Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14326
- Subject:
- NR_144345.2
- Aligned Length:
- 5236
- Identities:
- 855
- Gaps:
- 4375
Alignment
Query 1 ------------------------------------------ATGCGGGTGAAAGATCCAACTAAAGCTTTACC 32
||||||||||||||||||||||||||||||||
Sbjct 1 AGGTTGTAGACGCTGCGGCCCGGCCCGGCGGGTAAATAACAGATGCGGGTGAAAGATCCAACTAAAGCTTTACC 74
Query 33 TGAGAAAGCCAAAAGAAGTAAAAGGCCTACTGTACCTCATGATGAAGACTCTTCAGATGATATTGTTGTAGGTT 106
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||
Sbjct 75 TGAGAAAGCCAAAAGAAGTAAAAGGCCTACTGTACCTCATGATGAAGACTCTTCAGATGATATTGCTGTAGGTT 148
Query 107 TAACTTGCCAACATGTAAGTCATGCTATCAGCGTGAATCATGTACAGAGAGCAATAGCTGAGAATCTGTGGTCA 180
||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 149 TAACTTGCCAACATGTAAGTCATGCTATCAGCGTGAATCATGTAAAGAGAGCAATAGCTGAGAATCTGTGGTCA 222
Query 181 GTTTGCTCAGAATGTTTAGAAGAAAGAAGATTCTATGATGGGCAGCTAGTACTTACTTCTGATATTTGGTTGTG 254
||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GTTTGCTCAGAATGTTTAAAAGAAAGAAGATTCTATGATGGGCAGCTAGTACTTACTTCTGATATTTGGTTGTG 296
Query 255 CCTCAAGTGTGGCTTCCAGGGATGTGGTAAAAACTCAGAAAGCCAACATTCATTGAAGCACTTTAAGAGTTCCA 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCTCAAGTGTGGCTTCCAGGGATGTGGTAAAAACTCAGAAAGCCAACATTCATTGAAGCACTTTAAGAGTTCCA 370
Query 329 GAACAGAGCCCCATTGTATTATAATTAATCTGAGCACATGGATTATATGGTGTTATGAATGTGATGAAAAATTA 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GAACAGAGCCCCATTGTATTATAATTAATCTGAGCACATGGATTATATGGTGTTATGAATGTGATGAAAAATTA 444
Query 403 TCAACGCATTGTAATAAGAAGGTTTTGGCTCAGATAGTTGATTTTCTCCAGAAACATGCTTCTAAAACACAAAC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TCAACGCATTGTAATAAGAAGGTTTTGGCTCAGATAGTTGATTTTCTCCAGAAACATGCTTCTAAAACACAAAC 518
Query 477 AAGTGCATTTTCTAGAATCATGAAACTTTGTGAAGAAAAATGTGAAACAGATGAAATACAGAAGGGAGGAAAAT 550
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AAGTGCATTTTCTAGAATCATGAAACTTTGTGAAGAAAAATGTGAAACAGATGAAATACAGAAGGGAGGAAAAT 592
Query 551 GCAGAAATTTATCTGTAAGAGGAATTACAAATTTAGGAAATACTTGCTTTTTTAATGCAGTCATGCAGAACTTG 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCAGAAATTTATCTGTAAGAGGAATTACAAATTTAGGAAATACTTGCTTTTTTAATGCAGTCATGCAGAACTTG 666
Query 625 GCACAGACTTATACTCTTACTGATCTGATGAATGAGATCAAAGAAAGTAGTACAAAACTCAAGATTTTTCCTTC 698
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCACAGACTTATACTCTTACTGATCTGATGAATGAGATCAAAGAAAGTAGTACAAAACTCAAGATTTTTCCTTC 740
Query 699 CTCAGACTCTCAGCTGGACCCATTGGTGGTGGAACTTTCAAGGCCTGGACCACTGACCTCAGCCTTGTTCCTGT 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTCAGACTCTCAGCTGGACCCATTGGTGGTGGAACTTTCAAGGCCTGGACCACTGACCTCAGCCTTGTTCCTGT 814
Query 773 TTCTTCACAGCATGAAGGAGACTGAAAAAGGACCACTTTCTCCTAAAGTTCTTTTTAATCAGCTTTGTCAGAAG 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTCTTCACAGCATGAAGGAGACTGAAAAAGGACCACTTTCTCCTAAAGTTCTTTTTAATCAGCTTTGTCAGAAG 888
Query 847 CGGGTGCATCTACATTTAATA----------------------------------------------------- 867
|||.||..|||||| |
Sbjct 889 -----GCACCTCGATTTAA-AGATTTCCAGCAACAGGACAGTCAGGAGCTTCTTCATTATCTTCTGGATGCAGT 956
Query 868 -------------------------------------------------------------------------- 867
Sbjct 957 GAGGACAGAAGAAACAAAGCGAATACAAGCTAGCATTCTAAAAGCATTTAACAACCCAACTACTAAAACTGCTG 1030
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1031 ATGATGAAACTAGAAAAAAAGTCAAAGCATATGGAAAAGAAGGTGTGAAAATGAACTTCATAGATCGGATCTTT 1104
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1105 ATTGGTGAATTAACTAGCACGGTCATGTGTGAAGAATGTGCAAATATCTCCACGGTGAAAGATCCATTCATTGA 1178
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1179 TATTTCACTTCCTATAATAGAAGAAAGGGTTTCAAAACCTTTACTTTGGGGAAGAATGAATAAATATAGAAGTT 1252
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1253 TACGGGAGACAGATCATGATCGATACAGTGGCAATGTTACTATAGAAAATATTCATCAACCTAGAGCTGCCAAG 1326
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1327 AAGCATTCTTCATCTAAAGATAAGAAAAGAAAGTAGAAGGAGTTTATACTAATGCCAGGAAGCAATTGCTCATT 1400
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1401 TCTGCTGTTCCAGCTGTCCTAATTCTCCACCTGAAAAGATTTCATCAGGCTGGCTTGAGTCTTCGTAAAGTAAA 1474
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1475 CAGACATGTAGATTTTCCACTTATGCTCGATTTAGCACCATTCTGCTCTGCTACTTGTAAGAATGCAAGTGTGG 1548
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1549 GAGATAAAGTTCTCTACGGTCTCTATGGCATAGTGGAACATAGTGGCTCGATGAGAGAAGGCCACTACACTGCT 1622
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1623 TATGTGAAAGTGAGAACACCCTCCAGGAAATTATCGGAACATAACACTAAAAAGAAAAATGTGCCTGGTTTGAA 1696
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1697 AGCGGCTGATAATGAATCAGCAGGCCAGTGGGTCCATGTTAGTGACACTTACTTACAGGTGGTTCCAGAATCAA 1770
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1771 GAGCACTTAGTGCACAAGCCTACCTTCTTTTCTATGAAAGAGTATTATAACTATTAATGGTAATGATTATTTAG 1844
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1845 GTCATTTGTTTTTGAATGCCACAGTGATAACTATAATATATAATGTGCCTTTCTAGTCTTCCCTCTTCTGTAGG 1918
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1919 AATAGCATGTTCCTCAAATGGTCCTGAACTTTTTCACCATTTTGGTGAACCCTTTTAAAGTAAATTTACTCAAT 1992
Query 868 -------------------------------------------------------------------------- 867
Sbjct 1993 GCTTTAAAATTCATAGTCTTAAAATAAATGTGAATTTTGTTTCCAGGTATTTATTCTGGGGTACAAAAACTTCC 2066
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2067 CAGAATTTACAGTAGGAAAGGAAACCCCTTTATGATGTGGCTTATTATTACAAGCATTCAGAAATGATGCTGGC 2140
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2141 TAAGTCAAATCATTCCTTGAGACAGTGATTCCTAAATGTAATGCCACCTTCCTGAACTCTCACATATTCTATAT 2214
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2215 CATGGTTATTTTAAAAAATATATTTTTAGCCTTTTGTAACCTTAGTCTTGTTTTGAGCAATCATATTCCGTGTT 2288
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2289 TTATGTGCTTTTATATTTTTATAATAAATATTAAAGTAAAACTATTAAAAATTGTTTATCCACGTACCACTTAA 2362
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2363 CTTAAAATCATCTCAGGGCCATCTAGTGGTATATATGTGTACTACCATTTAGGAAACTGCTATAACACATAATT 2436
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2437 TCATGAAGTAACACCTAATACGGTGTAGTTCCCTGGTCATATTTTATACAATTCAACCATATAAAAGGGTGTCA 2510
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2511 CTGTAATTTCAGTAGTGTGGGTTTACAAATAATCTGCTGGTTAGCTTATTACCTTGAGGTTTTGAAAAACTAGA 2584
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2585 ATTATATTGAGGCATTTCATAAACATATCTCTTGCACCCTCTTCATGGTGGAGTTAAGGATAACTTGCAGGTGG 2658
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2659 TTGGCCAAGGCCCAATATAGATGATTATAACATTTAGAATTGGCAATTAGAAGTTGATAATCCATATAGGACCA 2732
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2733 TAGGATAGCTTTGAAATATAAATTACCAAATTATATTTGTAAATGATAGAGAATTATATTCTTAACAGAAAAAT 2806
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2807 ATATACTTTTTCTACTTCTTGTAAATACTAAACACAGTTTTGGGGTTTTGAAATCACTTTGTCTTCAGCAAGCA 2880
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2881 TCATTAATAAGTTCAGGTGAATTTAGCTTTTAATGGGGCATTAAGCTGGCATTTTTGATTTTCTTTTTAAATAA 2954
Query 868 -------------------------------------------------------------------------- 867
Sbjct 2955 TAGCAAAAATATCATTTTTCCCCTCTAGAATACAAATTATTGAGCTGTCAAAACTTGGCATGAAGAATATACTA 3028
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3029 TTACTTAGGCTTAAATATCAAAAGATAATGGCTACTTCAGTGTCATATTGTTGAAATAGAAACAAAACTGCATG 3102
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3103 GTTCAAGCATCCTAATCATTAGTGCCAATGAATGATAGTGCAGGCAAGTGCCAGGTAAATGCCTAGTCCCACTT 3176
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3177 CATTCTCCTCCTGGGAAGAAAGGATAAGAATAGTGGCTGCAGATAAGGTATGGAAATATTTAATCAAGACTGTC 3250
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3251 TTAAACACATAAGCATATATAATGTTATCAAGGTTACCAGTGCTGCCTTTTGATATATGGATGAACATAACTGT 3324
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3325 AATTAAAGACGGTAATAGTATACAAAATGCAGAGCTTAAAAATGTCATTGCATAAATTCTATTTTTAAGATGTT 3398
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3399 GAAATGTTAGTAGTGTTTTTCTTGATTTTTAACAGTGAAATAATCAAGAAATATATCTTTAAGTTAATCTGCAA 3472
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3473 AGTCAGGCTGTGTTCTGTAAAAGGTATTTCACAGCATTTTCTGTTTAACTGTAATCTGTTATCATGGAGATCTC 3546
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3547 AGTACCAGAGCAGTGAATTTTTTGAAAAATATTGACTGTCTTTATTCAAGTCAGCCATCTTGGTAAGAGCAGTT 3620
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3621 TTCATCCCCCCACTGCCCAAATGTAAATATAGATCACCTAATTTTTCTTACAGAAAGATACTGTTAAGAGGCAT 3694
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3695 GCACTTTTCATCGGATGGTCACTTGTTTCTTGTTTCAAAGACAAATATTTGGATAGATACCCATACTTGCTATG 3768
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3769 AGTCAGTCACAGTGCTGACACTATTTTAACATCATTTAAAATGGAAAGATCTACATAGATTTTTGACATTATTC 3842
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3843 CAGAAGTAACATGCAAGTAAGATATTTTTATTGTCATTTTCTTCATGTTAAAGGAGCTACTTATGAAACCTATT 3916
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3917 TTTTTATGGCCTAGAGTTTATGAGTGCTTTTTCCTTGTCTTCTGAAAATGGAATAAATTGGATTTTTGATACTT 3990
Query 868 -------------------------------------------------------------------------- 867
Sbjct 3991 AAGAATTTCCTAAAGATAGCTTTTGTAACAGAGAAAGCATGTTAAATTACACATGGGTCTACCTTAAAATTTTT 4064
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4065 GTTATTATTTCCAAAGCACATTTGCAGGGATAGTAAATGTATATAGTAGCAAGTCTACTATAATAACAGTAGTT 4138
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4139 TCTGGATCACCTCAGGAAACAGTATAAATAAATAATAATGTTTACTTATCATCAACATAACTACCATAGTGTTT 4212
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4213 GAATGAATTAAAGTTTCATTAGCTTTATTTAGAAACTGGTTTACCCCAGCTTCCCGTTTTTTTCCAAATATAAA 4286
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4287 ATGATAAAATATTGATTATGTGCCAATATTGTCATTTAATGTTCTTAAAACTTGTGAAGACCACCTTTTTAGGT 4360
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4361 AGCTGAGAAGAGTGATAGTTGGTATCAATTTGTTAGCCAGGCATGGTGGCTCATGCTGTTGGGAGGCTGAGTGG 4434
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4435 GGAAGATGCTTGAGCCCAGGAGGTCAAGGTGCAGTGAACCATGATCACACCACTGCATTCCTGCAGAGTGACGG 4508
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4509 AGTGAGACCCTGTCTCAAAAATAAATAAAAAGAAGACAGTTGGTATCAATTCAAAGAATAGTTGATGCCTGTTC 4582
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4583 TCTTATTTTAAATGTACCAACAGAGCTATTTTACTGTATTTAATAGTTCTTAGCTTCCATGTGTGATGATTTTA 4656
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4657 ATCAGTGATTTTATGCAATAGCTGAAGAAAATTTTCTGAAGATTAAGCTGTGAAATGTATCAACCCTCATCTAA 4730
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4731 TTTTTGTAGTACAAAATGACATCCTGATTCCTTTTAAAAATTCACGTTTGTAATTTATTTTTCTGCATGTATTG 4804
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4805 ATCAAATAAGCCTAAACCAAATATGTGCAATAAAATTGAGCCTTTAGATAGTATCTAGTGCATTGTTAAAAAAG 4878
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4879 ATTATTTCTAGATATTTATGATGTTTTTGTTTACGTAGAAATCATGAATTCAAATGTTTAAAAGATGACCATAT 4952
Query 868 -------------------------------------------------------------------------- 867
Sbjct 4953 TTTCAATTTTGAGTAATACATATTATTCCTACTGTTTTTTTTCTTTTGCCATGTTTCTAGAAAACAGCTGTGTA 5026
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5027 ACTTATTGAGCGTTATTTTGGTGTTACTGTATAAAACATGCATAATAAATATTCTTATTTATCTCATGTTACAA 5100
Query 868 -------------------------------------------------------------------------- 867
Sbjct 5101 GATTGGTCCTGGAATTTTCACAGTTTACGTTATTGACAGAATGTTTTATCAACAATGCATTTGCTTATGTCTTA 5174
Query 868 -------------------------------------------------------- 867
Sbjct 5175 GTCCACTCAGGCTGCTATAATAAAATACCATCAACTATGTGGTGTATTAACAAAAA 5230
