Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14311
• Subject: XM_006530261.3
• Aligned Length: 2205
• Identities: 1470
• Gaps: 408

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGCGTAGCTCTGAGGGCGCGCCGTCCTGGGCTGTGGCTTTGCCCCCGCCGCTGCGGCCGTGCGCCTATGGCGT  74

Query    1  -------------------------------------------------------ATGAACCCTCCGGCAGCCT  19
                                                                   |||||||||.||||..|||
Sbjct   75  CTCGGAGGTGACCCGCTGCTGGCACCAACTCTCTCTGGGGGCGGGGGAGTCATCCATGAACCCTTCGGCGACCT  148

Query   20  T---CCTTGCCGGGCGCCAGAACATCGGGTCAGAAGTTGAGATTTCCACTATCGAGAAACAACGGAAGGAGCTG  90
            |   ||      ||||||||||||||||.|||||||||||||.|||||||||.|||||.||.||||||||.||.
Sbjct  149  TATACC------GGCGCCAGAACATCGGATCAGAAGTTGAGACTTCCACTATTGAGAAGCAGCGGAAGGAACTT  216

Query   91  CAGTTGCTCATTGGAGAATTAAAAGATCGAGATAAAGAGCTCAATGACATGGTTGCAGTGCACCAGCAACAGCT  164
            |||.|||||||.||.||..|.|||||.||.|||||.|||||||||||||||||.||||||||.|||...|||||
Sbjct  217  CAGCTGCTCATCGGGGAGCTGAAAGACCGCGATAAGGAGCTCAATGACATGGTCGCAGTGCATCAGAGGCAGCT  290

Query  165  TCTTTCATGGGAAGAGGATCGGCAGAAAGTGTTGACACTGGAAGAACGTTGCAGCAAATTAGAAGGTGAACTAC  238
            |||.||.|||||||||||.||||||||||||.||||.|||||.||.||.||||||||..|.||||||||.||.|
Sbjct  291  TCTCTCCTGGGAAGAGGACCGGCAGAAAGTGCTGACCCTGGAGGAGCGCTGCAGCAAGCTCGAAGGTGAGCTGC  364

Query  239  ATAAAAGAACTGAAATAATCAGGTAGACT--CCAAGAAGGTAAAAGCTCTTGAATCACAATCAAATGGAATGCC  310
            |||||||.|||||.|||||||.|| .|||  ..||||||||.||..|.||.||.|| |||||||...||.||||
Sbjct  365  ATAAAAGGACTGACATAATCAAGT-CACTGATGAAGAAGGTCAAGACCCTGGAGTC-CAATCAAGCAGAGTGCC  436

Query  311  AAACAGCTCTCCAAAAGACCCAACTACAGCTTCAGGAAATGGCTCAAAAGGCAACGCATTCTTCTCTTCTCTCT  384
            |.||||||||.||.|||||.||.|..|||||.|||||.||||||||.|||||.||.||.||..|.||.|||||.
Sbjct  437  AGACAGCTCTTCAGAAGACGCAGCAGCAGCTCCAGGAGATGGCTCAGAAGGCCACACACTCCACCCTCCTCTCG  510

Query  385  GAAGACCTTGAGGCTAGAAACGAAACTCTCAGCAACACGTTAGTGGAACTTTCTGCCCAGGTAGGACAGCTACA  458
            ||||||||||||||||||||.||||.||||||||.||||||||||||.||.|||||.|||||||||||..|.||
Sbjct  511  GAAGACCTTGAGGCTAGAAATGAAAATCTCAGCAGCACGTTAGTGGACCTCTCTGCTCAGGTAGGACAATTGCA  584

Query  459  AGCTCGAGAACAAGCTCTTACGACAATGATAAAGCTAAAGGACAAAGATATTATTGAGGCAGTTAATCACATTG  532
            ||||.||||.||.|||||.||.||.|||||||||||||||||||||||.|||||||||||.||.|||||||||.
Sbjct  585  AGCTAGAGAGCAGGCTCTCACTACCATGATAAAGCTAAAGGACAAAGACATTATTGAGGCCGTCAATCACATTT  658

Query  533  CAGATTGTTCGGGTAAATTTAAAATGCTAGAGCATGCCCTACGTGATGCCAAGATGGCGGAGACTTGTATTGTG  606
            ||||.||.|||||||||||||||.||.|||||||.||..|||||||||||||||||||||||||.|||.|.|||
Sbjct  659  CAGACTGCTCGGGTAAATTTAAATTGTTAGAGCACGCTTTACGTGATGCCAAGATGGCGGAGACGTGTGTGGTG  732

Query  607  AAAGAAAAGCAAGATTATAAGCAGAAATTGAAGGCACTTAAGATTGAAGTCAACAAACTAAAAGAGGACCTCAA  680
            |.||||||||||||||||||||||||||||||||||||||.||||||||||||.|||||.||||||||.||.||
Sbjct  733  AGAGAAAAGCAAGATTATAAGCAGAAATTGAAGGCACTTAGGATTGAAGTCAATAAACTGAAAGAGGATCTAAA  806

Query  681  TGAAAAGACGACAGAAAATAATGAGCAACGAGAAGAGATCATTCGCCTCAAGCAAGAGAAAAGTTGCCTGCACG  754
            |||.|||||.||||||||.|||||.||||||||.|||||.|||||.|||||||||||||||||.||.||.||.|
Sbjct  807  TGAGAAGACAACAGAAAACAATGAACAACGAGAGGAGATAATTCGACTCAAGCAAGAGAAAAGCTGTCTACATG  880

Query  755  ATGAATTGCTTTTTACTGTAGAGAGAGAAAAGAGGAAAGATGAATTGCTTAATATTGCGAAGTCAAAGCAAGAA  828
            ||||..|..||||||||||.|||||.||||||||||||||||||||.|||.|||||||.||||||||||||||.
Sbjct  881  ATGAGCTAATTTTTACTGTTGAGAGGGAAAAGAGGAAAGATGAATTACTTGATATTGCAAAGTCAAAGCAAGAT  954

Query  829  CGCACAAATTCAGAACTGCACAATCTGAGACAGATTTATGTAAAACAACAGAGTGATCTGCAGTTTCTTAATTT  902
            ||.||||||||.||.||.||.||||||||||||||||||||||||||.||||||||.|||||||||||||||||
Sbjct  955  CGTACAAATTCCGAGCTCCAGAATCTGAGACAGATTTATGTAAAACAGCAGAGTGACCTGCAGTTTCTTAATTT  1028

Query  903  CAATGTGGAAAATTCTCAGGAATTAATACAGATGTATGACTCAAAGATGGAGGAATCAAAGGCTCTGGACTCCA  976
            ||||.|.||||.||||||||||||||||||.||..|||.||.|||||||||||||.|||||||.|||       
Sbjct 1029  CAATATAGAAAGTTCTCAGGAATTAATACAAATACATGGCTTAAAGATGGAGGAACCAAAGGCCCTG-------  1095

Query  977  GCAGAGACATGTGTTTATCAGACCTTGAAAATAACCACCCAAAAGTCGATATTAAGAGGGAAAAAAATCAGAAG  1050
                                                                                      
Sbjct 1096  --------------------------------------------------------------------------  1095

Query 1051  TCACTGTTTAAGGACCAGAAATTTGAAGCCATGTTGGTTCAGCAAAATAGGTCAGACAAGAGCTCTTGCGATGA  1124
                                                                                    ||
Sbjct 1096  ------------------------------------------------------------------------GA  1097

Query 1125  ATGCAAAGAGAAGAAACAACAGATCGATACTGTGTTTGGGGAGAAAAGTGTAATTAAGCTGTCATCCATATTCA  1198
            .||||.|||||||||.|.||||.|..|.||||...|.|||||.||||||||||||...||.|||||..||||.|
Sbjct 1098  GTGCAGAGAGAAGAAGCTACAGGTTAACACTGCACTCGGGGAAAAAAGTGTAATTGCTCTCTCATCTCTATTTA  1171

Query 1199  CCAAAGACTTAGTAGAGAAACACAACCTCCCTTGGTCTCTGGGAGGAAAAACCCAGATTGAACCCGAAAACAAA  1272
            |||||||||||.|.||.|||||.||   ..|||||||||||||.||.||||.|||||.||||||.|||||||||
Sbjct 1172  CCAAAGACTTACTGGACAAACAAAA---GTCTTGGTCTCTGGGTGGGAAAATCCAGACTGAACCGGAAAACAAA  1242

Query 1273  ATTACATTGTGCAAGATCCACACAAAATCACCAAAATGTCATGGCACTGGGG-TTCAGAAC-GAAGGAAAACAA  1344
            .||||..|.||||||.||||..||||.|||||||||||..|||| |.||||| ||| .||| ||||..||.||.
Sbjct 1243  GTTACCCTATGCAAGGTCCATGCAAAGTCACCAAAATGCGATGG-AGTGGGGCTTC-CAACGGAAGAGAAGCAG  1314

Query 1345  CCCTCAGAAACACC---CACTTTATCTGATGAGAAGCAGTGGCATGATGTCAGTGTTTACCTGGGCCTGACCAA  1415
            |.|||.|||||..|   |.|..|.|||||.|||||||||||||||||..|||..||.|||||||||||..|||.
Sbjct 1315  CTCTCGGAAACCTCCGTCTCGCTGTCTGACGAGAAGCAGTGGCATGACATCAACGTCTACCTGGGCCTTTCCAG  1388

Query 1416  CTGTCCAAGTTCAAAACATCCAGAAAAGCTGGATGTAGAATGTCAAGATCAGATGGAAAGG----TCCGAAATC  1485
            ||      |.||||||||.|||||.|.||||||.|..||..|.||.||.|    |.|.|||    ||.||..||
Sbjct 1389  CT------GCTCAAAACAGCCAGACAGGCTGGACGGGGATGGCCACGACC----GCACAGGAACATCTGAGGTC  1452

Query 1486  TCATGCTGCCAGAA----AAATGAAGCCTGTCTGGGCGAAAGTGGCATGTGTGACTCCAAGTGCTGCCACCCGA  1555
            ||.||||||    |    |||||.||.||||.|.||.||.|.||.|.|||..||.|||||||||||||||||.|
Sbjct 1453  TCCTGCTGC----ACCCCAAATGTAGTCTGTATAGGTGACAATGACCTGTCCGAGTCCAAGTGCTGCCACCCAA  1522

Query 1556  GTAACTTCATAATTGAAGCCCCAGGCCACATGTCTGACGTGGAGTGGATGAGTATTTTCAAGCCTTCCAAAATG  1629
            |||||.||||.||.|||||||||||.||.|||.||||....||||||||||.|||||||||||||||||.|...
Sbjct 1523  GTAACATCATCATCGAAGCCCCAGGACATATGACTGATACAGAGTGGATGAATATTTTCAAGCCTTCCAGAGCA  1596

Query 1630  CAGAGAATTGTCCGCCTCAAATCTGGGTGCACCTGTTCAGAAAGCATCTGT-GGCACA---CAACATGACTCCC  1699
            ||.||.|||||.||||.||||.|...||||||.||||||..|||    ||| .||.||   .||.||.|.|||.
Sbjct 1597  CAAAGGATTGTTCGCCACAAAACCATGTGCACTTGTTCAAGAAG----TGTCAGCGCAATGAAATATAATTCCT  1666

Query 1700  CGGCAAGTGAGCTAATTGCCATCCAAGATTCCCACTCTTTGGGTTCTTCAAAATCTGCCTTG--AGAGAAGATG  1771
            |.|||||||||||.||||.|||.||...||||||.|.|.|||||||.|.|||.|||||  ||  ||||||||.|
Sbjct 1667  CAGCAAGTGAGCTCATTGGCATGCAGCCTTCCCAGTGTGTGGGTTCCTTAAAGTCTGC--TGAAAGAGAAGAGG  1738

Query 1772  AGACGGAGTCCTCTTCCAATAAAAAGAACTCACCTACGAGTTTGTTAATCTACAAAGATGCACCAGCATTCAAT  1845
            ||.|.|.|.|| |||||....|.||||    ||||                            ||||   ||||
Sbjct 1739  AGTCAGCGGCC-CTTCCTGACAGAAGA----ACCT----------------------------CAGC---CAAT  1776

Query 1846  GAAAAGGCTTCAATTGTGTTACCCTCCCAGGATGATTTCTCGCCCACGAGCAAGCTCCAGCGTTTGCTGGCGGA  1919
            ||||                        |||||||.|||||.||.|||||.|||||||||||..|||||||.||
Sbjct 1777  GAAA------------------------AGGATGACTTCTCTCCTACGAGTAAGCTCCAGCGGCTGCTGGCCGA  1826

Query 1920  ATCTCGTCAGATGGTGACGGACCTGGAGCTGAGCACACTGCTGCCCATCAGCCATGAGAATCTCACTGGCAGTG  1993
            .||.||.||||||||.|||||.||||||||||||||.|||||.|||||||||...||||||||||         
Sbjct 1827  GTCCCGGCAGATGGTCACGGATCTGGAGCTGAGCACGCTGCTACCCATCAGCTGCGAGAATCTCA---------  1891

Query 1994  CCACAAATAAGTCAGAGGTCCCAGAAGAGTCAGCTCAAAAAAATACCTTTGTCAGTTAT  2052
            .||.||..||.|.|||.|||.||||||||.|||.|.||||||..|||.||||||||.||
Sbjct 1892  ACAGAAGCAAATTAGAAGTCTCAGAAGAGCCAGATGAAAAAACCACCCTTGTCAGTCAT  1950