Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14311
- Subject:
- XM_017320780.1
- Aligned Length:
- 2206
- Identities:
- 1505
- Gaps:
- 374
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGCGTAGCTCTGAGGGCGCGCCGTCCTGGGCTGTGGCTTTGCCCCCGCCGCTGCGGCCGTGCGCCTATGGCGT 74
Query 1 -------------------------------------------------------ATGAACCCTCCGGCAGCCT 19
|||||||||.||||..|||
Sbjct 75 CTCGGAGGTGACCCGCTGCTGGCACCAACTCTCTCTGGGGGCGGGGGAGTCATCCATGAACCCTTCGGCGACCT 148
Query 20 T---CCTTGCCGGGCGCCAGAACATCGGGTCAGAAGTTGAGATTTCCACTATCGAGAAACAACGGAAGGAGCTG 90
| || ||||||||||||||||.|||||||||||||.|||||||||.|||||.||.||||||||.||.
Sbjct 149 TATACC------GGCGCCAGAACATCGGATCAGAAGTTGAGACTTCCACTATTGAGAAGCAGCGGAAGGAACTT 216
Query 91 CAGTTGCTCATTGGAGAATTAAAAGATCGAGATAAAGAGCTCAATGACATGGTTGCAGTGCACCAGCAACAGCT 164
|||.|||||||.||.||..|.|||||.||.|||||.|||||||||||||||||.||||||||.|||...|||||
Sbjct 217 CAGCTGCTCATCGGGGAGCTGAAAGACCGCGATAAGGAGCTCAATGACATGGTCGCAGTGCATCAGAGGCAGCT 290
Query 165 TCTTTCATGGGAAGAGGATCGGCAGAAAGTGTTGACACTGGAAGAACGTTGCAGCAAATTAGAAGGTGAACTAC 238
|||.||.|||||||||||.||||||||||||.||||.|||||.||.||.||||||||..|.||||||||.||.|
Sbjct 291 TCTCTCCTGGGAAGAGGACCGGCAGAAAGTGCTGACCCTGGAGGAGCGCTGCAGCAAGCTCGAAGGTGAGCTGC 364
Query 239 ATAAAAGAACTGAAATAATCAGGTAGACT--CCAAGAAGGTAAAAGCTCTTGAATCACAATCAAATGGAATGCC 310
|||||||.|||||.|||||||.|| .||| ..||||||||.||..|.||.||.|| |||||||...||.||||
Sbjct 365 ATAAAAGGACTGACATAATCAAGT-CACTGATGAAGAAGGTCAAGACCCTGGAGTC-CAATCAAGCAGAGTGCC 436
Query 311 AAACAGCTCTCCAAAAGACCCAACTACAGCTTCAGGAAATGGCTCAAAAGGCAACGCATTCTTCTCTTCTCTCT 384
|.||||||||.||.|||||.||.|..|||||.|||||.||||||||.|||||.||.||.||..|.||.|||||.
Sbjct 437 AGACAGCTCTTCAGAAGACGCAGCAGCAGCTCCAGGAGATGGCTCAGAAGGCCACACACTCCACCCTCCTCTCG 510
Query 385 GAAGACCTTGAGGCTAGAAACGAAACTCTCAGCAACACGTTAGTGGAACTTTCTGCCCAGGTAGGACAGCTACA 458
||||||||||||||||||||.||||.||||||||.||||||||||||.||.|||||.|||||||||||..|.||
Sbjct 511 GAAGACCTTGAGGCTAGAAATGAAAATCTCAGCAGCACGTTAGTGGACCTCTCTGCTCAGGTAGGACAATTGCA 584
Query 459 AGCTCGAGAACAAGCTCTTACGACAATGATAAAGCTAAAGGACAAAGATATTATTGAGGCAGTTAATCACATTG 532
||||.||||.||.|||||.||.||.|||||||||||||||||||||||.|||||||||||.||.|||||||||.
Sbjct 585 AGCTAGAGAGCAGGCTCTCACTACCATGATAAAGCTAAAGGACAAAGACATTATTGAGGCCGTCAATCACATTT 658
Query 533 CAGATTGTTCGGGTAAATTTAAAATGCTAGAGCATGCCCTACGTGATGCCAAGATGGCGGAGACTTGTATTGTG 606
||||.||.|||||||||||||||.||.|||||||.||..|||||||||||||||||||||||||.|||.|.|||
Sbjct 659 CAGACTGCTCGGGTAAATTTAAATTGTTAGAGCACGCTTTACGTGATGCCAAGATGGCGGAGACGTGTGTGGTG 732
Query 607 AAAGAAAAGCAAGATTATAAGCAGAAATTGAAGGCACTTAAGATTGAAGTCAACAAACTAAAAGAGGACCTCAA 680
|.||||||||||||||||||||||||||||||||||||||.||||||||||||.|||||.||||||||.||.||
Sbjct 733 AGAGAAAAGCAAGATTATAAGCAGAAATTGAAGGCACTTAGGATTGAAGTCAATAAACTGAAAGAGGATCTAAA 806
Query 681 TGAAAAGACGACAGAAAATAATGAGCAACGAGAAGAGATCATTCGCCTCAAGCAAGAGAAAAGTTGCCTGCACG 754
|||.|||||.||||||||.|||||.||||||||.|||||.|||||.|||||||||||||||||.||.||.||.|
Sbjct 807 TGAGAAGACAACAGAAAACAATGAACAACGAGAGGAGATAATTCGACTCAAGCAAGAGAAAAGCTGTCTACATG 880
Query 755 ATGAATTGCTTTTTACTGTAGAGAGAGAAAAGAGGAAAGATGAATTGCTTAATATTGCGAAGTCAAAGCAAGAA 828
||||..|..||||||||||.|||||.||||||||||||||||||||.|||.|||||||.||||||||||||||.
Sbjct 881 ATGAGCTAATTTTTACTGTTGAGAGGGAAAAGAGGAAAGATGAATTACTTGATATTGCAAAGTCAAAGCAAGAT 954
Query 829 CGCACAAATTCAGAACTGCACAATCTGAGACAGATTTATGTAAAACAACAGAGTGATCTGCAGTTTCTTAATTT 902
||.||||||||.||.||.||.||||||||||||||||||||||||||.||||||||.|||||||||||||||||
Sbjct 955 CGTACAAATTCCGAGCTCCAGAATCTGAGACAGATTTATGTAAAACAGCAGAGTGACCTGCAGTTTCTTAATTT 1028
Query 903 CAATGTGGAAAATTCTCAGGAATTAATACAGATGTATGACTCAAAGATGGAGGAATCAAAGGCTCTGGACTCCA 976
||||.|.||||.||||||||||||||||||.||..|||.||.|||||||||||||.|||||||.|||||.|.||
Sbjct 1029 CAATATAGAAAGTTCTCAGGAATTAATACAAATACATGGCTTAAAGATGGAGGAACCAAAGGCCCTGGAGTGCA 1102
Query 977 GCAGAGACATGTGTTTATCAGACCTTGAAAATAACCACCCAAAAGTCGATATTAAGAGGGAAAAAAATCAGAAG 1050
|||..|||||||||||||||||||||||.||||||.||||||||.||||||||||.||.||.|.||||||||||
Sbjct 1103 GCAAGGACATGTGTTTATCAGACCTTGACAATAACTACCCAAAAATCGATATTAAAAGAGAGAGAAATCAGAAG 1176
Query 1051 TCACTGTTTAAGGACCAGAAATTTGAAGCCATGTTGGTTCAGCAAAATAGGTCAGACAAGAGCTCTTGCGATGA 1124
|||.||.||||.||.||.|..|||||.|.||||||||.||||||.|||.|||||||||||||||||||.||||.
Sbjct 1177 TCATTGGTTAAAGATCAAACGTTTGAGGTCATGTTGGCTCAGCACAATGGGTCAGACAAGAGCTCTTGTGATGC 1250
Query 1125 ATGCAAAGAGAAGAAACAACAGATCGATACTGTGTTTGGGGAGAAAAGTGTAATTAAGCTGTCATCCATATTCA 1198
.||||.|||||||||.|.||||.|..|.||||...|.|||||.||||||||||||...||.|||||..||||.|
Sbjct 1251 TTGCAGAGAGAAGAAGCTACAGGTTAACACTGCACTCGGGGAAAAAAGTGTAATTGCTCTCTCATCTCTATTTA 1324
Query 1199 CCAAAGACTTAGTAGAGAAACACAACCTCCCTTGGTCTCTGGGAGGAAAAACCCAGATTGAACCCGAAAACAAA 1272
|||||||||||.|.||.|||||.|| ..|||||||||||||.||.||||.|||||.||||||.|||||||||
Sbjct 1325 CCAAAGACTTACTGGACAAACAAAA---GTCTTGGTCTCTGGGTGGGAAAATCCAGACTGAACCGGAAAACAAA 1395
Query 1273 ATTACATTGTGCAAGATCCACACAAAATCACCAAAATGTCATGGCACTGGGG-TTCAGAAC-GAAGGAAAACAA 1344
.||||..|.||||||.||||..||||.|||||||||||..|||| |.||||| ||| .||| ||||..||.||.
Sbjct 1396 GTTACCCTATGCAAGGTCCATGCAAAGTCACCAAAATGCGATGG-AGTGGGGCTTC-CAACGGAAGAGAAGCAG 1467
Query 1345 CCCTCAGAAACACC---CACTTTATCTGATGAGAAGCAGTGGCATGATGTCAGTGTTTACCTGGGCCTGACCAA 1415
|.|||.|||||..| |.|..|.|||||.|||||||||||||||||..|||..||.|||||||||||..|||.
Sbjct 1468 CTCTCGGAAACCTCCGTCTCGCTGTCTGACGAGAAGCAGTGGCATGACATCAACGTCTACCTGGGCCTTTCCAG 1541
Query 1416 CTGTCCAAGTTCAAAACATCCAGAAAAGCTGGATGTAGAATGTCAAGATCAGATGGAAAGG----TCCGAAATC 1485
|| |.||||||||.|||||.|.||||||.|..||..|.||.||.| |.|.||| ||.||..||
Sbjct 1542 CT------GCTCAAAACAGCCAGACAGGCTGGACGGGGATGGCCACGACC----GCACAGGAACATCTGAGGTC 1605
Query 1486 TCATGCTGCCAGAA----AAATGAAGCCTGTCTGGGCGAAAGTGGCATGTGTGACTCCAAGTGCTGCCACCCGA 1555
||.|||||| | |||||.||.||||.|.||.||.|.||.|.|||..||.|||||||||||||||||.|
Sbjct 1606 TCCTGCTGC----ACCCCAAATGTAGTCTGTATAGGTGACAATGACCTGTCCGAGTCCAAGTGCTGCCACCCAA 1675
Query 1556 GTAACTTCATAATTGAAGCCCCAGGCCACATGTCTGACGTGGAGTGGATGAGTATTTTCAAGCCTTCCAAAATG 1629
|||||.||||.||.|||||||||||.||.|||.||||....||||||||||.|||||||||||||||||.|...
Sbjct 1676 GTAACATCATCATCGAAGCCCCAGGACATATGACTGATACAGAGTGGATGAATATTTTCAAGCCTTCCAGAGCA 1749
Query 1630 CAGAGAATTGTCCGCCTCAAATCTGGGTGCACCTGTTCAGAAAGCATCTGT-GGCACA---CAACATGACTCCC 1699
||.||.|||||.||||.||||.|...||||||.||||||..||| ||| .||.|| .||.||.|.|||.
Sbjct 1750 CAAAGGATTGTTCGCCACAAAACCATGTGCACTTGTTCAAGAAG----TGTCAGCGCAATGAAATATAATTCCT 1819
Query 1700 CGGCAAGTGAGCTAATTGCCATCCAAGATTCCCACTCTTTGGGTTCTTCAAAATCTGCCTTG--AGAGAAGATG 1771
|.|||||||||||.||||.|||.||...||||||.|.|.|||||||.|.|||.||||| || ||||||||
Sbjct 1820 CAGCAAGTGAGCTCATTGGCATGCAGCCTTCCCAGTGTGTGGGTTCCTTAAAGTCTGC--TGAAAGAGAAGA-- 1889
Query 1772 AGACGGAGTCCTCTTCCAATAAAAAGAACTCACCTACGAGTTTGTTAATCTACAAAGATGCACCAGCATTCAAT 1845
||||| ||||
Sbjct 1890 ----GGAGT------------------------------------------------------CAGC------- 1898
Query 1846 GAAAAGGCTTCAATTGTGTTACCCTCCCAGGATGATTTCTCGCCCACGAGCAAGCTCCAGCGTTTGCTGGCGGA 1919
.|||| ||.|||.|.||
Sbjct 1899 ----------------------------------------GGCCC------------------TTCCTGACAGA 1914
Query 1920 ATCTCGTCAGATGGTGACGGACCTGGAGCTGAGCACACTGCTGCCCATCAGCC-ATGAGAATCTCACTGGCAGT 1992
| |.||| |||||| ||||
Sbjct 1915 A-----------------GAACC------------------------TCAGCCAATGA---------------- 1931
Query 1993 GCCACAAATAAGTCAGAGGTCCCAGAAGAGTCAGCTCAAAAAAATACCTTTGTCAGTTAT 2052
|||.||.|.|||.|||.||||||||.|||.|.||||||..|||.||||||||.||
Sbjct 1932 -----AAAGAAATTAGAAGTCTCAGAAGAGCCAGATGAAAAAACCACCCTTGTCAGTCAT 1986