Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14427
- Subject:
- XR_376325.2
- Aligned Length:
- 3404
- Identities:
- 1355
- Gaps:
- 1831
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGCGCCTGCCACCGCCTCCTGGGCGGGAGCTTCCTGTGGCTGTCTCCGCCGCGGCCGCCCGGGGGCCGCGGAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 AGCTAGGCGGTTCCGGGCTCGAGAAGGCCCGGTTTTGGTTCGGATCCGCCGCGAGGTATCTAGCCTGCCAAGAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GCCAGGGCCAAGACCTCGGAAGGGCCCTAAGACCAGTGGCCAGGGTGCTGAGACTGCCAAGCAGCTGGGGCTTT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TTGTGGAGTTCAACCCTGAGGACATGCTCCTGGGGGTGGATGAGACTGAAGATGATGGAGACCTGGAGGCTGAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 TTACTGGCACTCACAGGGGAAACAGCGAGCAGGAGCAGGAAGCCAGCACCCAAGGGGCAGGCTCCACTGCCCAT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GGCCCACATTGAGAAGCTGGCAGCAGACTGTATGCGAGATGTGGAGGAGGATGAAGAAGAGGAAGGGCTGGAGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 ACGATGCAGACCTTCTGACAGAGCTGCAGGAGGTCCTGGGTGAGGATGAAGAAGCGGGTCTGCTGGACGGCAGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GAGGCAGCAAGTCCAGACCTCTGTGAGGAGAAGACTTGGGACAACACTGAACTACCTGTAGAGCAGGCAGCCTG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCAACAGGCAGTACCTGCTGCAGCTCAGGCTGGAGGGCCTCGGGGGCTGCAGGCTTTGCTGGAGGAACGGATCC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GTAACTACCGGGAGGCCGCAGCCAGTGCCAAGGAGGCTGGTGAAGCTGCCAAAGCCCGGCGCTGTGAGCGAGGC 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTAAAGACTCTGCAGTCCCAGCTTGCCACTGTGAGGAAAGGCGGGAAGATCTGTGAGGATGAGATCCCACCTCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 AGTAGCCTTGGGCAAAAGGCCCCCAGCCCCCCAGGAAAGAGCCATCAAGAACCCTGAGATAGACTCTCCAGGTC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CCTGTGCCATGGAGCCAGGCAACCTTTCCCAGCCCGAGTCCAGCCTCCCTGCCATTGCTCCCTTGCCTGATTCA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GACCCAGACCCACAAGCCCTGCTGTTAGCCCGACAGAGAGAGTACAAGGCGGCTGCTCTCGATGCCAAGCGGGC 1036
Query 1 ----------------------------ATGAGGATTGGGAAGAGATTCGGTGCTGTCCTGGAGGCCCTGGAGA 46
||||||||.|||||||||||.|||.|||||||.|||||||||||.|
Sbjct 1037 TGGAGATCTAGACCGTGCTCGGGAGCTCATGAGGATCGGGAAGAGATTTGGTACTGTCCTAGAGGCCCTGGAAA 1110
Query 47 AGGGGCAGCCCGTGGATCTGAGTGCCATGCCCCCGGCACCTGAGGATCTGAAG-----CCCCAGCAGGCTTCTC 115
||||.|||||.|||||.|||||||.|||||||||.|||||||.|||||||||| |||| |||||||||.
Sbjct 1111 AGGGTCAGCCTGTGGACCTGAGTGGCATGCCCCCAGCACCTGCGGATCTGAAGGCCCTCCCC--CAGGCTTCTA 1182
Query 116 AGGCTCCCACAGCACCCTCAGTCATTCCCCCAGCCGTGGAGCGAGTGCAGCCAGTGATGGCCCCTGACGTCCCA 189
||||..||.|||||.||..||.|.|..|||||||.||.||||.|.|||||||||||||||||.|||||.|||||
Sbjct 1183 AGGCCTCCTCAGCAACCCAAGGCCTGTCCCCAGCAGTAGAGCAAATGCAGCCAGTGATGGCCTCTGACCTCCCA 1256
Query 190 GCAACCCCAGTGGCCCCTACAGAGTC-ACAGACAGTGCTGGATGCCCTGCAGCAGAGGCTGAACAAGTACCGCG 262
||.|||||||||||||||.|.|||.| ||| ||||||||||||||..|.|||||.||||||||||||||.||.|
Sbjct 1257 GCCACCCCAGTGGCCCCTGCGGAGCCAACA-ACAGTGCTGGATGCTTTACAGCAAAGGCTGAACAAGTATCGTG 1329
Query 263 AGGCGGGCATCCAGGCCCGGAGTGG----TGGGGACGAGCGCAAGGCTCGGATGCATGAGCGCATTGCCAAGCA 332
||||.|||||||||||||| || ||||||.|||||||||||..|||||||.||.||||||||||||||
Sbjct 1330 AGGCAGGCATCCAGGCCCG----GGCCAATGGGGATGAGCGCAAGGCCAGGATGCACGATCGCATTGCCAAGCA 1399
Query 333 ATATCAAGATGCTATTCGAGCACACCGAGCAGGACGGAAAGTCAACTTTGCTGAATTGCCTGTTCCTCCAGGAT 406
||||||.||||||.|||||||.||.|..|||||||.||||||..|||||||.||.||.||||||||||||||||
Sbjct 1400 ATATCAGGATGCTGTTCGAGCTCATCAGGCAGGACAGAAAGTTGACTTTGCCGAGTTACCTGTTCCTCCAGGAT 1473
Query 407 TTCCCCCCATCCCTGGCCTGGAGTCCACTATGGGTGTTGAGGAGGACGCAGTGGCAGCGACATTGGCAGCTGCA 480
||||.||||||||||||||||||.|||..|..|||..||||.||||..||||||||||.||.||.|||.||||.
Sbjct 1474 TTCCTCCCATCCCTGGCCTGGAGCCCAGGAAAGGTAGTGAGCAGGATTCAGTGGCAGCAACTTTAGCAACTGCC 1547
Query 481 GAGAAACTGGCCTCTGCAGAGGATTCAGCCCCGGCTGATAAAGACGAGGACGAGGGTGAGCCCCCAGCACAGGC 554
.|.|||||||||| ||||.|||.||||||.||..||| |||||.||.|||.||||..|.|||||||||||
Sbjct 1548 CAAAAACTGGCCT---CAGAAGATGCAGCCCTGGTAGAT---GACGACGAGGAGAGTGACACTCCAGCACAGGC 1615
Query 555 CCCAGTGGCCAAGAAACCTGCACGGCCCACAGTCCCTTCATCCCAGCGCCTGCCTGAGCCCAGGGCCTCAAGTT 628
||||.||||||||||.||.||.|.|.|....|||.||.|||||||.|..|||.|||||||||.|||.|||||||
Sbjct 1616 CCCATTGGCCAAGAAGCCAGCGCAGACTCTGGTCTCTCCATCCCATCTTCTGACTGAGCCCAAGGCTTCAAGTT 1689
Query 629 CTAAGGAGTCACCGAGTCCATCTGTGCGGGAGCAGCTGGCACTGCTGGAGGCACGGAAACTGCAGTATCAGCGG 702
||||||||||||.||||||||||||.|||||||||.||.|||||||||||||.|||||||||||.||.|||||.
Sbjct 1690 CTAAGGAGTCACTGAGTCCATCTGTTCGGGAGCAGGTGACACTGCTGGAGGCTCGGAAACTGCAATACCAGCGA 1763
Query 703 GCAGCCCTGCAGGCCAAGCGCAGCCAGGACCTGGAGCAGGCCAAAGCCTATCTGCGGGTAGCCAAATGGCTTGA 776
|||||.|||||.|||||||||||.|||||.||.||||||||||||.||.|..|.||.|||||.|||.|.|||||
Sbjct 1764 GCAGCTCTGCAAGCCAAGCGCAGGCAGGATCTTGAGCAGGCCAAATCCCACTTACGAGTAGCTAAAAGTCTTGA 1837
Query 777 GGCTCAGATCATCCAGGCCCGATCTGG-CAGACCTGTTGATCTGTCCAAGGTGCCTTCGCCCTTGACGGATGAG 849
||||||||||||||||||||||.|||| || |||..|||||||.||||||||||||||.||.|||||.|||||.
Sbjct 1838 GGCTCAGATCATCCAGGCCCGAGCTGGTCA-ACCCATTGATCTCTCCAAGGTGCCTTCACCGTTGACAGATGAA 1910
Query 850 GAGGGTGACTTCATCCTCATCCACCATGAGGACCTGCGACTCTCCCAGAAGGCGGAGGAGGTGTATGCCCAGCT 923
|||||.||||||||||||||.|||||||||||.||||||||||||||||||||.||||||||||||||||||||
Sbjct 1911 GAGGGGGACTTCATCCTCATTCACCATGAGGATCTGCGACTCTCCCAGAAGGCTGAGGAGGTGTATGCCCAGCT 1984
Query 924 GCAAAAAATGCTTCTGGAGCAACAAGAGAAGTGCCTGCTGTTCTCCAAGCAGTTCATGCACCAGGGCAACGTGG 997
.||.||||||||.|.||||||.||||.||||||||||||.|||||||||||||.||||||||||||.||.||||
Sbjct 1985 ACAGAAAATGCTCCAGGAGCAGCAAGCGAAGTGCCTGCTATTCTCCAAGCAGTACATGCACCAGGGAAATGTGG 2058
Query 998 CTGAGACCACCCGATTTGAGAAGCTTGCTCAGGACCGCAAGAAACAGCTGGAGATCCTGCAGCTGGCCCAGGCT 1071
||||||||||.||.|||||||.||||||..|||||||.|||||||||||.||||||||||||||.|||||.||.
Sbjct 2059 CTGAGACCACTCGGTTTGAGAGGCTTGCGGAGGACCGAAAGAAACAGCTTGAGATCCTGCAGCTAGCCCAAGCC 2132
Query 1072 CAGGGCCTCGACCCTCCCACCCACCACTTTGAGTTGAAGACATTCCAGACTGTGAGGATCTTCTCAGAACTCAA 1145
||||||||.||||||||.|..||.|||||||||.||||||||||||||||||||||||||||||||||||||||
Sbjct 2133 CAGGGCCTTGACCCTCCTAGTCATCACTTTGAGCTGAAGACATTCCAGACTGTGAGGATCTTCTCAGAACTCAA 2206
Query 1146 CAGCACAGAAATGCATCTGATCATTGTCCGGGGAATGAACCTCCCAGCCCCTCCAGGGGTGACTCCCGATGACC 1219
||||||||||||||||||||||||.||.|||||||||||||||||||||||.|||||.||||||||.||||||.
Sbjct 2207 CAGCACAGAAATGCATCTGATCATCGTGCGGGGAATGAACCTCCCAGCCCCGCCAGGAGTGACTCCGGATGACT 2280
Query 1220 TGGATGCTTTTG---------------------------------------TGCGGTTTGAGTTTC-------- 1246
|||||||||||| |.|.|.|||||||.|
Sbjct 2281 TGGATGCTTTTGCACTGCCACAGGGAGGGGCTGAAGACCCTCTGGCCCATTTCCTGCTTGAGTTGCTTTCTGCA 2354
Query 1247 ----------------------------------------------------ACTACCCT-AACTC-------- 1259
|||.|.|| |.|||
Sbjct 2355 CTTTTGACTCAGCCAAAGTGTTGTGCTTAAACACATGGTTTTTGAGCTCTCAACTTCTCTCATCTCTCTGCTAT 2428
Query 1260 -GGACCAGGCTCAAAAAAGCAAAACAGCTGTGGTGAAGAACACAAACTCTCCAGAATTTGATCAACTCTTCAAA 1332
|||||||||||||||||||||||||||||||||.||.||.||.||.||||||||||||||.|||.|.|||||.
Sbjct 2429 AGGACCAGGCTCAAAAAAGCAAAACAGCTGTGGTAAAAAATACCAATTCTCCAGAATTTGAACAAGTTTTCAAG 2502
Query 1333 CTAAACATCAACCGAAACCACCGGGGCTTCAAGAGGGTGATCCAGAGCAAAGGCATCAAGTTTGAGATCTTCCA 1406
|||||||||||.|||||||||||.|||||.|.|||.|||||||||||||||||.|||||.||||||||||||||
Sbjct 2503 CTAAACATCAATCGAAACCACCGAGGCTTTAGGAGAGTGATCCAGAGCAAAGGAATCAAATTTGAGATCTTCCA 2576
Query 1407 CAAAGGGTCCTTCTTCAGAAGCGACAAGCTGGTTGGCACAGCACACCTGAAACTGGAGCGGCTGGAGAATGAGT 1480
||||||.|||||.||.|||||.||||||||||||||||||||||||.|||||.||||..||||||||||.||||
Sbjct 2577 CAAAGGATCCTTTTTTAGAAGTGACAAGCTGGTTGGCACAGCACACTTGAAATTGGAAAGGCTGGAGAAGGAGT 2650
Query 1481 GTGAGATCAGAGAAATTGTGGAGGTCCTGGATGGAAGGAAGCCCACCGGGGGGAAGCTGGAGGTGAAGCCGATG 1554
|||||||||||||.||..|||||||..|||||||.||.||||||||.|||||||||||||||||||||..||.|
Sbjct 2651 GTGAGATCAGAGAGATCATGGAGGTTTTGGATGGCAGAAAGCCCACTGGGGGGAAGCTGGAGGTGAAGGTGAGG 2724
Query 1555 --------GCC----AGCA-CCAGGAGATGAGTCAGGCCGCGACTGTGCAGGAGA------------------- 1596
||| |||| ||||||..|| |||.|.|..||| ||||
Sbjct 2725 CTTCGGGAGCCTCTGAGCAGCCAGGACGTG---CAGACGGTCACT------GAGAACTGGCTGGTCCTGGAGCC 2789
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2790 TCGGGGCCTGTGAAGAGGTGGACATCCTTGGTAACAGCTCACTGACCCAGCTGTGCCGGCTCAAGAGCCGTTGT 2863
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2864 ACATCAGAGATGCTGCTACACACGCACCAAAGACCTGATAACTAACAGTGGCCTGGGCTTTCCTCCTGCTGCCT 2937
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 2938 CTCCTGGACCTTCGTGGAAGCAGGCCTCCCACCCTCCCTGTGGGCGAAGACAAGGATACCCCACTGCTCTGTGC 3011
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3012 CACAGAGTCCCGTAACCGCTGCATAGTAATTGCGTACCGCTTAACCCAGCCCCCATTTGCACCATTTCTGGATG 3085
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3086 TGCCTTTCAAAGATGTAACTGTAGGGATGGGAGAACTCGAGGGTGATCGGAACATCCCGTGTGGGGAGGGACAG 3159
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3160 GATTCCGTGACTCCAGCTGGCCAGCGGCAGACTGTCCCGCTCAGCTGTTTTCCCTCTGCCTGTGCCTTTGTTCC 3233
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3234 TGACAGCTGCTGCACTAGCCTTTCTGCTTCCCAGAGGACTCGGGAACAGGAACGTTACTTTGGTACTATTGGTG 3307
Query 1597 -------------------------------------------------------------------------- 1596
Sbjct 3308 GGAAGTAAGGGAAGGTTCTCTTTGGTTTGGTCCATGTACCTAAGGTGAAAGACTGTTAATTGGGGAGAAAAAAA 3381
