Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14383
- Subject:
- XM_017011749.1
- Aligned Length:
- 3489
- Identities:
- 1771
- Gaps:
- 1616
Alignment
Query 1 ATGGCGACCTCCGAGAGGGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CTGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 ACGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GGACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGG 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 AGGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCT 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 GGGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATA 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 TGTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATC 518
||||||||||
Sbjct 1 ----------------------------------------------------------------ATGCCTTATC 10
Query 519 TCCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 11 TCCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAG 84
Query 593 GCGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTT 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 85 GCGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTT 158
Query 667 GGATGGCAATGAGATAGAAGAAATCAGTGGACTAGAGATGTGCAACAACCTAATTCACCTTAGTTTGGCCAACA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 GGATGGCAATGAGATAGAAGAAATCAGTGGACTAGAGATGTGCAACAACCTAATTCACCTTAGTTTGGCCAACA 232
Query 741 ATAAGATCACGACAATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTGTCTGAGCAATAACCAGATTGAG 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 ATAAGATCACGACAATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTGTCTGAGCAATAACCAGATTGAG 306
Query 815 ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 307 ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA 380
Query 889 AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG 454
Query 963 AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT 528
Query 1037 TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT 602
Query 1111 TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA 676
Query 1185 GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCTCCTTATCCCATGCTGATACTA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct 677 GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCCCCTTATCCCATGCTGATACTA 750
Query 1259 GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA 824
Query 1333 TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG 898
Query 1407 ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA 972
Query 1481 AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG 1554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 973 AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG 1046
Query 1555 AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT 1628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1047 AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT 1120
Query 1629 ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATATTAAA 1702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATATTAAA 1194
Query 1703 ATTAATCAGAATTTTCCGGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCCTACCAAAAACT 1776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ATTAATCAGAATTTTCCGGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCCTACCAAAAACT 1268
Query 1777 GAGTCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACTTGCCAAGAGTTTGGCTACAACTGCAG------ 1844
|||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 1269 GAGTCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGCAGGAG 1342
Query 1845 -----------ATGTTAAGA---------------CATCCCACCT------------------------GAAAC 1868
|.| |||| ||.|.||||| ||||
Sbjct 1343 CTCCCGCTAGCAAG--AAGACTGTCTCTGGGGTGCCAGCACACCTGGTTCCATCTCCCAGGTGCTTGGCGAAA- 1413
Query 1869 CTG-AAGC------------------GCATC---CTACAAAGTATATT----------TCTTCGAATAT----G 1906
||| |||| ||||| ||..||.|.|.||| .|.|.|||.|| |
Sbjct 1414 CTGCAAGCAGATGGCCAGATGACAGAGCATCTCTCTGGAATGCAAATTCATGCCAAGGACCTAGAAAATCAGAG 1487
Query 1907 GGTGATTTCCT-----------------------------------------------GCATTCTACAGACAG- 1932
.|| |..|||| ||.||||.|.|||||
Sbjct 1488 CGT-AACTCCTGCCCAGAACCAAGAGCTGGCTCAGGATGGAGAAACCCATCAAAAAGAGCTTTCTCCTGACAGC 1560
Query 1933 ---------------------AAACTACCTCATTAAAT----TTTGGGCCAAACTT--TCAG-----CCAAAA- 1973
.||| ||||||.|..|| ..|||| .||| |||| |||..|
Sbjct 1561 CATCTCAATCCTGAGCTCCCTCAAC-ACCTCAGTTCATCAGCACTGGG----TCTTCCTCAGCAGGCCCAGGAC 1629
Query 1974 --------AAACACCAGCGGAA-----------------AGAGATT---CTATACACAGACAG-CAC-GAGGCA 2017
|||| |||.||||| |||..|| ||| |.|||.|.|| ||| |||.||
Sbjct 1630 CTATCCCTAAAC-CCAACGGAAGAGGATGTCCAACAATCAGATCTTCCCCTA-AAACAAATAGCCACTGAGACA 1701
Query 2018 G----CCCGGCAAGCTCTAA-----------TGGGAAGGATACGCCCTGATCACAC-----------ACTCCTA 2065
| |||.| ||.|..|| ||||.|| .|.||| |||||.| .|||||.
Sbjct 1702 GATGTCCCTG--AGGTGGAAGCCAGTGAGGTTGGGCAG---TCTCCC--ATCACCCCGACCCTGGTGCCTCCTG 1768
Query 2066 T------TTC------------------------------------AAAGGGGTC----CAGTACCAG------ 2087
| ||| .||||.||| .||..||||
Sbjct 1769 TGCACCCTTCCCCTCCCTCGTCCCGCAGCCCTCAGCCAGGCCAGGACAAGGAGTCAGGGGAGGCCCAGGTAACC 1842
Query 2088 ----------CACCTCTCACCAGTGGTCTACACTATTATACA-------------ACT-----------TTAGA 2127
|.||||| ||||..|| .|.|||| ||| |.||
Sbjct 1843 CCTACTGGCCCTCCTCT--------GTCTGAAC--CTCTACAGGGACCTGGCCCCACTCCCCTCAGCCCTCAG- 1905
Query 2128 AGAACTCTGGA-----AAAGTTTTGA-TCTTTGTGAAGACTATTTTAAACCTCCA--------TTTGGACCAT- 2186
||||.||.||| ||| |||| || |||| ||||.|||| ||...|||||
Sbjct 1906 AGAATTCAGGATGAGGAAA---TTGAGTC-------AGAC------AAACTTCCACCCAGCAGTTCCCACCATG 1963
Query 2187 ATCCT-GAAAAGAGTGGGAAGGATTC------------CTTGGTTTCCATGAAA--TGTT--CATTGTTTC--- 2240
||||| .|||| ||||| ||||| |.|| |||| ||.| | |.|||
Sbjct 1964 ATCCTCCAAAA----------GATTCTTCCCACACTGACTTGG--TGCA-GAAACTTGCTGGC---GATTCTCA 2021
Query 2241 ---GGTTCTG----------------------------TCCGTGGTCA-----------AAAGAATTGC----- 2267
.|.|||| |||| .|||| ..||||.|||
Sbjct 2022 GCAAGCTCTGAAGGAGGAAACCTCCAAACCGGAAGCCATCCG-AGTCAGTATCCCTCACCCAGAACTGCCACAT 2094
Query 2268 --------CTT--------------TCCAGCCTCCGG--AGGGGAG---------CATTTCTTCACACCTAGGA 2308
||| ..|||||.|.|| ||||||| |.||.||| |||||.|
Sbjct 2095 CCCCAAGACTTAGCAACAGATACCAAGCAGCCCCAGGCCAGGGGAGCCCCGGGGACCTTGCTT----CCTAGAA 2164
Query 2309 -------------------------------TCAGGAG-----------CCAGTGACAGTGAGACCGAAGAGAC 2340
|||||.| ||||.| ||| |||.|| .|.||
Sbjct 2165 GCCGGCTGGCTCCCACTCGGCTGCCCCAGCCTCAGGTGCTGGCTCCCCTCCAGAG-CAG-GAGGCC---CACAC 2233
Query 2341 CCGGAAAGCACTACCTAT--------------------------ACAATCATTTTCACATGAAA--AAGA--GT 2384
|| || ||| ||||| ||||.| ||.|||.||| |.|| ||
Sbjct 2234 CC--AA---ACT-CCTATCGCCCAGCAGGGAAGAGGCTTTAGGAACAACC----TCCCATCAAACCATGACGGT 2297
Query 2385 CT------------CACCAAC-------ACAGACA-----ACACTCGGTCCCAGTCATCAGTCGCCCAGGTTCC 2434
|| ||||||| .|||||| |.|||...||||| ||| |||| |||
Sbjct 2298 CTCTCCCAGGCTTCCACCAACCCGGGAAGCAGACACCAGTAAACTTCCTCCCA-TCA------GCCC----TCC 2360
Query 2435 -AACGTCAAACCCACCCTCCC---TCCAATCCCTCAGG--GCC-----------GCAGG--------------- 2476
.|| |||||.||||| .|| ||..|.|||.|||| ||| |||.|
Sbjct 2361 GCAC-TCAAAACCACC--ACCAAATCTGAGCCCCCAGGCAGCCCACAGTCTTCAGCAAGTCCAGGAAGAGAAGG 2431
Query 2477 -------------------------------------------------------------------------- 2476
Sbjct 2432 TCAGTGAGGTGAAACTCCCTCTTATCAGTCCCCCCAGCCAGGAGCAAGCAGAACCTCGCATCCTCAGTCCCGCC 2505
Query 2477 -------------------------------------------------------------------------- 2476
Sbjct 2506 CAGGAGGAGGCGGCTCAGAAAGTGAGGCTCCCTCGCATTCCTGCTCCTCTTCCGGAGCCAGGGCTGCCCCAGAA 2579
Query 2477 -------------------------------------------------------------------------- 2476
Sbjct 2580 CTCGGGGACTCAGCCTGATCCAAGGCCTGCAAAGGAAAGGAAAGCTCCCCAAGCAGGCAGCTCCTCCAGGAGGA 2653
Query 2477 -------------------------------------------------------------------------- 2476
Sbjct 2654 AGATTCCAGACATGCGGGCCTCACCCCACAACCAGGGGCCACTTCAGCAGACAGGGGCTAGGGAAAAAAAGCTC 2727
Query 2477 -------------------------------------------------------------------------- 2476
Sbjct 2728 CCCAACCAGAAAGGGACGGCTAGAGGACTGGCACCTCTGGAAGAGGCACCACCTGGGAACCACCAGCCAGCCTT 2801
Query 2477 -------------------------------------------------------------------------- 2476
Sbjct 2802 GCAGCTAGAACCCCACGATCAGCCAGCTCCCACCATGGTGCCCGACGATCCCAACCCCAGCCCTCCTCTTGTTT 2875
Query 2477 ----------- 2476
Sbjct 2876 CTTGTCTAAGC 2886