Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14383
• Subject: XM_024446658.1
• Aligned Length: 3489
• Identities: 2071
• Gaps: 1316

Alignment

Query    1  ATGGCGACCTCCGAGAGGGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAA  74
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCGACCTCCGAGA-GGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAA  73

Query   75  CTGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   74  CTGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAG  147

Query  149  ACGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTC  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  148  ACGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTC  221

Query  223  GGACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGG  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  222  GGACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGG  295

Query  297  AGGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCT  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  AGGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCT  369

Query  371  GGGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATA  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  370  GGGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATA  443

Query  445  TGTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATC  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  444  TGTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATC  517

Query  519  TCCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
Sbjct  518  TCCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAA----  587

Query  593  GCGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTT  666
                                                                                      
Sbjct  588  --------------------------------------------------------------------------  587

Query  667  GGATGGCAATGAGATAGAAGAAATCAGTGGACTAGAGATGTGCAACAACCTAATTCACCTTAGTTTGGCCAACA  740
                                                                                      
Sbjct  588  --------------------------------------------------------------------------  587

Query  741  ATAAGATCACGACAATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTGTCTGAGCAATAACCAGATTGAG  814
                                                                   |||||||||||||||||||
Sbjct  588  -------------------------------------------------------GAGCAATAACCAGATTGAG  606

Query  815  ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA  888
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  607  ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA  680

Query  889  AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG  962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  681  AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG  754

Query  963  AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT  1036
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  755  AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT  828

Query 1037  TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT  1110
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  829  TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT  902

Query 1111  TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA  1184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  903  TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA  976

Query 1185  GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCTCCTTATCCCATGCTGATACTA  1258
            ||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||
Sbjct  977  GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCCCCTTATCCCATGCTGATACTA  1050

Query 1259  GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA  1332
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051  GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA  1124

Query 1333  TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG  1406
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125  TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG  1198

Query 1407  ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA  1480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199  ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA  1272

Query 1481  AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG  1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273  AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG  1346

Query 1555  AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT  1628
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347  AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT  1420

Query 1629  ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATATTAAA  1702
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1421  ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATATTAAA  1494

Query 1703  ATTAATCAGAATTTTCCGGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCCTACCAAAAACT  1776
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495  ATTAATCAGAATTTTCCGGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCCTACCAAAAACT  1568

Query 1777  GAGTCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACTTGCCAAGAGTTTGGCTACAACTGCAG------  1844
            |||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||      
Sbjct 1569  GAGTCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGCAGGAG  1642

Query 1845  -----------ATGTTAAGA---------------CATCCCACCT------------------------GAAAC  1868
                       |.|  ||||               ||.|.|||||                        |||| 
Sbjct 1643  CTCCCGCTAGCAAG--AAGACTGTCTCTGGGGTGCCAGCACACCTGGTTCCATCTCCCAGGTGCTTGGCGAAA-  1713

Query 1869  CTG-AAGC------------------GCATC---CTACAAAGTATATT----------TCTTCGAATAT----G  1906
            ||| ||||                  |||||   ||..||.|.|.|||          .|.|.|||.||    |
Sbjct 1714  CTGCAAGCAGATGGCCAGATGACAGAGCATCTCTCTGGAATGCAAATTCATGCCAAGGACCTAGAAAATCAGAG  1787

Query 1907  GGTGATTTCCT-----------------------------------------------GCATTCTACAGACAG-  1932
            .|| |..||||                                               ||.||||.|.||||| 
Sbjct 1788  CGT-AACTCCTGCCCAGAACCAAGAGCTGGCTCAGGATGGAGAAACCCATCAAAAAGAGCTTTCTCCTGACAGC  1860

Query 1933  ---------------------AAACTACCTCATTAAAT----TTTGGGCCAAACTT--TCAG-----CCAAAA-  1973
                                 .||| ||||||.|..||    ..||||    .|||  ||||     |||..| 
Sbjct 1861  CATCTCAATCCTGAGCTCCCTCAAC-ACCTCAGTTCATCAGCACTGGG----TCTTCCTCAGCAGGCCCAGGAC  1929

Query 1974  --------AAACACCAGCGGAA-----------------AGAGATT---CTATACACAGACAG-CAC-GAGGCA  2017
                    |||| |||.|||||                 |||..||   ||| |.|||.|.|| ||| |||.||
Sbjct 1930  CTATCCCTAAAC-CCAACGGAAGAGGATGTCCAACAATCAGATCTTCCCCTA-AAACAAATAGCCACTGAGACA  2001

Query 2018  G----CCCGGCAAGCTCTAA-----------TGGGAAGGATACGCCCTGATCACAC-----------ACTCCTA  2065
            |    |||.|  ||.|..||           ||||.||   .|.|||  |||||.|           .|||||.
Sbjct 2002  GATGTCCCTG--AGGTGGAAGCCAGTGAGGTTGGGCAG---TCTCCC--ATCACCCCGACCCTGGTGCCTCCTG  2068

Query 2066  T------TTC------------------------------------AAAGGGGTC----CAGTACCAG------  2087
            |      |||                                    .||||.|||    .||..||||      
Sbjct 2069  TGCACCCTTCCCCTCCCTCGTCCCGCAGCCCTCAGCCAGGCCAGGACAAGGAGTCAGGGGAGGCCCAGGTAACC  2142

Query 2088  ----------CACCTCTCACCAGTGGTCTACACTATTATACA-------------ACT-----------TTAGA  2127
                      |.|||||        ||||..||  .|.||||             |||           |.|| 
Sbjct 2143  CCTACTGGCCCTCCTCT--------GTCTGAAC--CTCTACAGGGACCTGGCCCCACTCCCCTCAGCCCTCAG-  2205

Query 2128  AGAACTCTGGA-----AAAGTTTTGA-TCTTTGTGAAGACTATTTTAAACCTCCA--------TTTGGACCAT-  2186
            ||||.||.|||     |||   |||| ||       ||||      ||||.||||        ||...||||| 
Sbjct 2206  AGAATTCAGGATGAGGAAA---TTGAGTC-------AGAC------AAACTTCCACCCAGCAGTTCCCACCATG  2263

Query 2187  ATCCT-GAAAAGAGTGGGAAGGATTC------------CTTGGTTTCCATGAAA--TGTT--CATTGTTTC---  2240
            ||||| .||||          |||||            |||||  |.|| ||||  ||.|  |   |.|||   
Sbjct 2264  ATCCTCCAAAA----------GATTCTTCCCACACTGACTTGG--TGCA-GAAACTTGCTGGC---GATTCTCA  2321

Query 2241  ---GGTTCTG----------------------------TCCGTGGTCA-----------AAAGAATTGC-----  2267
               .|.||||                            |||| .||||           ..||||.|||     
Sbjct 2322  GCAAGCTCTGAAGGAGGAAACCTCCAAACCGGAAGCCATCCG-AGTCAGTATCCCTCACCCAGAACTGCCACAT  2394

Query 2268  --------CTT--------------TCCAGCCTCCGG--AGGGGAG---------CATTTCTTCACACCTAGGA  2308
                    |||              ..|||||.|.||  |||||||         |.||.|||    |||||.|
Sbjct 2395  CCCCAAGACTTAGCAACAGATACCAAGCAGCCCCAGGCCAGGGGAGCCCCGGGGACCTTGCTT----CCTAGAA  2464

Query 2309  -------------------------------TCAGGAG-----------CCAGTGACAGTGAGACCGAAGAGAC  2340
                                           |||||.|           ||||.| ||| |||.||   .|.||
Sbjct 2465  GCCGGCTGGCTCCCACTCGGCTGCCCCAGCCTCAGGTGCTGGCTCCCCTCCAGAG-CAG-GAGGCC---CACAC  2533

Query 2341  CCGGAAAGCACTACCTAT--------------------------ACAATCATTTTCACATGAAA--AAGA--GT  2384
            ||  ||   ||| |||||                          ||||.|    ||.|||.|||  |.||  ||
Sbjct 2534  CC--AA---ACT-CCTATCGCCCAGCAGGGAAGAGGCTTTAGGAACAACC----TCCCATCAAACCATGACGGT  2597

Query 2385  CT------------CACCAAC-------ACAGACA-----ACACTCGGTCCCAGTCATCAGTCGCCCAGGTTCC  2434
            ||            |||||||       .||||||     |.|||...||||| |||      ||||    |||
Sbjct 2598  CTCTCCCAGGCTTCCACCAACCCGGGAAGCAGACACCAGTAAACTTCCTCCCA-TCA------GCCC----TCC  2660

Query 2435  -AACGTCAAACCCACCCTCCC---TCCAATCCCTCAGG--GCC-----------GCAGG---------------  2476
             .|| |||||.|||||  .||   ||..|.|||.||||  |||           |||.|               
Sbjct 2661  GCAC-TCAAAACCACC--ACCAAATCTGAGCCCCCAGGCAGCCCACAGTCTTCAGCAAGTCCAGGAAGAGAAGG  2731

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 2732  TCAGTGAGGTGAAACTCCCTCTTATCAGTCCCCCCAGCCAGGAGCAAGCAGAACCTCGCATCCTCAGTCCCGCC  2805

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 2806  CAGGAGGAGGCGGCTCAGAAAGTGAGGCTCCCTCGCATTCCTGCTCCTCTTCCGGAGCCAGGGCTGCCCCAGAA  2879

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 2880  CTCGGGGACTCAGCCTGATCCAAGGCCTGCAAAGGAAAGGAAAGCTCCCCAAGCAGGCAGCTCCTCCAGGAGGA  2953

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 2954  AGATTCCAGACATGCGGGCCTCACCCCACAACCAGGGGCCACTTCAGCAGACAGGGGCTAGGGAAAAAAAGCTC  3027

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 3028  CCCAACCAGAAAGGGACGGCTAGAGGACTGGCACCTCTGGAAGAGGCACCACCTGGGAACCACCAGCCAGCCTT  3101

Query 2477  --------------------------------------------------------------------------  2476
                                                                                      
Sbjct 3102  GCAGCTAGAACCCCACGATCAGCCAGCTCCCACCATGGTGCCCGACGATCCCAACCCCAGCCCTCCTCTTGTTT  3175

Query 2477  -----------  2476
                       
Sbjct 3176  CTTGTCTAAGC  3186