Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14570
• Subject: NR_132740.2
• Aligned Length: 3037
• Identities: 2191
• Gaps: 815

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  ATATCATCATTAGGCGTCAACACAGGAAGTGAGGATACTTCTGGCGAGCGCCGGTTGCTGTTTCTTCTCAGGCT  74

Query    1  ---------------------------------------ATGGGTGATGAAAAGGACTCTTGGAAAGTGAAAAC  35
                                                   |||||||||||||||||||||||||||||||||||
Sbjct   75  CAGGGACCGGCCGCGGCCCCGTAGGGTGTTTTAACTCAAATGGGTGATGAAAAGGACTCTTGGAAAGTGAAAAC  148

Query   36  TTTAGATGAAATTCTTCAGGAAAAGAAACGAAGGAAGGAACAAGAGGAGAAAGCAGAGATAAAACGCTTAAAAA  109
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TTTAGATGAAATTCTTCAGGAAAAGAAACGAAGGAAGGAACAAGAGGAGAAAGCAGAGATAAAACGCTTAAAAA  222

Query  110  ATTCTGATGACCGGGATTCCAAGCGGGATTCCCTTGAGGAGGGGGAGCTGAGAGATCACCGCATGGAGATCACA  183
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct  223  ATTCTGATGACCGGGATTCCAAGCGGGATTCCCTTGAGGAGGGGGAGCTGAGAGATCACTGCATGGAGATCACA  296

Query  184  ATAAGGAACTCCCCGTATAGAAGAGAAGACTCTATGGAAGACAGAGGAGAAGAAGATGATTCTTTGGCCATCAA  257
            ||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct  297  ATAAGGAACTCCCCGTATAGAAGAGAAGACTCAATGGAAGACAGAGGAGAAGAAGATGATTCTTTGGCCATCAA  370

Query  258  ACCACCCCAGCAAATGTCTCGGAAAGAAAAAGCTCATCACAGAAAAGATGAAAAGAGAAAAGAGAAACGTAGGC  331
            ||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||.|||.||||||
Sbjct  371  ACCACCCCAGCAAATGTCTCGGAAAGAAAAAGTTCATCACAGAAAAGATGAAAAGAGAAAAGAAAAATGTAGGC  444

Query  332  ATCGTAGCCATTCAGCAGAAGGGGGGAAGCATGCTAGAGTGAAAGAAAAAGAAAGAGAGCACGAACGTCGGAAA  405
            |||.|||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||
Sbjct  445  ATCATAGCCATTCAGCAGAAGGGGGGAAGCATGCTAGAGTG------AAAGAAAGAGAGCACGAACGTCGGAAA  512

Query  406  CGGCATCGAGAAGAACAGGATAAAGCTCGCCGGGAATGGGAAAGACAGAAGAGAAGGGAGATGGCAAGGGAGCA  479
            ||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||
Sbjct  513  CGACATCGAGAAGAACAGGATAAAGCTCGCCGGGAATGGGAAAGACAGAAGAGAAGGGAAATGGCAAGGGAGCA  586

Query  480  TTCCAGGAGAGAAAGGGACCGCTTGGAGCAGTTAGAAAGGAAGCGGGAGCGGGAGCGCAAGATGCGGGAGCAGC  553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  587  TTCCAGGAGAGAAAGGGACCGCTTGGAGCAGTTAGAAAGGAAGCGGGAGCGGGAGCGCAAGATGCGGGAGCAGC  660

Query  554  AGAAGGAGCAGCGGGAGCAGAAGGAGCGCGAGCGGCGGGCGGAGGAGCGGCGCAAGGAGCGGGAGGCCCGCAGG  627
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  661  AGAAGGAGCAGCGGGAGCAGAAGGAGCGCGAGCGGCGGGCGGAGGAGCGGCGCAAGGAGCGGGAGGCCCGCAGG  734

Query  628  GAAGTGTCTGCACATCACCGAACGATGAGAGAGGACTACAGCGACAAAGTGAAAGCCAGCCACTGGAGTCGCAG  701
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  735  GAAGTGTCTGCACATCACCGAACGATGAGAGAGGACTACAGCGACAAAGTGAAAGCCAGCCACTGGAGTCGCAG  808

Query  702  CCCGCCTCGGCCGCCGCGGGAGCGGTTCGAGTTGGGAGACGGCCGG----------------------------  747
            ||||||||||||||||||||||||||||||||||||||||||||||                            
Sbjct  809  CCCGCCTCGGCCGCCGCGGGAGCGGTTCGAGTTGGGAGACGGCCGGAAGCCAGGTGAGGCCAGGCCGGCGCCTG  882

Query  748  ----GAAGCCAG------TAAAAG-AGAGAAAATGGAAGAAAGGGACCTGCTGTCCGACTTACAGGACATCAGC  810
                ||||||||      |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  883  CGCAGAAGCCAGCACAGTTAAAAGAAGAGAAAATGGAAGAAAGGGACCTGCTGTCCGACTTACAGGACATCAGC  956

Query  811  GACAGCGAGAGGAAGACCAGCTCGGCCGAGTCCTCGTCAGCAGAATCAGGCTCAGGTTCTGAGGAAGAAGAGGA  884
            |||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||
Sbjct  957  GACAGCGAGAGGAAGACCAGCTCGGCCGAGTCCTCGTCAGCGGAATCAGGCTCAGGTTCTGAGGAAGAAGAGGA  1030

Query  885  GGAGGAGGAAGAGGAGGAGGAGGAAGGGAGCACCAGTGAAGAATCAGAGGAGGAGGAGGAGGAAGAGGAAGAGG  958
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1031  GGAGGAGGAAGAGGAGGAGGAGGAAGGGAGCACCAGTGAAGAATCAGAGGAGGAGGAGGAGGAAGAGGAAGAGG  1104

Query  959  AGGAGGAGGAGACCGGCAGCAACTCTGAGGAGGCATCAGAGCAGTCTGCCGAAGAAGTAAGTGAGGAAGAAATG  1032
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1105  AGGAGGAGGAGACCGGCAGCAACTCTGAGGAGGCATCAGAGCAGTCTGCCGAAGAAGTAAGTGAGGAAGAAATG  1178

Query 1033  AGTGAAGATGAAGAACGAGAAAATGAAAACCACCTCTTGGTTGTTCCAGAGTCACGGTTCGACCGAGATTCCGG  1106
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179  AGTGAAGATGAAGAACGAGAAAATGAAAACCACCTCTTGGTTGTTCCAGAGTCACGGTTCGACCGAGATTCCGG  1252

Query 1107  GGAGAGTGAAGAAGCAGAGGAAGAAGTGGGTGAGGGAACGCCGCAGAGCAGCGCCCTGACAGAGGGCGACTATG  1180
            ||||||||||||||||||||||||||||                                              
Sbjct 1253  GGAGAGTGAAGAAGCAGAGGAAGAAGTG----------------------------------------------  1280

Query 1181  TGCCCGACTCCCCTGCCCTGTCGCCCATCGAGCTCAAGCAGGAGCTGCCCAAGTACCTGCCGGCCCTGCAGGGC  1254
                                                                                  ||||
Sbjct 1281  ----------------------------------------------------------------------GGGC  1284

Query 1255  TGCCGGAGCGTCGAGGAGTTCCAGTGCCTGAACAGGATCGAGGAGGGCACCTATGGAGTGGTCTACAGAGCAAA  1328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1285  TGCCGGAGCGTCGAGGAGTTCCAGTGCCTGAACAGGATCGAGGAGGGCACCTATGGAGTGGTCTACAGAGCAAA  1358

Query 1329  AGACAAGAAAACAGATGAAATTGTGGCTCTAAAGCGGCTGAAGATGGAGAAGGAGAAGGAGGGCTTCCCGATCA  1402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359  AGACAAGAAAACAGATGAAATTGTGGCTCTAAAGCGGCTGAAGATGGAGAAGGAGAAGGAGGGCTTCCCGATCA  1432

Query 1403  CGTCGCTGAGGGAGATCAACACCATCCTCAAGGCCCAGCATCCCAACATCGTCACCGTTAGAGAGATTGTGGTG  1476
            ||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||
Sbjct 1433  CGTCCCTGAGGGAGATCAACACCATCCTCAAGGCCCAGCATCCCAACATTGTCACCGTTAGAGAGATTGTGGTG  1506

Query 1477  GGCAGCAACATGGACAAGATCTACATCGTGATGAACTATGTGGAGCACGACCTCAAGAGCCTGATGGAGACCAG  1550
            ||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||.
Sbjct 1507  GGCAGCAACATGGACAAGATCTACATCGTGATGAACTACGTGGAGCACGACCTCAAGAGCCTGATGGAGACCAT  1580

Query 1551  AAAACAGCCCCTTCCTGCCAAGGGGAGGTGAAGACCCCTGAGAATCCAGGTTGGTGCGTGGGGGTGAAACACCT  1624
            .|||||| ||||||||||| |||||||||||||| ||||||..||||| |.||.|||| |||||||||||||||
Sbjct 1581  GAAACAG-CCCTTCCTGCC-AGGGGAGGTGAAGA-CCCTGATGATCCA-GCTGCTGCG-GGGGGTGAAACACCT  1649

Query 1625  CCACGACAAACT-GATCCCTGCACCGTGACCTCAAGACGTCC-ACCTGGCTGCTGAGCCACGCCGGCATCCTCA  1696
            .|||||| |||| ||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 1650  GCACGAC-AACTGGAT-CCTGCACCGTGACCTCAAGACGTCCAACCT-GCTGCTGAGCCACGCCGGCATCCTCA  1720

Query 1697  AGGTGGGTGACTTCGGGCTGGCGCGGGAGTACGGATCCCCTCTGAAGGCCTACACCCCGGTCGTGGTGACCCTG  1770
            ||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 1721  AGGTGGGTGATTTTGGGCTGGCGCGGGAGTACGGATCCCCTCTGAAGGCCTACACCCCGGTCGTGGTGACCCAG  1794

Query 1771  TGGTACCGCGCCCCAGAGCTGCTGCTTGGTGCCAAGGAATACTCCACGGCCGTGGACATGTGGTCAGTGGGTTG  1844
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1795  TGGTACCGCGCCCCAGAGCTGCTGCTTGGTGCCAAGGAATACTCCACGGCCGTGGACATGTGGTCAGTGGGCTG  1868

Query 1845  CATCTTCGGGGAGCTGCTGACTCAGAAGCCTCTGTTCCCCGGGAAGTCAGAAATCGATCAGATCAACAAGGTGT  1918
            |||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||||||.||||
Sbjct 1869  CATCTTCGGGGAGCTGCTGACTCAGAAGCCTCTGTTCCCCGGGAATTCGGAAATCGATCAGATCAACAAAGTGT  1942

Query 1919  TCAAGGATCTGGGGACCCCTAGTGAGAAAATCTGGCCCGGCTACAGCGAGCTCCCAGCAGTCAAGAAGATGACC  1992
            |||||||.|||||||||||.||||||||||||||||||||||||||.||||||||||.||||||.|||||||||
Sbjct 1943  TCAAGGAGCTGGGGACCCCCAGTGAGAAAATCTGGCCCGGCTACAGTGAGCTCCCAGTAGTCAAAAAGATGACC  2016

Query 1993  TTCAGCGAGCACCCCTACAACAACCTCCGCAAGCGCTTCGGGGCTCTGCTCTCAGACCAGGGCTTCGACCTCAT  2066
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2017  TTCAGCGAGCACCCCTACAACAACCTCCGCAAGCGCTTCGGGGCTCTGCTCTCAGACCAGGGCTTCGACCTCAT  2090

Query 2067  GAACAAGTTCCTGACCTACTTCCCCGGGAGGAGGATCAGCGCTGAGGACGGCCTCAAGCATGAGTATTTCCGCG  2140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2091  GAACAAGTTCCTGACCTACTTCCCCGGGAGGAGGATCAGCGCTGAGGACGGCCTCAAGCATGAGTATTTCCGCG  2164

Query 2141  AGACCCCCCTCCCCATCGACCCCTCCATGTTCCCCACGTGGCCCGCCAAGAGCGAGCAGCAGCGTGTGAAGCGG  2214
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2165  AGACCCCCCTCCCCATCGACCCCTCCATGTTCCCCACGTGGCCCGCCAAGAGCGAGCAGCAGCGTGTGAAGCGG  2238

Query 2215  GGCACCAGCCCGAGGCCCCCTGAGGGAGGCCTGGGCTACAGCCAGCTGGGTGACGACGACCTGAAGGAGACGGG  2288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2239  GGCACCAGCCCGAGGCCCCCTGAGGGAGGCCTGGGCTACAGCCAGCTGGGTGACGACGACCTGAAGGAGACGGG  2312

Query 2289  CTTCCACCTTACCACCACGAACCAGGGGGCCTCTGCCGCGGGCCCCGGCTTCAGCCTCAAGTTC----------  2352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct 2313  CTTCCACCTTACCACCACGAACCAGGGGGCCTCTGCCGCGGGCCCCGGCTTCAGCCTCAAGTTCTGAAGGTCAG  2386

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2387  AGTGGACCCCGTCATGGGGAGAACTCAGCCGGGACCACAGGCGTGGCTACTGCGGCTGGAGCTGCGATGAGACT  2460

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2461  CGGAACTCCTCGTCTTACTTTGTGCTCCATGTTTTGTTTTTGTATTTTGGTTTGTAAATTTGTAGAATTAAATC  2534

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2535  ATTTTCCTTGTTGTGGAGGAAAGAGCTGTGTTTTCTCCGTGACTTGCCAGGGCATCTTCGGGTGCCCACGTGGG  2608

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2609  GCAGCACAAACCTCCACACACCCTCTCCCACTCTCGACACGCACGGGGCTGGCTGGGCCGTGATTTGGAAAGGA  2682

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2683  ACTGGTGGGAGCCGGGTGGATTGTTTAATCTTCGGAGCTGGAGACCTGTTTCTGTGTTGGGATGAGCGATGCCC  2756

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2757  TCTTGCCCCAACCCACTCGTCCAGACCAGCCCTGTCCACACAGGCCCCCGGCCCCCAACCCCCAGCCCCAGCTG  2830

Query 2353  --------------------------------------------------------------------------  2352
                                                                                      
Sbjct 2831  TGCCAGCAGACTCGACAGGTTTTTATACAAGGTTGTTGAGTTTTAAAATGTATTAAAATATTCTTCGAGGAAAG  2904

Query 2353  ---  2352
               
Sbjct 2905  CTC  2907