Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14570
• Subject: NM_001347308.1
• Aligned Length: 2367
• Identities: 1937
• Gaps: 132

Alignment

Query    1  ATGGGTGATGAAAAGGACTCTTGGAAAGTGAAAACTTTAGATGAAATTCTTCAGGAAAAGAAACGAAGGAAGGA  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  ACAAGAGGAGAAAGCAGAGATAAAACGCTTAAAAAAT-------TCTGATGACCGGGATTCCAAGCGGGATTCC  141
                                               ||       |||||||||||.||||||||..||||||||
Sbjct    1  -----------------------------------ATGTCACAGTCTGATGACCGCGATTCCAAAAGGGATTCC  39

Query  142  CTTGAGGAGGGGGAGCTGAGAGATCACCGCATGGAGATCACAATAAGGAACTCCCCGTATAGAAGAGAAGACTC  215
            |||||||||||||||||||||||||||||.||||||||||||||.||||||||.||.|||||||||||.||.||
Sbjct   40  CTTGAGGAGGGGGAGCTGAGAGATCACCGAATGGAGATCACAATCAGGAACTCACCATATAGAAGAGAGGATTC  113

Query  216  TATGGAAGACAGAGGAGAAGAAGATGATTCTTTGGCCATCAAACCACCCCAGCAAATGTCTCGGAAAGAAAAAG  289
            ||||||||||||||||||.||.|||||||||.||||||||||||||||||||||||||||||||||||||||.|
Sbjct  114  TATGGAAGACAGAGGAGAGGAGGATGATTCTCTGGCCATCAAACCACCCCAGCAAATGTCTCGGAAAGAAAAGG  187

Query  290  CTCATCACAGAAAAGATGAAAAGAGAAAAGAGAAACGTAGGCATCGTAGCCATTCAGCAGAAGGGGGGAAGCAT  363
            ||||||||||||||||.||.||.|||||||||||||||.|.||||||||||||||||||||.||.|||||.|||
Sbjct  188  CTCATCACAGAAAAGACGAGAAAAGAAAAGAGAAACGTCGACATCGTAGCCATTCAGCAGAGGGAGGGAAACAT  261

Query  364  GCTAGAGTGAAAGAAAAAGAAAGAGAGCACGAACGTCGGAAACGGCATCGAGAAGAACAGGATAAAGCTCGCCG  437
            ||.|||||||||||.||||||||.|||||||||||.||||||||.||.|||||||||||.|||||||||||..|
Sbjct  262  GCCAGAGTGAAAGAGAAAGAAAGGGAGCACGAACGCCGGAAACGCCACCGAGAAGAACAAGATAAAGCTCGAAG  335

Query  438  GGAATGGGAAAGACAGAAGAGAAGGGAGATGGCAAGGGAGCATTCCAGGAGAGAAAGGGACCGCTTGGAGCAGT  511
            |||.|||||||||||||||||.|||||.|||||.||.||.||||||||.|||||.|||||||||.|||||||||
Sbjct  336  GGAGTGGGAAAGACAGAAGAGGAGGGAAATGGCGAGAGAACATTCCAGAAGAGAGAGGGACCGCCTGGAGCAGT  409

Query  512  TAGAAAGGAAGCGGGAGCGGGAGCGCAAGATGCGGGAGCAGCAGAAGGAGCAGCGGGAGCAGAAGGAGCGCGAG  585
            |||||||||||.|||||||||||||||||.||.|||||||||||||||||||||||||||||||||||||.||.
Sbjct  410  TAGAAAGGAAGAGGGAGCGGGAGCGCAAGCTGAGGGAGCAGCAGAAGGAGCAGCGGGAGCAGAAGGAGCGGGAA  483

Query  586  CGGCGGGCGGAGGAGCGGCGCAAGGAGCGGGAGGCCCGCAGGGAAGTGTCTGCACATCACCGAACGATGAGAGA  659
            |||.||||.||||||||.|||||.|||.|.||.||.||.||||||||.||||||||||||||.||.|||||.||
Sbjct  484  CGGAGGGCAGAGGAGCGCCGCAAAGAGAGAGAAGCGCGTAGGGAAGTCTCTGCACATCACCGTACCATGAGGGA  557

Query  660  GGACTACAGCGACAAAGTGAAAGCCAGCCACTGGAGTCGCAGCCCGCCTCGGCCGCCGCGGGAGCGGTTCGAGT  733
            |||.|||||.||.||.|.|||.|...||||||||||.||||||||.|...||||.||..|.|||||.||.|||.
Sbjct  558  GGAGTACAGTGATAAGGGGAAGGTTGGCCACTGGAGCCGCAGCCCTCTGAGGCCACCAAGAGAGCGCTTTGAGA  631

Query  734  TGGGAGACGGCCGGGAAGCCAGTAAAAG-AGAGAAAATGGAAGAAAGGGACCTGCTGTCCGACTTACAGGACAT  806
            ||||||||..|| ||||||||||||||| ||||||..|||||||.||.|||.||.||||.|||.|.||.|||||
Sbjct  632  TGGGAGACAACC-GGAAGCCAGTAAAAGAAGAGAAGGTGGAAGAGAGAGACTTGTTGTCAGACCTCCAAGACAT  704

Query  807  CAGCGACAGCGAGAGGAAGACCAGCTCGGCCGAGTCCTCGTCAGCAGAATCAGGCTCAGGTTCTGAGGAAGAAG  880
            |||.||||||||||||||.||||||||.||.|||||.||.||||||||||||||||||||||||||.||.||.|
Sbjct  705  CAGTGACAGCGAGAGGAAAACCAGCTCAGCTGAGTCTTCATCAGCAGAATCAGGCTCAGGTTCTGAAGAGGAGG  778

Query  881  AGGAGGAGGAGGAAGAG---GAGGAGGAGGAAGGGAGCACCAGTGAAGAATCAGAG---GAGGAGGAGGAGGAA  948
            |||||||.||.||||||   ||.||.||.|||||||||||||||||||||||||||   ||.|||||.||.|||
Sbjct  779  AGGAGGAAGAAGAAGAGGAAGAAGAAGAAGAAGGGAGCACCAGTGAAGAATCAGAGGAAGAAGAGGAAGAAGAA  852

Query  949  GAGGAAGAGGAGGAGGAGGAGACCGGCAGCAACTCTGAGGAGGCATCAGAGCAGTCTGCCGAAGAAGTAAGTGA  1022
            |||||.|||||.||.||||||||.||.|||||||||||||||||.||.||.|||||.||.||||||||.|||||
Sbjct  853  GAGGAGGAGGAAGAAGAGGAGACTGGGAGCAACTCTGAGGAGGCCTCTGAACAGTCCGCAGAAGAAGTCAGTGA  926

Query 1023  GGAAGAAATGAGTGAAGATGAAGAACGAGAAAATGAAAACCACCTCTTGGTTGTTCCAGAGTCACGGTTCGACC  1096
            .||.||||||||||||||||||||..|||||||.||.||||||.||||||||||||||||||||||.||.||||
Sbjct  927  TGAGGAAATGAGTGAAGATGAAGACAGAGAAAACGAGAACCACATCTTGGTTGTTCCAGAGTCACGATTTGACC  1000

Query 1097  GAGATTCCGGGGAGAGTGAAGAAGCAGAGGAAGAAGTGGGTGAGGGAACGCCGCAGAGCAGCGCCCTGACAGAG  1170
            |||||||.|||||.||||||||||..|||||||||||.|||||.||.||.||.||||||||.||||..||.||.
Sbjct 1001  GAGATTCTGGGGACAGTGAAGAAGGGGAGGAAGAAGTTGGTGAAGGGACTCCACAGAGCAGTGCCCCCACCGAA  1074

Query 1171  GGCGACTATGTGCCCGACTCCCCTGCCCTGTCGCCCATCGAGCTCAAGCAGGAGCTGCCCAAGTACCTGCCGGC  1244
            ||.||||||||.||.|||||.||.||.|||||.||.||.|||||.||.||.||.||||||||.||||||||.||
Sbjct 1075  GGAGACTATGTTCCTGACTCTCCAGCACTGTCACCTATTGAGCTAAAACAAGAACTGCCCAAATACCTGCCAGC  1148

Query 1245  CCTGCAGGGCTGCCGGAGCGTCGAGGAGTTCCAGTGCCTGAACAGGATCGAGGAGGGCACCTATGGAGTGGTCT  1318
            |||||||||.|||.||||.||.||||||||.|||||.|||||||||||.||.||.|||||||||||.|||||||
Sbjct 1149  CCTGCAGGGATGCAGGAGTGTAGAGGAGTTTCAGTGTCTGAACAGGATTGAAGAAGGCACCTATGGGGTGGTCT  1222

Query 1319  ACAGAGCAAAAGACAAGAAAACAGATGAAATTGTGGCTCTAAAGCGGCTGAAGATGGAGAAGGAGAAGGAGGGC  1392
            ||||||||||.|||||||||||||||||||||||||||||.||||||.|.||||||||||||||||||||.|||
Sbjct 1223  ACAGAGCAAAGGACAAGAAAACAGATGAAATTGTGGCTCTGAAGCGGTTAAAGATGGAGAAGGAGAAGGAAGGC  1296

Query 1393  TTCCCGATCACGTCGCTGAGGGAGATCAACACCATCCTCAAGGCCCAGCATCCCAACATCGTCACCGTTAGAGA  1466
            |||||.|||||||||||||||||.||||||||||||||||||||||||||.|||||||||||||||||.||.||
Sbjct 1297  TTCCCAATCACGTCGCTGAGGGAAATCAACACCATCCTCAAGGCCCAGCACCCCAACATCGTCACCGTCAGGGA  1370

Query 1467  GATTGTGGTGGGCAGCAACATGGACAAGATCTACATCGTGATGAACTATGTGGAGCACGACCTCAAGAGCCTGA  1540
            .|||||.|||||.||.||||||||||||||||||||.|||||||||||.|||||.||.||||||||||||||.|
Sbjct 1371  AATTGTTGTGGGAAGTAACATGGACAAGATCTACATTGTGATGAACTACGTGGAACATGACCTCAAGAGCCTAA  1444

Query 1541  TGGAGACCAGAAAACAGCCCCTTCCTGCCAAGGGGAGGTGAAGACCCCTGAGAATCCAGGTTGGTGCGTGGGGG  1614
            |||||||||..||.||| ||||||||||| |||||||||||||| ||||||..||.|| |.||.||.|| ||||
Sbjct 1445  TGGAGACCATGAAGCAG-CCCTTCCTGCC-AGGGGAGGTGAAGA-CCCTGATGATTCA-GCTGCTGAGT-GGGG  1513

Query 1615  TGAAACACCTCCACGACAAACTGATCCCTGCACCGTGACCTCAAGACGTC-CACCTGGCTGCTGAGCCACGCCG  1687
            |.||.||||||||.|||||...||| |||.|||||||||||.|||||.|| .|||| .|||||||||||.||.|
Sbjct 1514  TAAAGCACCTCCATGACAATTGGAT-CCTACACCGTGACCTGAAGACCTCTAACCT-CCTGCTGAGCCATGCTG  1585

Query 1688  GCATCCTCAAGGTGGGTGACTTCGGGCTGGCGCGGGAGTACGGATCCCCTCTGAAGGCCTACACCCCGGTCGTG  1761
            ||||.|||||||||||.|||||.||||||||.||||||||.||.||.||.||.|||||||||||.||.||.||.
Sbjct 1586  GCATTCTCAAGGTGGGCGACTTTGGGCTGGCTCGGGAGTATGGTTCACCCCTAAAGGCCTACACTCCAGTTGTT  1659

Query 1762  GTGACCCTGTGGTACCGCGCCCCAGAGCTGCTGCTTGGTGCCAAGGAATACTCCACGGCCGTGGACATGTGGTC  1835
            ||.|||||||||||.||.||||||||.||.|||||||||||.||||||||||||||.||.||||||||||||||
Sbjct 1660  GTAACCCTGTGGTATCGTGCCCCAGAACTACTGCTTGGTGCTAAGGAATACTCCACAGCTGTGGACATGTGGTC  1733

Query 1836  AGTGGGTTGCATCTTCGGGGAGCTGCTGACTCAGAAGCCTCTGTTCCCCGGGAAGTCAGAAATCGATCAGATCA  1909
            .||.||.|||||.||.||.||.||||||||.|||||.|||||||||||.|||||||||||.||.||||||||.|
Sbjct 1734  GGTAGGCTGCATATTTGGAGAACTGCTGACACAGAAACCTCTGTTCCCTGGGAAGTCAGATATTGATCAGATTA  1807

Query 1910  ACAAGGTGTTCAAGGATCTGGGGACCCCTAGTGAGAAAATCTGGCCCGGCTACAGCGAGCTCCCAGCAGTCAAG  1983
            |||||.|.||||||||.|||||.||.||||||||||||||||||||.|||||.|..||.||||||||.||||||
Sbjct 1808  ACAAGATTTTCAAGGACCTGGGTACTCCTAGTGAGAAAATCTGGCCTGGCTATAATGACCTCCCAGCCGTCAAG  1881

Query 1984  AAGATGACCTTCAGCGAGCACCCCTACAACAACCTCCGCAAGCGCTTCGGGGCTCTGCTCTCAGACCAGGGCTT  2057
            ||||||||||||||||||.|.|||||.|||||||||||||||.|.||.||||||.||.|.|||||.||.|||||
Sbjct 1882  AAGATGACCTTCAGCGAGTATCCCTATAACAACCTCCGCAAGAGATTTGGGGCTTTGTTATCAGATCAAGGCTT  1955

Query 2058  CGACCTCATGAACAAGTTCCTGACCTACTTCCCCGGGAGGAGGATCAGCGCTGAGGACGGCCTCAAGCATGAGT  2131
            .||.||||||||||||||||||||.||||.|||.||.||||||||||.|||.||.||.|||||||||||.||.|
Sbjct 1956  TGATCTCATGAACAAGTTCCTGACATACTACCCTGGCAGGAGGATCAACGCAGAAGATGGCCTCAAGCACGAAT  2029

Query 2132  ATTTCCGCGAGACCCCCCTCCCCATCGACCCCTCCATGTTCCCCACGTGGCCCGCCAAGAGCGAGCAGCAGCGT  2205
            |||||||.|||||.|||||||||||||||||.||||||||||||||||||||.||||||||.|||||||||.|.
Sbjct 2030  ATTTCCGAGAGACTCCCCTCCCCATCGACCCATCCATGTTCCCCACGTGGCCTGCCAAGAGTGAGCAGCAGAGA  2103

Query 2206  GTGAAGCGGGGCACCAGCCCGAGGCCCCCTGAGGGAGGCCTGGGCTACAGCCAGCTGGGTGACGACGACCTGAA  2279
            ||||||||.|||||.||.||..||||.||||||||.||||||||||||||||||||||||||.||.||||||||
Sbjct 2104  GTGAAGCGAGGCACGAGTCCACGGCCTCCTGAGGGCGGCCTGGGCTACAGCCAGCTGGGTGATGATGACCTGAA  2177

Query 2280  GGAGACGGGCTTCCACCTTACCACCACGAACCAGGGGGCCTCTGCCGCGGGCCCCGGCTTCAGCCTCAAGTTC  2352
            ||||||||||||||||||.||||||||.||||||||.|||||.||.||.|||||.||||||||||||||||||
Sbjct 2178  GGAGACGGGCTTCCACCTCACCACCACCAACCAGGGAGCCTCAGCTGCAGGCCCTGGCTTCAGCCTCAAGTTC  2250