Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14312
- Subject:
- NR_149160.2
- Aligned Length:
- 4671
- Identities:
- 611
- Gaps:
- 4059
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGACCTGCAGAGTGAAGAAAGCTGGTAATAGATGTCTGACAAACTAAAGAAAGACTTGTGTTACCACAATTCAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACAGCCCGGAATATCAAGATTCATCTTTTTCACTAATTGTGGCATTCACAGATGCAAAGTATTGTTCCTGGGTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TGTCTGTGAGAGTATTGCCAAAGGAGAGCAGTGAACTGGGAAAAGCAGACCCACCTCAATGTGGGTGGGCAACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCCAATCGGCTGCCAGCTAGAATAAACCAGGCAGGAGAAGATGGAAGAGCCGACTTGCTGAATCTTCCAGCCTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CATCTTTCTCGTGTGCTGGATGCTTCCTGCCCTCAAACATCAGACTCCAGGTTCTTCGTCTTTTGGACTCTCGG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 ATTTACATCAGTGGTTTACCAGGTGCTCTCAGGCCTTCAGCCACACACTGAAGGCTGAATTGTCGGCTTCCCGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTTTTGAGATTTTGAAACTTGGACTGAGCTACTGCTGGCTTCCTTGCTTCTCAACTTACAGATGGGACTTCACC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 TATAGATCATGATCAGAACATAATACCTGAAAATTTGCCAGCACCAACAGACAAATGTAAACTAAAATATCAGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 AATGTAAAACTGAAATTAAAGAGGGCTATAAGCAGTATAGTCAGAGAAATGCAGAAAATACAAAATCAAATGTT 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACACATAAACAGTCTCCAAGAAACAAGATAGATGAAAAGTGTGTGCAAGATGAAGAAGCCAACACAGATGACCT 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TACGACTCTGGATAGGAAAGCCATCTTACAGCAAGGTTATGCAGACAACTCTTGCGATAAACAACAGAGGGCAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 GAAAATTGGATGCAGAAATTGTGGCTGCAGAGAAGAAGAAACAGATTGTTGCAGAGCAAGTGATGATAGACCAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 TTATCTAGGGCTGTCATCAGTGATCCAGAGCAAAATTTAGCCATTGAGCAAAAAGAAAGTGATCATATCCTTCC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGATTCAAAGATGACACCTCTTCGATTTAGAAAAAGAACACTACATGAAACAAAGGTGCAACCTTGACATTTTT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 GAGTTCTGATCATCTCAGCCTTCCAGAAAGCATCAAAGAAAACACATTACTTAAACTCCGAATCACAAATATTG 1110
Query 1 -----------------------------------ATGGAACAGGAGGATAATATAATCATTCAAGAAACCAAT 39
|||||||||||||||.|||||||||||||||||||||||
Sbjct 1111 ATCAAATAGCTTTGGATTCTCTCAAAACTGCTTCTATGGAACAGGAGGATGATATAATCATTCAAGAAACCAAT 1184
Query 40 GATAGGCTGGTCTTCAAAGCAATTCAAGATGTGCTAAAAGAAAAACTACATAAAAGAGGTGTTCGTATTTTGAC 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 GATAGGCTGGTCTTCAAAGCAATTCAAGATGTGCTAAAAGAAAAACTACATAAAAGAGGTGTTCGTATTTTGAC 1258
Query 114 TGGATTGGGAAAATATTTTCAACAGTTGGACAAGGAAGGAAATGGACTTTTAGATAAGGCAGATTTTAAGCAAG 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TGGATTGGGAAAATATTTTCAACAGTTGGACAAGGAAGGAAATGGACTTTTAGATAAGGCAGATTTTAAGCAAG 1332
Query 188 CTCTAAAAGTGTTTCACTTAGAAGTGTCTGAAAAGGATTTTGAGTCTGCATGGCTAATTCTGAATGACAATGGC 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 CTCTAAAAGTGTTTCACTTAGAAGTGTCTGAAAAGGATTTTGAGTCTGCATGGCTAATTCTGAATGACAATGGC 1406
Query 262 AATGGCAAGGTTGATTATGGAGAATTCAAACGTGGTATTATTGGTGAAATGAATGAATACAGGAAATCATATGT 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 AATGGCAAGGTTGATTATGGAGAATTCAAACGTGGTATTATTGGTGAAATGAATGAATACAGGAAATCATATGT 1480
Query 336 TCGAAAGGCCTTTATGAAACTGGATTTCAACAAAAGTGGCAGTGTGCCTATTATAAACATAAGAAAATGTTACT 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TCGAAAGGCCTTTATGAAACTGGATTTCAACAAAAGTGGCAGTGTGCCTATTATAAACATAAGAAAATGTTACT 1554
Query 410 GTGCAAAGAAGCATTCTCAAGTAATTTCAGGCCATTCAACAGAGGAAGAAATCAAATCATCCTTTCTAGAAACA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 GTGCAAAGAAGCATTCTCAAGTAATTTCAGGCCATTCAACAGAGGAAGAAATCAAATCATCCTTTCTAGAAACA 1628
Query 484 TTAAAAGTTGCCTGCAGCAAGTCTGATGAAGTGTCATATGGTGAATTTGAAGATTACTATGAAGGTTTAAGTAT 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 TTAAAAGTTGCCTGCAGCAAGTCTGATGAAGTGTCATATGGTGAATTTGAAGATTACTATGAAGGTTTAAGTAT 1702
Query 558 AGGAATAGTAGATGATGAAGACTTTGTTAACATCTTACGTACTCCATGGGGGATT------------------- 612
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AGGAATAGTAGATGATGAAGACTTTGTTAACATCTTACGTACTCCATGGGGGATTTAGTCTTTAATAATACATA 1776
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1777 TGTCATCAACACTAAGCATTTTATTGGAGAGATGATATCAATGTAAAGGATGATCAAACACTGGAATATATTTT 1850
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1851 CCTAGGACTTCCTTTATTCTGGTTTCTTGTTTGTTTGTTTTGTTTTGTTTTGTTTTCTCAAAAATGTTGAATTT 1924
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1925 GGAAAGAGAACTATCCAGAAAGATAGATGTAGGGGTGTGTTAGTGTTTGTGCATGTGTATGCCTGTTCACATGT 1998
Query 613 -------------------------------------------------------------------------- 612
Sbjct 1999 CCTTACATTTGTAAAGATATCTTTTTGGTTTATTACTTATCTTGCGTATATTTTAGAGGTCATTTTTTATTAAC 2072
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2073 TTCAGTAGGAAAGTTACATCTGCATCAAACAATATGGCAACATCTATTTATTAACCAAGTTTCCTGTCCTTTCA 2146
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2147 CATTGTTTTTTGCTACCTCTTCCTCAGAATATATTTGCCACCATGGTCAATTTGATAAATTAGAATTGGGCCCA 2220
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2221 AAGCCAGTGAGATAATTCAATGTGTTTTTAACACATGAAAATATTAAAGGATATGCAAGAGAAATTTTTCAAGC 2294
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2295 AGTGTGATTATAGATGTTTTCTGTATATAGAATATTTCAAATGATGGAGGTTTACCCCATGATGCTCATTTAAA 2368
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2369 TACTGACTTGTCTTTTAAATCTGTCTTCTAAATTATGTACTGTTGTTGGTTAAATAGAGCACAATGTAGTTATT 2442
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2443 CTAATGCCCAGTTGTATTTGTTCTTTTATTCTGCTTTTTAACTGTAATCCTTTTTACCAGCATACGATTGTTAT 2516
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2517 TGAGCAATATGAAAGGGAAATGTTCTTTATTAAAATCAATACATTATCTTATTAAACAAAGATCCTAAAAGTAT 2590
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2591 ATTGTTGCATATATGAATCCAAGGAATAGTTCAGTAATTATTGCCTAAAATGTGAAAGCATATTTTGTATCCTA 2664
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2665 AAATGAATGTATGATATTCTAAACATCTGTTTTAGTATAACAAACAATTGAAACATTTCCTTCTAAATATATGT 2738
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2739 TATTTAATAGTTACATGTATTATAATCATTCTTTCTAAATTCTTTGCTAGTCATTTCTTCCTGGGAATACAGAG 2812
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2813 AAAAGAGACAACTTTATGAGTTGTTTTCAACTTCATAATTTTAAATTTTCTATGTTAATATAACATAAATTAGA 2886
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2887 AAAAATAAGTGATTCAAAATGAAAATATTTACTTTGTAGAATATGACTTTAGACATATCACTGTATCCATCTAT 2960
Query 613 -------------------------------------------------------------------------- 612
Sbjct 2961 ACTTGGCAGCAACATGAGAAGTGTGATACATGTGAACCCAACAAATTCAAAGTTGCACTTTTCAAGATGTGAGA 3034
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3035 AGGTACTAAAACTTAATACTAAAACATGAGAGGGAAAATATGTGTAAACCTCTAGTGCTATTTTCACTGGCTAA 3108
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3109 ATTCTTTATTTCTTGATTTTTTTAAAAATTAGGTTATTAAAATTAAAACAATATGCTAGAAGACATTTTGGCAG 3182
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3183 AAATAAGTCTATAACACTATTTTTGTCACATATCTTTTTCTTGGAAAAATTTATCCAACTATAGACATCTTAAA 3256
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3257 CCCTACAAATTGTTCTTGTTAAAAATGACTAATACTGGGGGTGCTCAATATGCATATAGTGTTTTTCATTGATA 3330
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3331 ATTTTTATTTAGTTCTTAAGAAACCTGTTCTTAATGTTGGCATGTCACATTTTTCTGTTACTATAATCAGAAAA 3404
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3405 TGTATAGTCTGTTATACTGTAAAAAAAAAAAAAAAGGGAAGCTACTTTTGGAATGTAACGTGTTAACATGACAG 3478
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3479 CATACTCTTAGTATTAATCTTAATCTTCCTAACATAAGCATTCACATGTGGTTATTTGTAGGAAATAGCTCTAT 3552
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3553 TTATGAGATTTTTTTTGGTGTATTTTGTTAGAATTGGTGACACAGTAAATCATTCTGCTTTTGGATTTGCCTGA 3626
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3627 CTGCCTGCATTCTTCTTTGATTTTGGTATAGTAAAATCTGTTATTTAGTGTTAAACTTAATAAAAGAGCATTTA 3700
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3701 AGAGAAGTGACATTTCAAACATCCACAACACAACTGACTTTTGAAATCCTATGCTTAATAGTCTTTGTAATTCT 3774
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3775 AAAAGACCTTTTGAAAATGTTAAAATATTAAATTATATGTTGTAATGCTGTTACATGAATTTTATAGTTATGTA 3848
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3849 TATTTTATAGATCTCTATGTCTTTGTAAGTTACTTGCTTGTATGCTATATAATTGCTTTCTCAGTTAACCATAC 3922
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3923 TGTTTATGGAATTGTATATACTGATTTTTCTGTTTTTATATTTTAAAAATAAAAGTTGAGAATTTTAAGGAAAA 3996
Query 613 -------------------------------------------------------------------------- 612
Sbjct 3997 ACATTTTATTAAAAAGACAAGGTATATTATATAGGAATTTTAAGCTAACTTTTAATGGAAAGGACATACATATT 4070
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4071 TGCATGATGGAGCAATCACATTATAGTTAAACATGTATGTCCCTGTTTTAAATTTTATAGTATATAAATATATG 4144
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4145 TGCTAATGAACCAGCGACTCTGCATAGAGGCAGTCACTTAGAGTAATTAATAATCTTGATACAGCTGTAGATCA 4218
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4219 TATCTTATTTTACATATTACTTTTGACTTCCAGTTTAAGTTGTTTGTTATCAAGTATTTCAGGAGAGAATTGTG 4292
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4293 TACATTAGGCTATGTTTACTGCAGATTATGTAACATGCTTTTATGAGATTATAGTTTGTAGTGCTTGCAAATAT 4366
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4367 AAAACATGTACCCTGATAAACTATAATCACTACTAGGTTGACCAGCAAGGACAAACATGAAAATGCTTAAAAAA 4440
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4441 AAGAAAGCGCTTAAAACAAAGAAATAGAAGGTAATGGGCATATATAAAATAAGCCAAGCAAGAGAAGAGCAAAG 4514
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4515 ACAATCTGCAGGGTGGACATGGATGTATTCGTTTCTGATCATGAGAAGAGGCTCTTGTCATACATATCGTTCCA 4588
Query 613 -------------------------------------------------------------------------- 612
Sbjct 4589 TTTTTATTTTAAAGTTCTATAAACTTCTGAGGTAAACTGATTTCTTGGATGTACTTAATAAAGAATAAATGTTT 4662
Query 613 --------- 612
Sbjct 4663 CATATTGGA 4671
