Construct: ORF ccsbBroad304_14383
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003240.1_s304c1, BRDN0000462101
- Derived from:
- ccsbBroadEn_14383
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- LRGUK (136332)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14383
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 136332 | LRGUK | leucine rich repeats and gu... | NM_144648.3 | 99.8% | 1.9% | 16_17insG;1236C>T;1817C>T |
| 2 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_024446661.1 | 95% | 1.9% | (many diffs) |
| 3 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_024446659.1 | 93.9% | 1.9% | (many diffs) |
| 4 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_024446660.1 | 93.9% | 1.9% | (many diffs) |
| 5 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_024446662.1 | 79.9% | 2.3% | (many diffs) |
| 6 | human | 136332 | LRGUK | leucine rich repeats and gu... | XR_002956408.1 | 76.7% | (many diffs) | |
| 7 | human | 136332 | LRGUK | leucine rich repeats and gu... | XR_002956409.1 | 75.4% | (many diffs) | |
| 8 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_024446663.1 | 74.8% | 2.5% | (many diffs) |
| 9 | human | 136332 | LRGUK | leucine rich repeats and gu... | XR_002956410.1 | 74.4% | (many diffs) | |
| 10 | human | 136332 | LRGUK | leucine rich repeats and gu... | NM_001365701.2 | 65.4% | 1.3% | (many diffs) |
| 11 | human | 136332 | LRGUK | leucine rich repeats and gu... | NM_001365700.2 | 65.3% | 1.3% | (many diffs) |
| 12 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_024446658.1 | 59.3% | 1.4% | (many diffs) |
| 13 | human | 136332 | LRGUK | leucine rich repeats and gu... | XM_017011749.1 | 50.7% | 2.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 231
- ORF length:
- 162
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat ggcgacctcc gagaggggct ctcctgagga ccagagctgc ctctctcctg 121 agaggcttgg gcagatcccg aactggagcc cgatcgttac agtttcgcgc agaaaaagag 181 cgtcagcctt gctggtcttt tcccatgggg cagaagacga aaggcagctc taacatagcc 241 tcctcctacc tgctccagca gctcatgcac cgctatcagg agctggactc ggacggagat 301 gaggaccagg gcgagggcga ggcgggatcc gaggagtcct cagagtccga aatgctgaat 361 ttggaggagg aatttgatgg ggtcctgaga gaggaggctg tggccaaagc actccatcac 421 ttggggcgct caggctctgg gactgagcaa gtctacctca atctaacttt atcaggttgt 481 aatttaattg atgttagcat tctctgtgga tatgttcatc tacagaagtt ggatctttca 541 gcgaataaaa ttgaagattt atcttgtgtg agttgtatgc cttatctcct agaacttaat 601 gcttctcaaa ataatttgac tacgttcttc aatttcaagc cacccaaaaa cctcaagaag 661 gcggattttt cccacaacca aatttctgaa atttgtgatt tgtcagcgta tcatgctctc 721 actaaactaa ttttggatgg caatgagata gaagaaatca gtggactaga gatgtgcaac 781 aacctaattc accttagttt ggccaacaat aagatcacga caattaatgg cttaaacaag 841 ttaccaatca aaatactttg tctgagcaat aaccagattg agatgatcac aggtttggag 901 gatctgaaag ccctgcagaa cctggatctg tcccacaatc agataagcag cctccaaggc 961 ttagagaatc atgacctcct ggaagtgatc aacctggagg ataataagat tgctgagctg 1021 agagaaatag aatacattaa aaatttaccc atccttcgag ttctcaatct tctagaaaat 1081 ccaattcagg aaaagtctga atattggttc ttcgtaattt ttatgcttct gcgattaaca 1141 gaattagatc agaagaagat taaagtggaa gaaaaggttt cagcagtgaa taaatatgat 1201 cctccccctg aagtggttgc agctcaagac cacctgaccc atgttgtcaa cagcgtgatg 1261 cagccgcaga ggatctttga cagcactctt cccagcctgg atgctcctta tcccatgctg 1321 atactagctg gtcctgaagc ttgtgggaaa cgagagcttg cccatcgcct ctgcagacag 1381 tttagcactt acttcagata tggggcctgt cataccacaa gaccacctta ctttggagaa 1441 ggggatcgag ttgattatca ttttatctct caagacgttt ttgatgaaat ggtgaacatg 1501 gggaaattca ttctaacatt tagttatggt aatcacaagt atggattaaa tagggacacc 1561 gtagaaggta tcgcaagaga tggtttggca agctgtattc atatggaaat agaaggtgta 1621 agaagtttga aatattccta ttttgagcct cgttatatcc tggtggtgcc catgaacaag 1681 gaaaaatatg agggatattt gcggagaaaa ggattattca gtcgtgcaga aattgaattt 1741 gctgtctcca gagtggacct ttatattaaa attaatcaga attttccggg atattttgat 1801 gaggtaatca atgcagatga tctggatgtt gcctaccaaa aactgagtca gctcattaga 1861 gaataccttg gattgactga ggaacttgcc aagagtttgg ctacaactgc agatgttaag 1921 acatcccacc tgaaacctga agcgcatcct acaaagtata tttcttcgaa tatgggtgat 1981 ttcctgcatt ctacagacag aaactacctc attaaatttt gggccaaact ttcagccaaa 2041 aaaacaccag cggaaagaga ttctatacac agacagcacg aggcagcccg gcaagctcta 2101 atgggaagga tacgccctga tcacacactc ctatttcaaa ggggtccagt accagcacct 2161 ctcaccagtg gtctacacta ttatacaact ttagaagaac tctggaaaag ttttgatctt 2221 tgtgaagact attttaaacc tccatttgga ccatatcctg aaaagagtgg gaaggattcc 2281 ttggtttcca tgaaatgttc attgtttcgg ttctgtccgt ggtcaaaaga attgcctttc 2341 cagcctccgg aggggagcat ttcttcacac ctaggatcag gagccagtga cagtgagacc 2401 gaagagaccc ggaaagcact acctatacaa tcattttcac atgaaaaaga gtctcaccaa 2461 cacagacaac actcggtccc agtcatcagt cgcccaggtt ccaacgtcaa acccaccctc 2521 cctccaatcc ctcagggccg caggttgcca actttcttgt acaaagtggt tggtaagcct 2581 atccctaacc ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg 2641 cgcgttaagt cgacaatcaa cctctggatt a