Construct: ORF ccsbBroad304_14570
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018898.1_s304c1, BRDN0000459382
- Derived from:
- ccsbBroadEn_14570
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- CDK11B (984)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14570
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033486.3 | 99.1% | 66.1% | (many diffs) |
| 2 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002925.2 | 97.9% | 65.3% | (many diffs) |
| 3 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_024011.4 | 97.8% | 65.2% | (many diffs) |
| 4 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_001291345.2 | 97.8% | 64.8% | (many diffs) |
| 5 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_001787.3 | 97.5% | 65% | (many diffs) |
| 6 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002926.2 | 96.7% | 64% | (many diffs) |
| 7 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_033529.4 | 96.6% | 64% | (many diffs) |
| 8 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542490.3 | 96.4% | 64.3% | (many diffs) |
| 9 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542491.2 | 96.4% | 64.3% | (many diffs) |
| 10 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542492.2 | 96.4% | 64.3% | (many diffs) |
| 11 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_006711065.4 | 96.3% | 63.7% | (many diffs) |
| 12 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_001313982.2 | 95.5% | 63.3% | (many diffs) |
| 13 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542493.3 | 95.2% | 63% | (many diffs) |
| 14 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NM_001313896.2 | 95.1% | 63% | (many diffs) |
| 15 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033489.3 | 94.4% | 61.3% | (many diffs) |
| 16 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002928.2 | 93% | 60.3% | (many diffs) |
| 17 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542494.3 | 91.9% | 59.7% | (many diffs) |
| 18 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_017002927.2 | 91.9% | 59.7% | (many diffs) |
| 19 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_024451174.1 | 91.9% | 59.7% | (many diffs) |
| 20 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_011542495.3 | 90.7% | 58.4% | (many diffs) |
| 21 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NR_132739.2 | 73% | (many diffs) | |
| 22 | human | 728642 | CDK11A | cyclin dependent kinase 11A | NR_132740.2 | 72.1% | (many diffs) | |
| 23 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033490.3 | 71.5% | 38.3% | (many diffs) |
| 24 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_024451184.1 | 70.4% | 37.7% | (many diffs) |
| 25 | human | 984 | CDK11B | cyclin dependent kinase 11B | NM_033487.3 | 66.6% | 33.8% | (many diffs) |
| 26 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958171.1 | 61.4% | (many diffs) | |
| 27 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958173.1 | 61.4% | (many diffs) | |
| 28 | human | 984 | CDK11B | cyclin dependent kinase 11B | XM_024451190.1 | 50.2% | 14.3% | (many diffs) |
| 29 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958172.1 | 47.1% | (many diffs) | |
| 30 | human | 984 | CDK11B | cyclin dependent kinase 11B | XR_002958174.1 | 47.1% | (many diffs) | |
| 31 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | NM_007661.3 | 86.5% | 64% | (many diffs) |
| 32 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_011250179.2 | 86.5% | 64% | (many diffs) |
| 33 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_006538508.2 | 86.4% | 63.9% | (many diffs) |
| 34 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319929.1 | 86.4% | 63.9% | (many diffs) |
| 35 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | NM_001347308.1 | 81.8% | 59.3% | (many diffs) |
| 36 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_006538511.2 | 81.8% | 59.3% | (many diffs) |
| 37 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319930.1 | 81.8% | 59.3% | (many diffs) |
| 38 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319931.1 | 81.7% | 59.1% | (many diffs) |
| 39 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XR_001784083.1 | 75.6% | (many diffs) | |
| 40 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XR_001784084.1 | 74.9% | (many diffs) | |
| 41 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_006538512.3 | 61.4% | 36.4% | (many diffs) |
| 42 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319932.1 | 61.4% | 36.4% | (many diffs) |
| 43 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319933.1 | 48.3% | 22.1% | (many diffs) |
| 44 | mouse | 12537 | Cdk11b | cyclin-dependent kinase 11B | XM_017319934.1 | 48.3% | 22.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1647
- ORF length:
- 1578
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gggtgatgaa aaggactctt ggaaagtgaa aactttagat gaaattcttc 121 aggaaaagaa acgaaggaag gaacaagagg agaaagcaga gataaaacgc ttaaaaaatt 181 ctgatgaccg ggattccaag cgggattccc ttgaggaggg ggagctgaga gatcaccgca 241 tggagatcac aataaggaac tccccgtata gaagagaaga ctctatggaa gacagaggag 301 aagaagatga ttctttggcc atcaaaccac cccagcaaat gtctcggaaa gaaaaagctc 361 atcacagaaa agatgaaaag agaaaagaga aacgtaggca tcgtagccat tcagcagaag 421 gggggaagca tgctagagtg aaagaaaaag aaagagagca cgaacgtcgg aaacggcatc 481 gagaagaaca ggataaagct cgccgggaat gggaaagaca gaagagaagg gagatggcaa 541 gggagcattc caggagagaa agggaccgct tggagcagtt agaaaggaag cgggagcggg 601 agcgcaagat gcgggagcag cagaaggagc agcgggagca gaaggagcgc gagcggcggg 661 cggaggagcg gcgcaaggag cgggaggccc gcagggaagt gtctgcacat caccgaacga 721 tgagagagga ctacagcgac aaagtgaaag ccagccactg gagtcgcagc ccgcctcggc 781 cgccgcggga gcggttcgag ttgggagacg gccgggaagc cagtaaaaga gagaaaatgg 841 aagaaaggga cctgctgtcc gacttacagg acatcagcga cagcgagagg aagaccagct 901 cggccgagtc ctcgtcagca gaatcaggct caggttctga ggaagaagag gaggaggagg 961 aagaggagga ggaggaaggg agcaccagtg aagaatcaga ggaggaggag gaggaagagg 1021 aagaggagga ggaggagacc ggcagcaact ctgaggaggc atcagagcag tctgccgaag 1081 aagtaagtga ggaagaaatg agtgaagatg aagaacgaga aaatgaaaac cacctcttgg 1141 ttgttccaga gtcacggttc gaccgagatt ccggggagag tgaagaagca gaggaagaag 1201 tgggtgaggg aacgccgcag agcagcgccc tgacagaggg cgactatgtg cccgactccc 1261 ctgccctgtc gcccatcgag ctcaagcagg agctgcccaa gtacctgccg gccctgcagg 1321 gctgccggag cgtcgaggag ttccagtgcc tgaacaggat cgaggagggc acctatggag 1381 tggtctacag agcaaaagac aagaaaacag atgaaattgt ggctctaaag cggctgaaga 1441 tggagaagga gaaggagggc ttcccgatca cgtcgctgag ggagatcaac accatcctca 1501 aggcccagca tcccaacatc gtcaccgtta gagagattgt ggtgggcagc aacatggaca 1561 agatctacat cgtgatgaac tatgtggagc acgacctcaa gagcctgatg gagaccagaa 1621 aacagcccct tcctgccaag gggaggtgaa gacccctgag aatccaggtt ggtgcgtggg 1681 ggtgaaacac ctccacgaca aactgatccc tgcaccgtga cctcaagacg tccacctggc 1741 tgctgagcca cgccggcatc ctcaaggtgg gtgacttcgg gctggcgcgg gagtacggat 1801 cccctctgaa ggcctacacc ccggtcgtgg tgaccctgtg gtaccgcgcc ccagagctgc 1861 tgcttggtgc caaggaatac tccacggccg tggacatgtg gtcagtgggt tgcatcttcg 1921 gggagctgct gactcagaag cctctgttcc ccgggaagtc agaaatcgat cagatcaaca 1981 aggtgttcaa ggatctgggg acccctagtg agaaaatctg gcccggctac agcgagctcc 2041 cagcagtcaa gaagatgacc ttcagcgagc acccctacaa caacctccgc aagcgcttcg 2101 gggctctgct ctcagaccag ggcttcgacc tcatgaacaa gttcctgacc tacttccccg 2161 ggaggaggat cagcgctgag gacggcctca agcatgagta tttccgcgag acccccctcc 2221 ccatcgaccc ctccatgttc cccacgtggc ccgccaagag cgagcagcag cgtgtgaagc 2281 ggggcaccag cccgaggccc cctgagggag gcctgggcta cagccagctg ggtgacgacg 2341 acctgaagga gacgggcttc caccttacca ccacgaacca gggggcctct gccgcgggcc 2401 ccggcttcag cctcaagttc ttgccaactt tcttgtacaa agtggttggt aagcctatcc 2461 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 2521 ttaagtcgac aatcaacctc tggatta