Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14355
- Subject:
- XR_002956407.1
- Aligned Length:
- 4926
- Identities:
- 703
- Gaps:
- 4195
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATAAAAACCGGGTGCCGGCAGGCGCCAGTCGCAGGTGTGCTGCTGAGGCGTGAGAATGGCGTCCCGCGGCCGGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTCCGGAGCATGGCGGACCCCCAGAGCTGTTTTATGACGAGACAGAAGCCCGGAAATACGTTCGCAACTCACGG 148
Query 1 ATGATTGATATCCAGACCAGGATGGCTGGGCGAGCATTGGAGCTTCTTTATCTGCCAGAGAATAAGCCCTGTTA 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ATGATTGATATCCAGACCAGGATGGCTGGGCGAGCATTGGAGCTTCTTTATCTGCCAGAGAATAAGCCCTGTTA 222
Query 75 CCTGCTGGATATTGGCTGTGGCACTGGGCTGAGTGGAAGTTATCTGTCAGATGAAGGGCACTATTGGGTGGGCC 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCTGCTGGATATTGGCTGTGGCACTGGGCTGAGTGGAAGTTATCTGTCAGATGAAGGGCACTATTGGGTGGGCC 296
Query 149 TGGATATCAGCCCTGCCATGCTGGATGAGGCTGTGGACCGAGAGATAGAGGGAGACCTGCTGCTGGGGGATATG 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGGATATCAGCCCTGCCATGCTGGATGAGGCTGTGGACCGAGAGATAGAGGGAGACCTGCTGCTGGGGGATATG 370
Query 223 GGCCAGGGCATCCCATTCAAGCCAGGCACATTTGATGGTTGCATCAGCATTTCTGCTGTGCAGTGGCTCTGTAA 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GGCCAGGGCATCCCATTCAAGCCAGGCACATTTGATGGTTGCATCAGCATTTCTGCTGTGCAGTGGCTCTGTAA 444
Query 297 TGCTAACAAGAAGTCTGAAAACCCTGCCAAGCGCCTGTACTGCTTTTTTGCTTCTCTTTTTTCTGTTCTCGTCC 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGCTAACAAGAAGTCTGAAAACCCTGCCAAGCGCCTGTACTGCTTTTTTGCTTCTCTTTTTTCTGTTCTCGTCC 518
Query 371 GGGGATCCCGAGCTGTCCTGCAGCTGTACCCTGAGAACTCAGAGCAGTTGGAGCTGATCACAACCCAGGCCACA 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GGGGATCCCGAGCTGTCCTGCAGCTGTACCCTGAGAACTCAGAGCAGTTGGAGCTGATCACAACCCAGGCCACA 592
Query 445 AAGGCAGGCTTCTCCGGTGGCATGGTGGTAGACTACCCTAACAGTGCCAAAGCAAAGAAATTCTACCTCTGCTT 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AAGGCAGGCTTCTCCGGTGGCATGGTGGTAGACTACCCTAACAGTGCCAAAGCAAAGAAATTCTACCTCTGCTT 666
Query 519 GTTTTCTGGGCCTTCGACCTTTATACCAG--------------------------------------------- 547
|||||||||||||||||||||||||||||
Sbjct 667 GTTTTCTGGGCCTTCGACCTTTATACCAGAGGTGAGGGACACTGGGTTTGCAGGCAGGCCTGTGTCTTTTGACT 740
Query 548 -------------------------------------------------------------------------- 547
Sbjct 741 TCCAGGCAGTGGGGCTCAGCCTGCAGAGCCTGCTGGGAGAACACTGGTGGGGAAGCAGGGCCCAGCCCCAGAGT 814
Query 548 -------------------------------------------------------------------------- 547
Sbjct 815 GCAGACCCTGGAGTGCTCACATCCTCTGGAATCTGGAGGCAGAGACCTCTGCTCTGCAGGTCCCAGAAAGGCGT 888
Query 548 -------------------------------------------------------------------------- 547
Sbjct 889 GTCAGTTCCTTCTCGTGGGACTGGACCTCGTCCCTGTCGGAAGGGTCAGGCCTGGGTGCCTGGGCTTCTGGAGT 962
Query 548 -------------------------------------------------------AGGGGCTGAGTGAAAATCA 566
|||||||||||||||||||
Sbjct 963 GGGGCAGATGGTTTGAGAACTCTCCAGGGTGACCTGAGTGCACTTTGGTTCCTGCAGGGGCTGAGTGAAAATCA 1036
Query 567 GGATGAAGTTGAACCCAGGGAGTCTGTGTTCACCAATGAGAGGT--------TCCCATTAAGGATGTC------ 626
|||||||||||||||||||||||||||||||||||||||||||| |.| |.|||..||.|
Sbjct 1037 GGATGAAGTTGAACCCAGGGAGTCTGTGTTCACCAATGAGAGGTAAAGCAACTGC--TGAAGCCTGCCCCGGCT 1108
Query 627 GAGGCGGGG--------AATGGTGAGGAAGAGTCGGGCATGG---------GTGC------------------- 664
|..|||||| |.|.||.| |.||||| .|||
Sbjct 1109 GCAGCGGGGGCTGCCACATTTGTTA----------GACATGGACTTTCTCTCTGCCCTCACCCAAGCCTCTCAG 1172
Query 665 ------TGGAGAAG-------AAGGAG-CGGCA-------CAGGCGCCA-------------------GGGC-A 697
||.||.|| ||||.| |||.| ||||..||| |||| |
Sbjct 1173 GTCACATGCAGCAGGGACACCAAGGTGACGGTAGAAACATCAGGTCCCATTTGGACTGTGCCTGTTTGGGGCTA 1246
Query 698 G--------------GGAAGT-------CAGACCTGACACCCAGTACACC--------GGCCGCAAGCGCAAGC 742
| |||.|| |||.|.|| ||.||.|.||.|| |.||.|| ||.||
Sbjct 1247 GGGGTTTGGGGTCCTGGATGTCTGGGTGCAGCCATG-CAGCCTGGACTCCCTTTGTGAGCCCACA----CATGC 1315
Query 743 CCCCGCTTC----------------------------------------------------------------- 751
|| ||||
Sbjct 1316 CC---CTTCCCCTTGCCACGCCTGGCAGGCTGTCTCCTTCTTTTCTGATGCTGCCCTCCACCTGCATCTGGGAC 1386
Query 752 -------------------------------------------------------------------------- 751
Sbjct 1387 CCTCTCCCTTGGGTGCTGTGGCTCTCCCTTCCTTCCTGCATCCTCATCTTGACTCTCCTGGGTCACTGCTGTCG 1460
Query 752 -------------------------------------------------------------------------- 751
Sbjct 1461 GCACACAGACATGCTGCACAATTTCTCCTTTTCTAGAAAAGTTCCTTCCTTAACCCCATAACAACAACTAACCA 1534
Query 752 -------------------------------------------------------------------------- 751
Sbjct 1535 CCCCGTTGTTGCTTCCCTTCATAGCAGAACTCAGACCTGCCTCTTCTTCCCCTCCCACCATTCTCTCAATCCAC 1608
Query 752 -------------------------------------------------------------------------- 751
Sbjct 1609 TTCTCAGGCTGACAATTCTGTCTCATCACAAATTGTTCTTGTCAACTCCACCACCAATTTCCATCAAGCCACAT 1682
Query 752 -------------------------------------------------------------------------- 751
Sbjct 1683 CTGGTCACTTGTGACTTTTTTTCATGTCCTTAATGTGCCTGCTCGGTAGGGTCAAAGACAGCAGTGCGCTCCCT 1756
Query 752 -------------------------------------------------------------------------- 751
Sbjct 1757 CCTTGACGCTTCCTTCACTTGGCCTTCCACCCACCATCGTGGTTTCCTCAGCCTTCCTGGCTGCTCCTCACTCC 1830
Query 752 -------------------------------------------------------------------------- 751
Sbjct 1831 ACTGCTGCTTCCTCTTCGAGTGCTGGGCCCAGCCTGGATTGGATCCCTTCTCTACCTGTGGTGCTGTAAATGCC 1904
Query 752 -------------------------------------------------------------------------- 751
Sbjct 1905 AGCCGGAAGGTCCTAATTCCCAAATGTGTATCTTCAGTCTCTTGCCACCTGGGGTTTCCCAATGCCCCCTCAGT 1978
Query 752 -------------------------------------------------------------------------- 751
Sbjct 1979 GTCTATACCTGGAGTTTCCATGGGTAGTCTCTCTCTGTTACCCAGGCTAGAGTGCAGTGGTGGAATCTTAGCTC 2052
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2053 ACTGCAGCCTCGAACTCCTGGGCTCAAATGATCCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGTGCA 2126
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2127 TGCCACCATGCCTGGTTAATTTTTAAAGTTTTTGGTAGAGATGAGGTCTTGCCATGTTGTTCAGGCTGATCTTG 2200
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2201 AACTCCTGGCCTCAAGCAATCCCCCTGTCTCGGCCTCCCAAAGTTCTGGGATGACTGATGTGAGCCACCATGCC 2274
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2275 TGGCCATCCTCCATTCTTTTTTTTTTTTGAGATGGAGTCTCACTCTTTCCCCCCAGGCTGGAGTGCGGTGGCTT 2348
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2349 GATCTCGGCTCACTGCAACCTCTGCCTCCCAGGTTCCAGCGATTCTCTTGCGTCAGCCTCCCGAGTAGCTGGGA 2422
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2423 TTGCAGGCGCCCGCCCAACTAATTTTTTGTGTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGTTC 2496
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2497 TCAAACTCCTGACCTCGTGATTCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGC 2570
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2571 CTGGCCTCATCCTCCATTCTTTACCATTCTTGATCATTCCTGTCTTTCCCTACATTTCACATCTTGTCAGCCTG 2644
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2645 TCATTGAGCCCTGCTGTCCGTCCCTCAGTGTGTATCCCCGTGCTGACCCTCCCTGCTTCCAACGAGCCTAATCC 2718
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2719 AGCACTGCCCCTAGCCTGGATTGCTGAACAGCTGCCTGTGTTGTCTCCTTGCCTTTGCAGTCTTTGCCTCTTTC 2792
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2793 AGATTATTTTCTGCATAGCAGCAAGACTGGTCTTTTTCTTTTTTTCTAAAATGTAAGTTGTATCTTGTCATTGC 2866
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2867 TCTTTTAGTGCCTTCATTGCAGTTGTGCTCCCCGCTCATGTTGATTTTCCTTAACACCCTTCACTGCTCTAAGT 2940
Query 752 -------------------------------------------------------------------------- 751
Sbjct 2941 CATACACATACCAGTTGACTTGGTTATTATTTGTATCTCCAGCTAGAGTGAAAACTTGGTGAGGACTGGTATTA 3014
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3015 TATCCCTGACATTAAAAATAGTGTCTTGTTAGTAAAAAGTGCTCAGTATTTTTCTGAATGAATAATTGATTATA 3088
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3089 AGGTAGTGAAGAGGGAGGTTATATCTGAGGTCCAGTTGACATGAGGGAAAGGTCTTAAGACCTTTAAGACATTT 3162
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3163 AAGAGGAAAAATGAGCCCAAAATGCATGTGTTTGGAAGGCCCACAGCTGGGCACAGCCATGCATGTTCCTCACG 3236
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3237 TCCACCATAGGTTTATGCTGCCTGACCCCTTGGGTCTTTGCTCATTTCCCTTAGTTTCCCTAGTCCATTCCCCA 3310
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3311 TGGGGAGCTGGGACCCTTCTGGATGACCTCTTCTCTGAGGCGCCCATCTCGTGCTCCCAGGGAGCACTCCCATC 3384
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3385 TCCTCCCTCCCAGGGGAAGTACACATTGCCTTATCTCCATGTGTCTTAGGATCCTTCTTGTCCTTACACTGGTG 3458
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3459 TCTTCAAACGACATGTCCTAAAAGTAAATGTGGGTAAGTTGAATGACCTGAGCATCCATTCCTCAGCTATTCAA 3532
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3533 AAAGTAGGGGTAGTGCCACCTATCTTGGCAGTGTGTTGAGGGTGCCCAGCACGTACCTTGCCATCCCTCGTTCT 3606
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3607 GTAGGCTCTCACTTCCAGTTCCTCAGATGAGGTACAGGGCAGGGAGGAGCTTCTCCCGTTACTGTCATCTCAGT 3680
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3681 CTAACCACATTCAGGACACTTGTTTATTTTAAATAAACAGGTGAATTAAGAAAAAGTTTTTTAAGTCTTTACCT 3754
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3755 AATCAGTCTCCAGGCTCTCTTTTTGGCCTGTTCCTCCCTTCCTCCTGGCCGCCTCCCTCCCATGCCTCTCATGT 3828
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3829 GCCTCCTGCAGGGCTGGGCCCCCACTTCTCTTGGGACCTGTGCTTTGGGGCACTCCCCGTCTTCACCTCCTTCC 3902
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3903 TTTAGCTCCATTGATGACTTTCCCCCTTGCTGCTTCTCCCATGGCTCACCTCTTGCCCCCTGGTTCGCCACTCT 3976
Query 752 -------------------------------------------------------------------------- 751
Sbjct 3977 GCCCTCACTTTGTACTCTTTGTAGAATCTTGAGATGACTCCTCCTGTGTCCCCAGCCCTGCTCTGCAGCTGCTC 4050
Query 752 -------------------------------------------------------------------------- 751
Sbjct 4051 CTGCTTTGTGCTGGCTCATCAGGCTCAGGCATCCGAATGGCAGCTCCTTGGCTTGCCCTGTCTCTGGTTTCTAC 4124
Query 752 -------------------------------------------------------------------------- 751
Sbjct 4125 GGATGGTCACAGGGGTCTTCGGGGTTACCCCGCCCTCTTTCCTTCTTCCCTCATACCCCTCAGTCCTTCCTTTT 4198
Query 752 -------------------------------------------------------------------------- 751
Sbjct 4199 CAGACCCTCCTTTCCATCCCTGTCTTCCTGCCCCCAAGCTGTGGGACCCTAAGCTCCTGCTGTGAACTGTCGAC 4272
Query 752 -------------------------------------------------------------------------- 751
Sbjct 4273 TGTGCTCTTGAAGTCTAGGTGATGATGTGTCATTGCATTGGTAGAAAGCGGCCTGCTTACTGCTGCTTAGCTGC 4346
Query 752 -------------------------------------------------------------------------- 751
Sbjct 4347 TTCCCGAAGAGGGAACAGACTGCTCGCTGGTGTTTAGGTCTCCATGCCCGGCCCAGCTCTCTCCTCCTCTGCCC 4420
Query 752 -------------------------------------------------------------------------- 751
Sbjct 4421 ACCCAACAACCTCTGTGGCCCGGATGGATGTTATCAGGAAGGAGGGTGTCCAGAGCGGGGAATTGTGTTATAGG 4494
Query 752 -------------------------------------------------------------------------- 751
Sbjct 4495 GAAGGTGGAGCATTTGAGAGAAGGGGCATCCGAGGCCACCAGACTCGGAGGTAAGCTTGCCATGGATTCACATG 4568
Query 752 -------------------------------------------------------------------------- 751
Sbjct 4569 GGGGCCAGTCGGGCAGCCCCATCCATCAGCTGTCCATCAGCTCATAGCTGTGTCTCCGCCACAGGTTCCCATTA 4642
Query 752 -------------------------------------------------------------------------- 751
Sbjct 4643 AGGATGTCGAGGCGGGGAATGGTGAGGAAGAGTCGGGCATGGGTGCTGGAGAAGAAGGAGCGGCACAGGCGCCA 4716
Query 752 -------------------------------------------------------------------------- 751
Sbjct 4717 GGGCAGGGAAGTCAGACCTGACACCCAGTACACCGGCCGCAAGCGCAAGCCCCGCTTCTAAGTCACCACGCGGT 4790
Query 752 -------------------------------------------------------------------------- 751
Sbjct 4791 TCTGGAAAGGCACTTGCCTCTGCACTTTTCTATATTGTTCAGCTGACAAAGTAGTATTTTAGAAAAGTTCTAAA 4864
Query 752 ------------------------------------------ 751
Sbjct 4865 GTTATAAAAATGTTTTCTGCAGTAAAAAAAAAGTTCTCTGGG 4906
