Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14427
Subject:
XM_006503154.2
Aligned Length:
1817
Identities:
1361
Gaps:
244

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATGGAGCCAGGCAACCTTTCCCAGCCCGAGTCCAGCCTCCCTGCCATTGCTCCCTTGCCTGATTCAGACCCAGA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CCCACAAGCCCTGCTGTTAGCCCGACAGAGAGAGTACAAGGCGGCTGCTCTCGATGCCAAGCGGGCTGGAGATC  148

Query    1  --------------------ATGAGGATTGGGAAGAGATTCGGTGCTGTCCTGGAGGCCCTGGAGAAGGGGCAG  54
                                ||||||||.|||||||||||.|||.|||||||.|||||||||||.|||||.|||
Sbjct  149  TAGACCGTGCTCGGGAGCTCATGAGGATCGGGAAGAGATTTGGTACTGTCCTAGAGGCCCTGGAAAAGGGTCAG  222

Query   55  CCCGTGGATCTGAGTGCCATGCCCCCGGCACCTGAGGATCTGAAG-----CCCCAGCAGGCTTCTCAGGCTCCC  123
            ||.|||||.|||||||.|||||||||.|||||||.||||||||||     ||||  |||||||||.||||..||
Sbjct  223  CCTGTGGACCTGAGTGGCATGCCCCCAGCACCTGCGGATCTGAAGGCCCTCCCC--CAGGCTTCTAAGGCCTCC  294

Query  124  ACAGCACCCTCAGTCATTCCCCCAGCCGTGGAGCGAGTGCAGCCAGTGATGGCCCCTGACGTCCCAGCAACCCC  197
            .|||||.||..||.|.|..|||||||.||.||||.|.|||||||||||||||||.|||||.|||||||.|||||
Sbjct  295  TCAGCAACCCAAGGCCTGTCCCCAGCAGTAGAGCAAATGCAGCCAGTGATGGCCTCTGACCTCCCAGCCACCCC  368

Query  198  AGTGGCCCCTACAGAGTC-ACAGACAGTGCTGGATGCCCTGCAGCAGAGGCTGAACAAGTACCGCGAGGCGGGC  270
            ||||||||||.|.|||.| ||| ||||||||||||||..|.|||||.||||||||||||||.||.|||||.|||
Sbjct  369  AGTGGCCCCTGCGGAGCCAACA-ACAGTGCTGGATGCTTTACAGCAAAGGCTGAACAAGTATCGTGAGGCAGGC  441

Query  271  ATCCAGGCCCGGAGTGG----TGGGGACGAGCGCAAGGCTCGGATGCATGAGCGCATTGCCAAGCAATATCAAG  340
            |||||||||||    ||    ||||||.|||||||||||..|||||||.||.||||||||||||||||||||.|
Sbjct  442  ATCCAGGCCCG----GGCCAATGGGGATGAGCGCAAGGCCAGGATGCACGATCGCATTGCCAAGCAATATCAGG  511

Query  341  ATGCTATTCGAGCACACCGAGCAGGACGGAAAGTCAACTTTGCTGAATTGCCTGTTCCTCCAGGATTTCCCCCC  414
            |||||.|||||||.||.|..|||||||.||||||..|||||||.||.||.||||||||||||||||||||.|||
Sbjct  512  ATGCTGTTCGAGCTCATCAGGCAGGACAGAAAGTTGACTTTGCCGAGTTACCTGTTCCTCCAGGATTTCCTCCC  585

Query  415  ATCCCTGGCCTGGAGTCCACTATGGGTGTTGAGGAGGACGCAGTGGCAGCGACATTGGCAGCTGCAGAGAAACT  488
            |||||||||||||||.|||..|..|||..||||.||||..||||||||||.||.||.|||.||||..|.|||||
Sbjct  586  ATCCCTGGCCTGGAGCCCAGGAAAGGTAGTGAGCAGGATTCAGTGGCAGCAACTTTAGCAACTGCCCAAAAACT  659

Query  489  GGCCTCTGCAGAGGATTCAGCCCCGGCTGATAAAGACGAGGACGAGGGTGAGCCCCCAGCACAGGCCCCAGTGG  562
            |||||   ||||.|||.||||||.||..|||   |||||.||.|||.||||..|.|||||||||||||||.|||
Sbjct  660  GGCCT---CAGAAGATGCAGCCCTGGTAGAT---GACGACGAGGAGAGTGACACTCCAGCACAGGCCCCATTGG  727

Query  563  CCAAGAAACCTGCACGGCCCACAGTCCCTTCATCCCAGCGCCTGCCTGAGCCCAGGGCCTCAAGTTCTAAGGAG  636
            |||||||.||.||.|.|.|....|||.||.|||||||.|..|||.|||||||||.|||.|||||||||||||||
Sbjct  728  CCAAGAAGCCAGCGCAGACTCTGGTCTCTCCATCCCATCTTCTGACTGAGCCCAAGGCTTCAAGTTCTAAGGAG  801

Query  637  TCACCGAGTCCATCTGTGCGGGAGCAGCTGGCACTGCTGGAGGCACGGAAACTGCAGTATCAGCGGGCAGCCCT  710
            ||||.||||||||||||.|||||||||.||.|||||||||||||.|||||||||||.||.|||||.|||||.||
Sbjct  802  TCACTGAGTCCATCTGTTCGGGAGCAGGTGACACTGCTGGAGGCTCGGAAACTGCAATACCAGCGAGCAGCTCT  875

Query  711  GCAGGCCAAGCGCAGCCAGGACCTGGAGCAGGCCAAAGCCTATCTGCGGGTAGCCAAATGGCTTGAGGCTCAGA  784
            |||.|||||||||||.|||||.||.||||||||||||.||.|..|.||.|||||.|||.|.|||||||||||||
Sbjct  876  GCAAGCCAAGCGCAGGCAGGATCTTGAGCAGGCCAAATCCCACTTACGAGTAGCTAAAAGTCTTGAGGCTCAGA  949

Query  785  TCATCCAGGCCCGATCTGG-CAGACCTGTTGATCTGTCCAAGGTGCCTTCGCCCTTGACGGATGAGGAGGGTGA  857
            ||||||||||||||.|||| || |||..|||||||.||||||||||||||.||.|||||.|||||.|||||.||
Sbjct  950  TCATCCAGGCCCGAGCTGGTCA-ACCCATTGATCTCTCCAAGGTGCCTTCACCGTTGACAGATGAAGAGGGGGA  1022

Query  858  CTTCATCCTCATCCACCATGAGGACCTGCGACTCTCCCAGAAGGCGGAGGAGGTGTATGCCCAGCTGCAAAAAA  931
            ||||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||||||||.||.||||
Sbjct 1023  CTTCATCCTCATTCACCATGAGGATCTGCGACTCTCCCAGAAGGCTGAGGAGGTGTATGCCCAGCTACAGAAAA  1096

Query  932  TGCTTCTGGAGCAACAAGAGAAGTGCCTGCTGTTCTCCAAGCAGTTCATGCACCAGGGCAACGTGGCTGAGACC  1005
            ||||.|.||||||.||||.||||||||||||.|||||||||||||.||||||||||||.||.||||||||||||
Sbjct 1097  TGCTCCAGGAGCAGCAAGCGAAGTGCCTGCTATTCTCCAAGCAGTACATGCACCAGGGAAATGTGGCTGAGACC  1170

Query 1006  ACCCGATTTGAGAAGCTTGCTCAGGACCGCAAGAAACAGCTGGAGATCCTGCAGCTGGCCCAGGCTCAGGGCCT  1079
            ||.||.|||||||.||||||..|||||||.|||||||||||.||||||||||||||.|||||.||.||||||||
Sbjct 1171  ACTCGGTTTGAGAGGCTTGCGGAGGACCGAAAGAAACAGCTTGAGATCCTGCAGCTAGCCCAAGCCCAGGGCCT  1244

Query 1080  CGACCCTCCCACCCACCACTTTGAGTTGAAGACATTCCAGACTGTGAGGATCTTCTCAGAACTCAACAGCACAG  1153
            .||||||||.|..||.|||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1245  TGACCCTCCTAGTCATCACTTTGAGCTGAAGACATTCCAGACTGTGAGGATCTTCTCAGAACTCAACAGCACAG  1318

Query 1154  AAATGCATCTGATCATTGTCCGGGGAATGAACCTCCCAGCCCCTCCAGGGGTGACTCCCGATGACCTGGATGCT  1227
            ||||||||||||||||.||.|||||||||||||||||||||||.|||||.||||||||.||||||.||||||||
Sbjct 1319  AAATGCATCTGATCATCGTGCGGGGAATGAACCTCCCAGCCCCGCCAGGAGTGACTCCGGATGACTTGGATGCT  1392

Query 1228  TTTGTGCGGTTTGAGTTTCACTACCCTAACTCGGACCAGGCTCAAAAAAGCAAAACAGCTGTGGTGAAGAACAC  1301
            |||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||.||.||
Sbjct 1393  TTTGTACGGTTTGAGTTTCACTACCCTAACTCGGACCAGGCTCAAAAAAGCAAAACAGCTGTGGTAAAAAATAC  1466

Query 1302  AAACTCTCCAGAATTTGATCAACTCTTCAAACTAAACATCAACCGAAACCACCGGGGCTTCAAGAGGGTGATCC  1375
            .||.||||||||||||||.|||.|.|||||.|||||||||||.|||||||||||.|||||.|.|||.|||||||
Sbjct 1467  CAATTCTCCAGAATTTGAACAAGTTTTCAAGCTAAACATCAATCGAAACCACCGAGGCTTTAGGAGAGTGATCC  1540

Query 1376  AGAGCAAAGGCATCAAGTTTGAGATCTTCCACAAAGGGTCCTTCTTCAGAAGCGACAAGCTGGTTGGCACAGCA  1449
            ||||||||||.|||||.||||||||||||||||||||.|||||.||.|||||.|||||||||||||||||||||
Sbjct 1541  AGAGCAAAGGAATCAAATTTGAGATCTTCCACAAAGGATCCTTTTTTAGAAGTGACAAGCTGGTTGGCACAGCA  1614

Query 1450  CACCTGAAACTGGAGCGGCTGGAGAATGAGTGTGAGATCAGAGAAATTGTGGAGGTCCTGGATGGAAGGAAGCC  1523
            |||.|||||.||||..||||||||||.|||||||||||||||||.||..|||||||..|||||||.||.|||||
Sbjct 1615  CACTTGAAATTGGAAAGGCTGGAGAAGGAGTGTGAGATCAGAGAGATCATGGAGGTTTTGGATGGCAGAAAGCC  1688

Query 1524  CACCGGGGGGAAGCTGGAGGTGAAGCCGATG--------GCC----AGCA-CCAGGAGATGAGTCAGGCCGCGA  1584
            |||.|||||||||||||||||||||..||.|        |||    |||| ||||||..||   |||.|.|..|
Sbjct 1689  CACTGGGGGGAAGCTGGAGGTGAAGGTGAGGCTTCGGGAGCCTCTGAGCAGCCAGGACGTG---CAGACGGTCA  1759

Query 1585  CTGTGCAGGAGA-----------------------------  1596
            ||      ||||                             
Sbjct 1760  CT------GAGAACTGGCTGGTCCTGGAGCCTCGGGGCCTG  1794

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.