Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14546
Subject:
NM_001190974.1
Aligned Length:
2742
Identities:
2142
Gaps:
156

Alignment

Query    1  ATGGCGTGGCGGTGCCCCAGGATGGGCAGGGTCCCGCTGGCCTGGTGCTTGGCGCTGTGCGGCTGGGCGTGCAT  74
                                 ||||||||||||||||||||||||||.||||||||||||.||||||.|||  |
Sbjct    1  ---------------------ATGGGCAGGGTCCCGCTGGCCTGGTGGTTGGCGCTGTGCTGCTGGGGGTG--T  51

Query   75  G--GCCCCCAGGGGCACGCAGGCTGA---AGAAAGTCCCTTCGTGGGCAACCCAGGGAATATCACAGGTGCCCG  143
            |  ||||..|.||.|||.|||.|.||   .|..||.||.||.|||||.||||||||||||||||||||||||.|
Sbjct   52  GCAGCCCATAAGGACACACAGACCGAGGCTGGCAGCCCGTTTGTGGGGAACCCAGGGAATATCACAGGTGCCAG  125

Query  144  GGGACTCACGGGCACCCTTCGGTGTCAGCTCCAGGTTCAGGGAGAGCCCCCCGAGGTACATTGGCTTCGGGATG  217
            .|||||||||||.||.|||||||||.||||||||||||||||.||.|||||.|||||....||||||||.||||
Sbjct  126  AGGACTCACGGGGACACTTCGGTGTGAGCTCCAGGTTCAGGGGGAACCCCCTGAGGTGGTGTGGCTTCGAGATG  199

Query  218  GACAGATCCTGGAGCTCGCGGACAGCACCCAGACCCAGGTGCCCCTGGGTGAGGA-TGAACAGGATGACTGGAT  290
            ||||||||||.||.||.||.||.|.||||||||||||||||||.|||||.||.|| || .||.|||||.||||.
Sbjct  200  GACAGATCCTAGAACTGGCTGATAACACCCAGACCCAGGTGCCTCTGGGCGAAGACTG-GCAAGATGAATGGAA  272

Query  291  AGTGGTCAGCCAGCTCAGAATCACCTCCCTGCAGCTTTCCGA--CACGGGACAGTACCAGTGTTTGGTGTTTCT  362
            |||.|||||.||||||||||||.|..|||||||.|||||.||  ||.|||  |||||||||||.|||||..|||
Sbjct  273  AGTTGTCAGTCAGCTCAGAATCTCAGCCCTGCAACTTTCAGATGCAGGGG--AGTACCAGTGTATGGTGCATCT  344

Query  363  GGGACATCAGACCTTCGTGTCCCAGCCTGGCTATGTTGGGCTGGAGGGCTTGCCTTACTTCCTGGAGGAGCCCG  436
            .|.|...|.||||||.|||||.|||||.||||.|||.||||||||.||..|.||.|||||||||||||||||.|
Sbjct  345  AGAAGGACGGACCTTTGTGTCTCAGCCGGGCTTTGTAGGGCTGGAAGGTCTCCCGTACTTCCTGGAGGAGCCTG  418

Query  437  AAGACAGGACTGTGGCCGCCAACACCCCCTTCAACCTGAGCTGCCAAGCTCAGGGACCCCCAGAGCCCGTGGAC  510
            |.||||...|||||.|.|||||||||||.||||||||.||||||||.||.|||||||||||.||.||||||..|
Sbjct  419  AGGACAAAGCTGTGCCTGCCAACACCCCTTTCAACCTAAGCTGCCAGGCCCAGGGACCCCCGGAACCCGTGACC  492

Query  511  CTACTCTGGCTCCAGGATGCTGTCCCCCTGGCCACGGCTC-CAGGTCACGGCCCCCAGCGCAGCCTGCATGTTC  583
            |||||||||||.||.||||||||||||||||||.|.| || ||||.|||.||.||||||.|||.|||||...||
Sbjct  493  CTACTCTGGCTTCAAGATGCTGTCCCCCTGGCCCCAG-TCACAGGACACAGCTCCCAGCACAGTCTGCAAACTC  565

Query  584  CAGGGCTGAACAAGACATCCTCTTTCTCCTGCGAAGCCCATAACGCCAAGGGGGTCACCACATCCCGCACAGCC  657
            ||||.||||||||||||||.||||||||.||.||||||||.||.||||||||.||||||||.||||||||||||
Sbjct  566  CAGGCCTGAACAAGACATCTTCTTTCTCATGTGAAGCCCACAATGCCAAGGGAGTCACCACCTCCCGCACAGCC  639

Query  658  ACCATCACAGTGCTCCCCCAGCAGCCCCGTAACCTCCACCTGGTCTCCCGCCAACCCACGGAGCTGGAGGTGGC  731
            |||||||||||||||||||||..|||.|...|.||||||.||||.|||.|.|||||.||||||||.|||||.||
Sbjct  640  ACCATCACAGTGCTCCCCCAGAGGCCTCACCATCTCCACGTGGTTTCCAGACAACCTACGGAGCTAGAGGTAGC  713

Query  732  TTGGACTCCAGGCCTGAGCGGCATCTACCCCCTGACCCACTGCACCCTGCAGGCTGTGCTGTCAGACGATGGGA  805
            ||||||.||.||||||||.|||||||||||.||.||||||||||.|||||||||.||||||||||||||||||.
Sbjct  714  TTGGACCCCTGGCCTGAGTGGCATCTACCCGCTCACCCACTGCAACCTGCAGGCCGTGCTGTCAGACGATGGGG  787

Query  806  TGGGCATCCAGGC-GGGAGAACCAGACCCCCCAGAGGAGCCCCTCACCTCGCAAGCATCCGTGCCCCCCCATCA  878
            ||||.|| |.||| ||||.|..||||.||.||.||.||.||||||||||.|||||.|||.|||||||||||.||
Sbjct  788  TGGGTAT-CTGGCTGGGAAAGTCAGATCCTCCTGAAGACCCCCTCACCTTGCAAGTATCAGTGCCCCCCCACCA  860

Query  879  GCTTCGGCTAGGCAGCCTCCATCCTCACACCCCTTATCACATCCGCGTGGCATGCACCAGCAGCCAGGGCCCCT  952
            |||||||||.|..|..||||.||||||||||||.|||||||||||..|..|.||||.|||||||||||||||||
Sbjct  861  GCTTCGGCTGGAAAAGCTCCTTCCTCACACCCCGTATCACATCCGGATATCCTGCAGCAGCAGCCAGGGCCCCT  934

Query  953  CATCCTGGACCCACTGGCTTCCTGTGGAGACGCCGGAGGGAGTGCCCCTGGGCCCCCCTGAGAACATTAGTGCT  1026
            ||.|.||||||||||||||||||||||||||..|.||||||||||||.||||.||||||||||||.||||.||.
Sbjct  935  CACCTTGGACCCACTGGCTTCCTGTGGAGACCACAGAGGGAGTGCCCTTGGGTCCCCCTGAGAACGTTAGCGCC  1008

Query 1027  ACGCGGAATGGGAGCCAGGCCTTCGTGCATTGGCAAGAGCCCCGGGCGCCCCTGCAGGGTACCCTGTTAGGGTA  1100
            |.|||||||||||||||||.|.||||||.||||||.|||||..|||.|||||||||.||.||||||||||||||
Sbjct 1009  ATGCGGAATGGGAGCCAGGTCCTCGTGCGTTGGCAGGAGCCAAGGGTGCCCCTGCAAGGCACCCTGTTAGGGTA  1082

Query 1101  CCGGCTGGCGTATCAAGGCCAGGACACCCCAGAGGTGCTAATGGACATAGGGCTAAGGCAAGAGGTGACCCTGG  1174
            |||||||||.||||.|||||||||||||||.|||||.||.|||||.||||||||||..|.||||||||||.|||
Sbjct 1083  CCGGCTGGCATATCGAGGCCAGGACACCCCCGAGGTACTTATGGATATAGGGCTAACTCGAGAGGTGACCTTGG  1156

Query 1175  AGCTGCAGGGGGACGGGTCTGTGTCCAATCTGACAGTGTGTGTGGCAGCCTACACTGCTGCTGGGGATGGACCC  1248
            |.||||.|||||||.||.|||||.|.||.|||||.||||.||||.|||||||.||..|.|||||||||||.|||
Sbjct 1157  AACTGCGGGGGGACAGGCCTGTGGCTAACCTGACTGTGTCTGTGACAGCCTATACCTCGGCTGGGGATGGGCCC  1230

Query 1249  TGGAGCCTCCCAGTACCCCTGGAGGCCTGGCGCCCAGGGCAAGCACAGCCAGTCCACCAGCTGGTGAAGGAACC  1322
            ||||||||.||.||.|||||.|||.|||||||||||                           ||||..|||||
Sbjct 1231  TGGAGCCTTCCTGTGCCCCTAGAGCCCTGGCGCCCA---------------------------GTGAGTGAACC  1277

Query 1323  TTCAACTCCTGCCTTCTCGTGGCCCTGGTGGTATGTACTGCTAGGAGCAGTCGTGGCCGCTGCCTGTGTCCTCA  1396
            ..||.|||..||||||||||||||.|||||||||||||||||.||||||.|.|||||.||.|||||.|||||||
Sbjct 1278  CCCACCTCGCGCCTTCTCGTGGCCTTGGTGGTATGTACTGCTGGGAGCACTTGTGGCTGCCGCCTGCGTCCTCA  1351

Query 1397  TCTTGGCTCTCTTCCTTGTCCACCGGCGAAAGAAGGAGACCCGTTATGGAGAAGTGTTTGAACCAACAGTGGAA  1470
            |||||||.||.|||||||||||.|||.|.|||||||||||.||.|||||.||.||||||||.|||||.||||||
Sbjct 1352  TCTTGGCCCTGTTCCTTGTCCATCGGAGGAAGAAGGAGACTCGATATGGGGAGGTGTTTGAGCCAACCGTGGAA  1425

Query 1471  AGAGGTGAACTGGTAGTCAGGTACCGCGTGCGCAAGTCCTACAGTCGTCGGACCACTGAAGCTACCTTGAACAG  1544
            ||||||||||||||||||||||||||.||.||.|||||||||||.||.||||||||||||||.|||||||||||
Sbjct 1426  AGAGGTGAACTGGTAGTCAGGTACCGTGTCCGAAAGTCCTACAGCCGGCGGACCACTGAAGCCACCTTGAACAG  1499

Query 1545  CCTGGGCATCAGTGAAGAGCTGAAGGAGAAGCTGCGGGATGTGATGGTGGACCGGCACAAGGTGGCCCTGGGGA  1618
            .|||||||||||||||||||||||||||||.||.||.||.||.|||||.||.|||||.|||||||||.||||||
Sbjct 1500  TCTGGGCATCAGTGAAGAGCTGAAGGAGAAACTACGAGACGTCATGGTAGATCGGCATAAGGTGGCCTTGGGGA  1573

Query 1619  AGACTCTGGGAGAGGGAGAGTTTGGAGCTGTGATGGAAGGCCAGCTCAACCAGGACGACTCCATCCTCAAGGTG  1692
            ||||.||||||||.|||||.|||||.||||||||||||||.||||||||.|||||.|||||||||||||||||.
Sbjct 1574  AGACCCTGGGAGAAGGAGAATTTGGCGCTGTGATGGAAGGTCAGCTCAATCAGGATGACTCCATCCTCAAGGTC  1647

Query 1693  GCTGTGAAGACGATGAAGATTGCCATCTGCACGAGGTCAGAGCTGGAGGATTTCCTGAGTGAAGCGGTCTGCAT  1766
            |||||||||||.|||||.||||||||||||||.||.|||||||||||||||||||||||||||||.||||||||
Sbjct 1648  GCTGTGAAGACCATGAAAATTGCCATCTGCACAAGATCAGAGCTGGAGGATTTCCTGAGTGAAGCTGTCTGCAT  1721

Query 1767  GAAGGAATTTGACCATCCCAACGTCATGAGGCTCATCGGTGTCTGTTTCCAGGGTTCTGAACGAGAGAGCTTCC  1840
            |||||||||||||||.||||||||||||||||||||.||.||||||||.|||||.|||||..|||||.|.||||
Sbjct 1722  GAAGGAATTTGACCACCCCAACGTCATGAGGCTCATTGGCGTCTGTTTTCAGGGCTCTGACAGAGAGGGTTTCC  1795

Query 1841  CAGCACCTGTGGTCATCTTACCTTTCATGAAACATGGAGACCTACACAGCTTCCTCCTCTATTCCCGGCTCGGG  1914
            |||.|||||||||||||||.||||||||||||||.||||||||||||||.||||||||.||.||||||||||||
Sbjct 1796  CAGAACCTGTGGTCATCTTGCCTTTCATGAAACACGGAGACCTACACAGTTTCCTCCTGTACTCCCGGCTCGGG  1869

Query 1915  GACCAGCCAGTGTACCTGCCCACTCAGATGCTAGTGAAGTTCATGGCAGACATCGCCAGTGGCATGGAGTATCT  1988
            |||||||||||||.|||||||||||||||||||||||||||||||||.|||||.||||||||.||||||||.||
Sbjct 1870  GACCAGCCAGTGTTCCTGCCCACTCAGATGCTAGTGAAGTTCATGGCCGACATTGCCAGTGGTATGGAGTACCT  1943

Query 1989  GAGTACCAAGAGATTCATACACCGGGACCTGGGGGTCAG--ATTTTTGCCTAGCTCACATCCCCACATCTCC--  2058
            |||||||||||||||||||||.||||||||||..|.|||  |   .|||.| |||.| ||....||||.|||  
Sbjct 1944  GAGTACCAAGAGATTCATACATCGGGACCTGGCTGCCAGGAA---CTGCAT-GCTGA-ATGAGAACATGTCCGT  2012

Query 2059  -CCTGTACCAGATGTCGCTTCGAGTTCTACAAAAAGATCGGACATC----ATGTCCTACTCCCGGCACGTGTTG  2127
             ..|||..||||     |||||.|.|||.|||.|||||| .|||.|    ||    ||||.|||.||.| |..|
Sbjct 2013  GTGTGTGGCAGA-----CTTCGGGCTCTCCAAGAAGATC-TACAACGGGGAT----TACTACCGCCAAG-GGCG  2075

Query 2128  TATGTGGCAAGGATACCAGTCAATGTGGATTGGCAATGCACA-AGTATAGCACAACCATT----TCTACTCCAT  2196
            .|| ||.||| |||.|||||||| ||||||||..|.||   | |||.|.|||.|     |    |||||.|||.
Sbjct 2076  CAT-TGCCAA-GATGCCAGTCAA-GTGGATTGCTATTG---AGAGTCTGGCAGA-----TCGGGTCTACACCAG  2138

Query 2197  CAAGAGGGACATGTGGTGCTT-----TAAGGAAGCCCAACGCGGCTGATTCCCACACGAGGCCAA--TCCAGAT  2263
            ||||||.||..||||||.|||     |.|       |||.|.||..|||..||||.|||||||||  |||  .|
Sbjct 2139  CAAGAGCGATGTGTGGTCCTTCGGTGTGA-------CAATGTGGGAGATCGCCACCCGAGGCCAAACTCC--CT  2203

Query 2264  ATGCA--GGTGATAAAACACTG-GACTTTATG-CTCTTTACGCCGGGGCAATGGCCTGAAGCAGCTGGCGGAGT  2333
            ||.||  |||| .|.||||.|| || ||||.| ||...|.||.|..||.|||.|.|||||.||||..|.|||.|
Sbjct 2204  ATCCAGGGGTG-GAGAACAGTGAGA-TTTACGACTACCTGCGTCAAGGAAATCGGCTGAAACAGCCTGTGGACT  2275

Query 2334  GTATCGATGGTCCGTATGCCC-GATATCGCGGCGCTGGTAGCTAAAGCCCCAGGACAGCTCAA-TTAATCAAAG  2405
            ||.|.||.||.|.|||||||| |||.||.|||.|||||.|.||.||.||.|..|||.|..||| ||...|..||
Sbjct 2276  GTCTGGACGGCCTGTATGCCCTGATGTCTCGGTGCTGGGAACTGAACCCTCGAGACCGGCCAAGTTTTGCGGAG  2349

Query 2406  CTGCC------ACTGCTTTGTAGAACACGGT-CAGGC-CTGCCCATTTCCCAGGAGCCAGACGTAATCCTCTTT  2471
            || ||      ||    |||.|||||||..| .|||| ||||||..|.|.|||||||||||.|.||||||| |.
Sbjct 2350  CT-CCGGGAAGAC----TTGGAGAACACACTGAAGGCTCTGCCCCCTGCTCAGGAGCCAGATGAAATCCTC-TA  2417

Query 2472  TTTCCCCCTGCACGAGGGCAGAGGTTACTCTGTCCCCCTCGTAGACACAAGAGGAGCTGAGCCACCAGTCCAGC  2545
            |.||..|.||.|.||||||.||.|..||..||..||||..|..|...|..||||||||||.||.|||..|||.|
Sbjct 2418  TGTCAACATGGATGAGGGCGGAAGCCACCTTGAACCCCGTGGGGCTGCTGGAGGAGCTGACCCCCCAACCCAAC  2491

Query 2546  CGGACCATAAGGATACCAGTAGGTGCCTCCCTGCGGTTCAGGTCCA-TCCGCATGGAGGGTATGTCC-AGGACC  2617
            |.||.|.|||||||.||.||||.||.|||.||||.|.|.|.||||| ||.|| ||||.|.||||||| ..|.||
Sbjct 2492  CTGATCCTAAGGATTCCTGTAGCTGTCTCACTGCAGCTGACGTCCACTCAGC-TGGACGCTATGTCCTTTGTCC  2564

Query 2618  ATTCCCCAACCCCTAGCCCCGCTCAG-CGGGTCA-ATAGGGTCTCCGCCA-CAGCCCCAGGGCAGGAGGA-GGA  2687
             |||..||.||||..|.|||.|||.| |.|.|.| |.|||  ||.| ||| ||.|.|||||||||||||| |||
Sbjct 2565  -TTCTACAGCCCCAGGACCCACTCTGTCTGCTGACAGAGG--CTGC-CCAGCACCTCCAGGGCAGGAGGACGGA  2634

Query 2688  TGCC  2691
             |||
Sbjct 2635  -GCC  2637

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