Construct: ORF ccsbBroad304_14311
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003904.1_s304c1, BRDN0000461684
- Derived from:
- ccsbBroadEn_14311
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CCDC62 (84660)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14311
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 84660 | CCDC62 | coiled-coil domain containi... | NM_201435.5 | 99.6% | 12.7% | (many diffs) |
| 2 | human | 84660 | CCDC62 | coiled-coil domain containi... | XM_006719643.2 | 99.6% | 12.7% | (many diffs) |
| 3 | human | 84660 | CCDC62 | coiled-coil domain containi... | XM_011538856.2 | 99.5% | 12.7% | (many diffs) |
| 4 | human | 84660 | CCDC62 | coiled-coil domain containi... | XM_006719644.2 | 97.7% | 12.7% | (many diffs) |
| 5 | human | 84660 | CCDC62 | coiled-coil domain containi... | XM_017020033.2 | 94.6% | 13.3% | (many diffs) |
| 6 | human | 84660 | CCDC62 | coiled-coil domain containi... | XM_011538857.2 | 92.3% | 13.7% | (many diffs) |
| 7 | human | 84660 | CCDC62 | coiled-coil domain containi... | NR_027918.3 | 83.1% | (many diffs) | |
| 8 | human | 84660 | CCDC62 | coiled-coil domain containi... | XR_001748904.2 | 80.8% | (many diffs) | |
| 9 | human | 84660 | CCDC62 | coiled-coil domain containi... | XR_944784.2 | 80.7% | (many diffs) | |
| 10 | human | 84660 | CCDC62 | coiled-coil domain containi... | XM_011538859.2 | 54.4% | 7.4% | 0_1ins933;248C>A |
| 11 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | NM_001134767.1 | 72.4% | 11.1% | (many diffs) |
| 12 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530255.3 | 72.4% | 11.1% | (many diffs) |
| 13 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530256.3 | 71.3% | 11.1% | (many diffs) |
| 14 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530257.3 | 70.4% | 11.4% | (many diffs) |
| 15 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530258.3 | 68.6% | 11.6% | (many diffs) |
| 16 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530259.3 | 68.5% | 11.6% | (many diffs) |
| 17 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530260.3 | 68.2% | 11.7% | (many diffs) |
| 18 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_017320780.1 | 68.2% | 11.7% | (many diffs) |
| 19 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530261.3 | 66.6% | 11.9% | (many diffs) |
| 20 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530265.3 | 35.4% | 22.2% | (many diffs) |
| 21 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530266.3 | 34.8% | 22.3% | (many diffs) |
| 22 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530268.2 | 34.2% | 22.4% | (many diffs) |
| 23 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530269.2 | 34.2% | 22.4% | (many diffs) |
| 24 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530273.2 | 33.6% | 23.2% | (many diffs) |
| 25 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530274.2 | 33.6% | 23.2% | (many diffs) |
| 26 | mouse | 208908 | Ccdc62 | coiled-coil domain containi... | XM_006530271.3 | 33.5% | 23.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 327
- ORF length:
- 261
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgaa ccctccggca gccttccttg ccgggcgcca gaacatcggg tcagaagttg 121 agatttccac tatcgagaaa caacggaagg agctgcagtt gctcattgga gaattaaaag 181 atcgagataa agagctcaat gacatggttg cagtgcacca gcaacagctt ctttcatggg 241 aagaggatcg gcagaaagtg ttgacactgg aagaacgttg cagcaaatta gaaggtgaac 301 tacataaaag aactgaaata atcaggtaga ctccaagaag gtaaaagctc ttgaatcaca 361 atcaaatgga atgccaaaca gctctccaaa agacccaact acagcttcag gaaatggctc 421 aaaaggcaac gcattcttct cttctctctg aagaccttga ggctagaaac gaaactctca 481 gcaacacgtt agtggaactt tctgcccagg taggacagct acaagctcga gaacaagctc 541 ttacgacaat gataaagcta aaggacaaag atattattga ggcagttaat cacattgcag 601 attgttcggg taaatttaaa atgctagagc atgccctacg tgatgccaag atggcggaga 661 cttgtattgt gaaagaaaag caagattata agcagaaatt gaaggcactt aagattgaag 721 tcaacaaact aaaagaggac ctcaatgaaa agacgacaga aaataatgag caacgagaag 781 agatcattcg cctcaagcaa gagaaaagtt gcctgcacga tgaattgctt tttactgtag 841 agagagaaaa gaggaaagat gaattgctta atattgcgaa gtcaaagcaa gaacgcacaa 901 attcagaact gcacaatctg agacagattt atgtaaaaca acagagtgat ctgcagtttc 961 ttaatttcaa tgtggaaaat tctcaggaat taatacagat gtatgactca aagatggagg 1021 aatcaaaggc tctggactcc agcagagaca tgtgtttatc agaccttgaa aataaccacc 1081 caaaagtcga tattaagagg gaaaaaaatc agaagtcact gtttaaggac cagaaatttg 1141 aagccatgtt ggttcagcaa aataggtcag acaagagctc ttgcgatgaa tgcaaagaga 1201 agaaacaaca gatcgatact gtgtttgggg agaaaagtgt aattaagctg tcatccatat 1261 tcaccaaaga cttagtagag aaacacaacc tcccttggtc tctgggagga aaaacccaga 1321 ttgaacccga aaacaaaatt acattgtgca agatccacac aaaatcacca aaatgtcatg 1381 gcactggggt tcagaacgaa ggaaaacaac cctcagaaac acccacttta tctgatgaga 1441 agcagtggca tgatgtcagt gtttacctgg gcctgaccaa ctgtccaagt tcaaaacatc 1501 cagaaaagct ggatgtagaa tgtcaagatc agatggaaag gtccgaaatc tcatgctgcc 1561 agaaaaatga agcctgtctg ggcgaaagtg gcatgtgtga ctccaagtgc tgccacccga 1621 gtaacttcat aattgaagcc ccaggccaca tgtctgacgt ggagtggatg agtattttca 1681 agccttccaa aatgcagaga attgtccgcc tcaaatctgg gtgcacctgt tcagaaagca 1741 tctgtggcac acaacatgac tccccggcaa gtgagctaat tgccatccaa gattcccact 1801 ctttgggttc ttcaaaatct gccttgagag aagatgagac ggagtcctct tccaataaaa 1861 agaactcacc tacgagtttg ttaatctaca aagatgcacc agcattcaat gaaaaggctt 1921 caattgtgtt accctcccag gatgatttct cgcccacgag caagctccag cgtttgctgg 1981 cggaatctcg tcagatggtg acggacctgg agctgagcac actgctgccc atcagccatg 2041 agaatctcac tggcagtgcc acaaataagt cagaggtccc agaagagtca gctcaaaaaa 2101 atacctttgt cagttattgc ccaactttct tgtacaaagt ggttggtaag cctatcccta 2161 accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta 2221 agtcgacaat caacctctgg atta