCACTCCATGTCTGGCCTGCATCGCTTCCCCATTTCCCCATCTCATTAATATACCC  2291

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2292  CAGAGGGCCATTTTCCTATTCAGGCCAACCTTCTGCTCAGCCCTGGGGAGGAGCTTGATTGCATTTTGGTTGCC  2365

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2366  TCTTCTCTCTCCTTTCTCTTGCCATCTGGGTTTTGCCTCAGCAGGGAACTTTTTTCCCTTCATTTTAAAGGCAG  2439

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2440  TGGCATGCCTCGTTAGCTGCTTCCTCCAATTTAAAGCAGTCGGGCTTTTTCCAATTATTAAAACTGGAGGAGGG  2513

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2514  GAAAACACTGAGCCCTTCATTCAGATCAAGGCAGCAGATCAAGGAGGGTTATTTTTCCCCAGAATAGTACCAAA  2587

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2588  TCTCCCAGGGTTAGTTTGGTCTAGAGATTTTCTTATTTTATAAAAACTGATTTAAATGGGCTTTTTATATCCTA  2661

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2662  ACACTAAAGCTCTTTTAGTTCTTTTTGCCTGCCCTAAGTAATTCACCACCCAGGTGACCTTTTTCTTCTACTTT  2735

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2736  GATGAAGCAGTGTACTCAGTGGTCATAAAAATCAAACTCAGACCAAGATTCAATTTTGCCTTTCAGAGAGATTG  2809

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2810  GCTGTGGAACTCCTGGCTCTCATCTGACTTTTCTGTCTCTATAACTAAGCATATCAAAGATTTTCTAGGAATTA  2883

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2884  TTTTTCTAAATAAGATGAGTTCCAGAGATGAAGATTGTATCTAGATATCCAAGTATTACTGGATTAGAACTGGT  2957

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 2958  CTATTTATTTTGGATTCTAACTTGAAAAGACTGGCAAGTCGCTGCAGTGCTAAAATAGAAGTGTAAGGGAGACA  3031

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3032  TCACACACACAAGCTACCTGTGGGTCCCAAAGGAAGGGAAACGTTTGCTTGAAGTAAACAAGTACTTTTATCAG  3105

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3106  GAATCTCTAGTGGAAAGAGACCACCTGACAGTTTCCTGTGAACAAGCCAAAGTACCCTTCAGAGGACTGGTTCT  3179

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3180  AGATGGAGGTAGATTCCCAGGACTGACAAACACATGCCTTTTCTAACAGAGCAAGGGAAATGAACGGCAGCTGT  3253

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3254  TAGTTTCAGGAGTCATTTAGCTCCAAACAGCAGTGTACAGTGTTATTGGAAGGTTCTTTTAAATGTACCTCCTT  3327

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3328  CTCCCTCAAAACACAGCACACACATGCACGGACACAAACACGCAGGCCTGTTTGAAGTGTCTTTTCAAACCATT  3401

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3402  ACTCTGACAGCTCACTTGGAAAGTATTAAAAGTATAAGGCTTTCATCAGTATTGTCTCGGTTTTCCTCATTGCA  3475

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3476  TGGAATAGCCAAAAGCAAGATATCAAAGGCCTGTCCAGAAGTGGCTGGCTGATTGCTGGGGGATTTCCCAGGTC  3549

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3550  TGCCTTCCACGTGCCTCAGGACATCAGGCACATCCTGCACTGGAAAAGCACTGCCCAGGGGCCCAGGAGCCCCT  3623

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3624  CCCAGGAGTGCCTTTCCTTCCTGCAGGCTCTGCAGACCCTTGAGCAGCTAGAAGATAGAGTCCACTTTGTAGGG  3697

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3698  GATCCCAGAACAGAAAAATGACATTGAGGGACAATGAGGAAACCTGGATAATTAGGTTTTAGTGCCAAAGAACC  3771

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3772  CTGCGTTCATGGGGAAGATGGTTGAAGTGGACATCTATGAATCAGGCAAACATTTTATGAAAGGGCAGCCAGTA  3845

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3846  TCTGATGCCAAAGTGTACACGCCCTCCATCAGCAAACCGCTAGCAAAGGGAGAAGTCTCGGGTTTGACAAAGGA  3919

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3920  CTTCAGAAATGGGCTTGGGAACCAGCTGAGTTCAGGATCCCACACCTCTGCTGCATCTCAGTGTGACTCAGCGA  3993

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 3994  GTTCCAGAATGGTGCTGCCCATGCCAAGGCTACATCAAGACTGTGCGCTGAGGATGTCCGTGGGCTTGGCTCTG  4067

Query  288  --------------------------------------------------------------------------  287
                                                                                      
Sbjct 4068  CTGGGTCTTCTTTTTGCTTTTTTTGTCAAGGTCTATAATTAGAATACAACTAATGGAAACATCTATAAAGAAGA  4141

Query  288  --------------------------------------------  287
                                                        
Sbjct 4142  ATACATTTCTAATTAAAATCTTCAATGAACAGGAAAGCGACATC  4185

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.