Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14355
Subject:
XR_002956407.1
Aligned Length:
4926
Identities:
703
Gaps:
4195

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATAAAAACCGGGTGCCGGCAGGCGCCAGTCGCAGGTGTGCTGCTGAGGCGTGAGAATGGCGTCCCGCGGCCGGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTCCGGAGCATGGCGGACCCCCAGAGCTGTTTTATGACGAGACAGAAGCCCGGAAATACGTTCGCAACTCACGG  148

Query    1  ATGATTGATATCCAGACCAGGATGGCTGGGCGAGCATTGGAGCTTCTTTATCTGCCAGAGAATAAGCCCTGTTA  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  ATGATTGATATCCAGACCAGGATGGCTGGGCGAGCATTGGAGCTTCTTTATCTGCCAGAGAATAAGCCCTGTTA  222

Query   75  CCTGCTGGATATTGGCTGTGGCACTGGGCTGAGTGGAAGTTATCTGTCAGATGAAGGGCACTATTGGGTGGGCC  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  CCTGCTGGATATTGGCTGTGGCACTGGGCTGAGTGGAAGTTATCTGTCAGATGAAGGGCACTATTGGGTGGGCC  296

Query  149  TGGATATCAGCCCTGCCATGCTGGATGAGGCTGTGGACCGAGAGATAGAGGGAGACCTGCTGCTGGGGGATATG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  TGGATATCAGCCCTGCCATGCTGGATGAGGCTGTGGACCGAGAGATAGAGGGAGACCTGCTGCTGGGGGATATG  370

Query  223  GGCCAGGGCATCCCATTCAAGCCAGGCACATTTGATGGTTGCATCAGCATTTCTGCTGTGCAGTGGCTCTGTAA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGCCAGGGCATCCCATTCAAGCCAGGCACATTTGATGGTTGCATCAGCATTTCTGCTGTGCAGTGGCTCTGTAA  444

Query  297  TGCTAACAAGAAGTCTGAAAACCCTGCCAAGCGCCTGTACTGCTTTTTTGCTTCTCTTTTTTCTGTTCTCGTCC  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  TGCTAACAAGAAGTCTGAAAACCCTGCCAAGCGCCTGTACTGCTTTTTTGCTTCTCTTTTTTCTGTTCTCGTCC  518

Query  371  GGGGATCCCGAGCTGTCCTGCAGCTGTACCCTGAGAACTCAGAGCAGTTGGAGCTGATCACAACCCAGGCCACA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GGGGATCCCGAGCTGTCCTGCAGCTGTACCCTGAGAACTCAGAGCAGTTGGAGCTGATCACAACCCAGGCCACA  592

Query  445  AAGGCAGGCTTCTCCGGTGGCATGGTGGTAGACTACCCTAACAGTGCCAAAGCAAAGAAATTCTACCTCTGCTT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  AAGGCAGGCTTCTCCGGTGGCATGGTGGTAGACTACCCTAACAGTGCCAAAGCAAAGAAATTCTACCTCTGCTT  666

Query  519  GTTTTCTGGGCCTTCGACCTTTATACCAG---------------------------------------------  547
            |||||||||||||||||||||||||||||                                             
Sbjct  667  GTTTTCTGGGCCTTCGACCTTTATACCAGAGGTGAGGGACACTGGGTTTGCAGGCAGGCCTGTGTCTTTTGACT  740

Query  548  --------------------------------------------------------------------------  547
                                                                                      
Sbjct  741  TCCAGGCAGTGGGGCTCAGCCTGCAGAGCCTGCTGGGAGAACACTGGTGGGGAAGCAGGGCCCAGCCCCAGAGT  814

Query  548  --------------------------------------------------------------------------  547
                                                                                      
Sbjct  815  GCAGACCCTGGAGTGCTCACATCCTCTGGAATCTGGAGGCAGAGACCTCTGCTCTGCAGGTCCCAGAAAGGCGT  888

Query  548  --------------------------------------------------------------------------  547
                                                                                      
Sbjct  889  GTCAGTTCCTTCTCGTGGGACTGGACCTCGTCCCTGTCGGAAGGGTCAGGCCTGGGTGCCTGGGCTTCTGGAGT  962

Query  548  -------------------------------------------------------AGGGGCTGAGTGAAAATCA  566
                                                                   |||||||||||||||||||
Sbjct  963  GGGGCAGATGGTTTGAGAACTCTCCAGGGTGACCTGAGTGCACTTTGGTTCCTGCAGGGGCTGAGTGAAAATCA  1036

Query  567  GGATGAAGTTGAACCCAGGGAGTCTGTGTTCACCAATGAGAGGT--------TCCCATTAAGGATGTC------  626
            ||||||||||||||||||||||||||||||||||||||||||||        |.|  |.|||..||.|      
Sbjct 1037  GGATGAAGTTGAACCCAGGGAGTCTGTGTTCACCAATGAGAGGTAAAGCAACTGC--TGAAGCCTGCCCCGGCT  1108

Query  627  GAGGCGGGG--------AATGGTGAGGAAGAGTCGGGCATGG---------GTGC-------------------  664
            |..||||||        |.|.||.|          |.|||||         .|||                   
Sbjct 1109  GCAGCGGGGGCTGCCACATTTGTTA----------GACATGGACTTTCTCTCTGCCCTCACCCAAGCCTCTCAG  1172

Query  665  ------TGGAGAAG-------AAGGAG-CGGCA-------CAGGCGCCA-------------------GGGC-A  697
                  ||.||.||       ||||.| |||.|       ||||..|||                   |||| |
Sbjct 1173  GTCACATGCAGCAGGGACACCAAGGTGACGGTAGAAACATCAGGTCCCATTTGGACTGTGCCTGTTTGGGGCTA  1246

Query  698  G--------------GGAAGT-------CAGACCTGACACCCAGTACACC--------GGCCGCAAGCGCAAGC  742
            |              |||.||       |||.|.|| ||.||.|.||.||        |.||.||    ||.||
Sbjct 1247  GGGGTTTGGGGTCCTGGATGTCTGGGTGCAGCCATG-CAGCCTGGACTCCCTTTGTGAGCCCACA----CATGC  1315

Query  743  CCCCGCTTC-----------------------------------------------------------------  751
            ||   ||||                                                                 
Sbjct 1316  CC---CTTCCCCTTGCCACGCCTGGCAGGCTGTCTCCTTCTTTTCTGATGCTGCCCTCCACCTGCATCTGGGAC  1386

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 1387  CCTCTCCCTTGGGTGCTGTGGCTCTCCCTTCCTTCCTGCATCCTCATCTTGACTCTCCTGGGTCACTGCTGTCG  1460

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 1461  GCACACAGACATGCTGCACAATTTCTCCTTTTCTAGAAAAGTTCCTTCCTTAACCCCATAACAACAACTAACCA  1534

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 1535  CCCCGTTGTTGCTTCCCTTCATAGCAGAACTCAGACCTGCCTCTTCTTCCCCTCCCACCATTCTCTCAATCCAC  1608

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 1609  TTCTCAGGCTGACAATTCTGTCTCATCACAAATTGTTCTTGTCAACTCCACCACCAATTTCCATCAAGCCACAT  1682

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 1683  CTGGTCACTTGTGACTTTTTTTCATGTCCTTAATGTGCCTGCTCGGTAGGGTCAAAGACAGCAGTGCGCTCCCT  1756

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 1757  CCTTGACGCTTCCTTCACTTGGCCTTCCACCCACCATCGTGGTTTCCTCAGCCTTCCTGGCTGCTCCTCACTCC  1830

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 1831  ACTGCTGCTTCCTCTTCGAGTGCTGGGCCCAGCCTGGATTGGATCCCTTCTCTACCTGTGGTGCTGTAAATGCC  1904

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 1905  AGCCGGAAGGTCCTAATTCCCAAATGTGTATCTTCAGTCTCTTGCCACCTGGGGTTTCCCAATGCCCCCTCAGT  1978

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 1979  GTCTATACCTGGAGTTTCCATGGGTAGTCTCTCTCTGTTACCCAGGCTAGAGTGCAGTGGTGGAATCTTAGCTC  2052

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2053  ACTGCAGCCTCGAACTCCTGGGCTCAAATGATCCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGTGCA  2126

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2127  TGCCACCATGCCTGGTTAATTTTTAAAGTTTTTGGTAGAGATGAGGTCTTGCCATGTTGTTCAGGCTGATCTTG  2200

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2201  AACTCCTGGCCTCAAGCAATCCCCCTGTCTCGGCCTCCCAAAGTTCTGGGATGACTGATGTGAGCCACCATGCC  2274

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2275  TGGCCATCCTCCATTCTTTTTTTTTTTTGAGATGGAGTCTCACTCTTTCCCCCCAGGCTGGAGTGCGGTGGCTT  2348

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2349  GATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCCAGCGATTCTCTTGCGTCAGCCTCCCGAGTAGCTGGGA  2422

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2423  TTGCAGGCGCCCGCCCAACTAATTTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGTTC  2496

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2497  TCAAACTCCTGACCTCGTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGC  2570

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2571  CTGGCCTCATCCTCCATTCTTTACCATTCTTGATCATTCCTGTCTTTCCCTACATTTCACATCTTGTCAGCCTG  2644

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2645  TCATTGAGCCCTGCTGTCCGTCCCTCAGTGTGTATCCCCGTGCTGACCCTCCCTGCTTCCAACGAGCCTAATCC  2718

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2719  AGCACTGCCCCTAGCCTGGATTGCTGAACAGCTGCCTGTGTTGTCTCCTTGCCTTTGCAGTCTTTGCCTCTTTC  2792

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2793  AGATTATTTTCTGCATAGCAGCAAGACTGGTCTTTTTCTTTTTTTCTAAAATGTAAGTTGTATCTTGTCATTGC  2866

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2867  TCTTTTAGTGCCTTCATTGCAGTTGTGCTCCCCGCTCATGTTGATTTTCCTTAACACCCTTCACTGCTCTAAGT  2940

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 2941  CATACACATACCAGTTGACTTGGTTATTATTTGTATCTCCAGCTAGAGTGAAAACTTGGTGAGGACTGGTATTA  3014

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3015  TATCCCTGACATTAAAAATAGTGTCTTGTTAGTAAAAAGTGCTCAGTATTTTTCTGAATGAATAATTGATTATA  3088

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3089  AGGTAGTGAAGAGGGAGGTTATATCTGAGGTCCAGTTGACATGAGGGAAAGGTCTTAAGACCTTTAAGACATTT  3162

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3163  AAGAGGAAAAATGAGCCCAAAATGCATGTGTTTGGAAGGCCCACAGCTGGGCACAGCCATGCATGTTCCTCACG  3236

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3237  TCCACCATAGGTTTATGCTGCCTGACCCCTTGGGTCTTTGCTCATTTCCCTTAGTTTCCCTAGTCCATTCCCCA  3310

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3311  TGGGGAGCTGGGACCCTTCTGGATGACCTCTTCTCTGAGGCGCCCATCTCGTGCTCCCAGGGAGCACTCCCATC  3384

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3385  TCCTCCCTCCCAGGGGAAGTACACATTGCCTTATCTCCATGTGTCTTAGGATCCTTCTTGTCCTTACACTGGTG  3458

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3459  TCTTCAAACGACATGTCCTAAAAGTAAATGTGGGTAAGTTGAATGACCTGAGCATCCATTCCTCAGCTATTCAA  3532

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3533  AAAGTAGGGGTAGTGCCACCTATCTTGGCAGTGTGTTGAGGGTGCCCAGCACGTACCTTGCCATCCCTCGTTCT  3606

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3607  GTAGGCTCTCACTTCCAGTTCCTCAGATGAGGTACAGGGCAGGGAGGAGCTTCTCCCGTTACTGTCATCTCAGT  3680

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3681  CTAACCACATTCAGGACACTTGTTTATTTTAAATAAACAGGTGAATTAAGAAAAAGTTTTTTAAGTCTTTACCT  3754

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3755  AATCAGTCTCCAGGCTCTCTTTTTGGCCTGTTCCTCCCTTCCTCCTGGCCGCCTCCCTCCCATGCCTCTCATGT  3828

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3829  GCCTCCTGCAGGGCTGGGCCCCCACTTCTCTTGGGACCTGTGCTTTGGGGCACTCCCCGTCTTCACCTCCTTCC  3902

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3903  TTTAGCTCCATTGATGACTTTCCCCCTTGCTGCTTCTCCCATGGCTCACCTCTTGCCCCCTGGTTCGCCACTCT  3976

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 3977  GCCCTCACTTTGTACTCTTTGTAGAATCTTGAGATGACTCCTCCTGTGTCCCCAGCCCTGCTCTGCAGCTGCTC  4050

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 4051  CTGCTTTGTGCTGGCTCATCAGGCTCAGGCATCCGAATGGCAGCTCCTTGGCTTGCCCTGTCTCTGGTTTCTAC  4124

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 4125  GGATGGTCACAGGGGTCTTCGGGGTTACCCCGCCCTCTTTCCTTCTTCCCTCATACCCCTCAGTCCTTCCTTTT  4198

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 4199  CAGACCCTCCTTTCCATCCCTGTCTTCCTGCCCCCAAGCTGTGGGACCCTAAGCTCCTGCTGTGAACTGTCGAC  4272

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 4273  TGTGCTCTTGAAGTCTAGGTGATGATGTGTCATTGCATTGGTAGAAAGCGGCCTGCTTACTGCTGCTTAGCTGC  4346

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 4347  TTCCCGAAGAGGGAACAGACTGCTCGCTGGTGTTTAGGTCTCCATGCCCGGCCCAGCTCTCTCCTCCTCTGCCC  4420

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 4421  ACCCAACAACCTCTGTGGCCCGGATGGATGTTATCAGGAAGGAGGGTGTCCAGAGCGGGGAATTGTGTTATAGG  4494

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 4495  GAAGGTGGAGCATTTGAGAGAAGGGGCATCCGAGGCCACCAGACTCGGAGGTAAGCTTGCCATGGATTCACATG  4568

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 4569  GGGGCCAGTCGGGCAGCCCCATCCATCAGCTGTCCATCAGCTCATAGCTGTGTCTCCGCCACAGGTTCCCATTA  4642

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 4643  AGGATGTCGAGGCGGGGAATGGTGAGGAAGAGTCGGGCATGGGTGCTGGAGAAGAAGGAGCGGCACAGGCGCCA  4716

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 4717  GGGCAGGGAAGTCAGACCTGACACCCAGTACACCGGCCGCAAGCGCAAGCCCCGCTTCTAAGTCACCACGCGGT  4790

Query  752  --------------------------------------------------------------------------  751
                                                                                      
Sbjct 4791  TCTGGAAAGGCACTTGCCTCTGCACTTTTCTATATTGTTCAGCTGACAAAGTAGTATTTTAGAAAAGTTCTAAA  4864

Query  752  ------------------------------------------  751
                                                      
Sbjct 4865  GTTATAAAAATGTTTTCTGCAGTAAAAAAAAAGTTCTCTGGG  4906

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