Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14578
• Subject: NM_001300960.2
• Aligned Length: 1566
• Identities: 898
• Gaps: 430

Alignment

Query    1  ATGGACTATGACTTTAAAGTGAAGCTGAGCAGC-GAGCGGGAGCGGGTCGAGGACCTGTTTGAATACGAGGGCT  73
            |||||.|||||.||.||.|.||||||| ||.|| ||||||||||||||.|||||..|||||||.|||||.||.|
Sbjct    1  ATGGATTATGATTTCAAGGCGAAGCTG-GCGGCGGAGCGGGAGCGGGTGGAGGATTTGTTTGAGTACGAAGGGT  73

Query   74  GCAAAGTTGGCCGAGGCACTTATGGTCACGTCTACAAAGCCAAGAGGAAAGATGGGAAGGATGATAAAGACTAT  147
            |||||||.||.||.|||||.||.||||||||||||||.||.|.|.||||||||||.||.|||||.||.||.|||
Sbjct   74  GCAAAGTGGGACGCGGCACCTACGGTCACGTCTACAAGGCGAGGCGGAAAGATGGAAAAGATGAAAAGGAATAT  147

Query  148  GCTTTAAAACAAATAGAAGGAACTGGGATCTCTATGTCGGCATGTAGAGAAATAGCATTACTTCGAGAGCTTAA  221
            ||.||.||.|||||.|||||.||.||.||.||.||||||||.||||||||.||.|||.|..|.|||||..|.||
Sbjct  148  GCATTGAAGCAAATTGAAGGCACAGGAATATCCATGTCGGCTTGTAGAGAGATTGCACTTTTGCGAGAATTGAA  221

Query  222  GCATCCAAACGTCATTTCTCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGTGGCTTCTGTTTGACT  295
            |||.||.||.||.|||.|..|.||.||||||||.||.|||||...|||.||||||||.|||||.||||||||.|
Sbjct  222  GCACCCTAATGTGATTGCATTGCAGAAGGTGTTCCTTTCTCACAGTGACAGGAAGGTATGGCTGCTGTTTGATT  295

Query  296  ATGCTGAACATGACCTCTGGCATATAATCAAGTTTCACAGAGCTTCTAAAGCAAACAAGAAGCCAGTTCAGTTA  369
            ||||.||.||||||.|.||||||||.||.|||||||||.|.||.||.||||||||.||.|||||..|.|||||.
Sbjct  296  ATGCAGAGCATGACTTGTGGCATATTATTAAGTTTCACCGTGCATCAAAAGCAAATAAAAAGCCCATGCAGTTG  369

Query  370  CC----TCGGGGAATGGTGAAGTCACTATTATATCAGATCCTAGATGGTATTCACTACCTGCATGCTAACTGGG  439
            ||    ||    .|||||.||.||..||.|.||.|||||.||.||||||||.||.|||||.|||||.||.||||
Sbjct  370  CCAAGATC----TATGGTTAAATCCTTACTTTACCAGATTCTTGATGGTATCCATTACCTCCATGCAAATTGGG  439

Query  440  TGTTGCACAGAGATTTGAAACCTGCTAATATTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAAATT  513
            ||.|.||||||||.||||||||.||.|||||..||||.|||||.||||||||||||.|.||.|||||.|||||.
Sbjct  440  TGCTTCACAGAGACTTGAAACCAGCAAATATCCTAGTAATGGGAGAAGGTCCTGAGAGGGGGAGAGTCAAAATA  513

Query  514  GCTGACATGGGCTTTGCCCGATTATTTAATTCACCTTTGAAGCCTTTAGCAGATTTGGATCCAGTGGTTGTTAC  587
            |.| |.||||||               |||                                  .||||| ||.
Sbjct  514  GAT-ATATGGGC---------------AAT----------------------------------AGGTTG-TAT  536

Query  588  ATTCTGGTACCGAGCCCCTGAACT----ACTTCTTGGAGCAAGGCATTATACCAAAGCTATTGATATTTGGGCT  657
            ||| ||           |||||.|    |||||  ||                 ||.||||     |||...||
Sbjct  537  ATT-TG-----------CTGAATTGTTGACTTC--GG-----------------AACCTAT-----TTTTCACT  574

Query  658  CTCGACAGCATACAG-CATGAATGCTAACGCTAATGGACTCAC-GTCGACATGCCGTCGCAAGGCATCAACTAG  729
            .|||.|||.|   || .||.||    |||    |.|.|.||.| .||..||||            ||||||| |
Sbjct  575  GTCGTCAGGA---AGATATAAA----AAC----AAGCAATCCCTTTCATCATG------------ATCAACT-G  624

Query  730  TATC---TATACATGACAGCTGACGAATCAGT---ATGG---ATTCTGCA------------GTAGATGTAGAT  782
            .|||   |||                 |.|||   ||||   .|.|||||            |.||||    ||
Sbjct  625  GATCGGATAT-----------------TTAGTGTCATGGGGTTTCCTGCAGATAAAGACTGGGAAGAT----AT  677

Query  783  TA-AAAGATGCCTGACAT----CACATATGAGA-----TTCAG-AGAA-TACGTATACCAACTGCAGCCT-ATC  843
            || |||||||||.|| ||    ||||..|.|.|     ||.|| |||| .||||||.|||||.|.||||| ||.
Sbjct  678  TAGAAAGATGCCAGA-ATATCCCACACTTCAAAAAGACTTTAGAAGAACAACGTATGCCAACAGTAGCCTCATA  750

Query  844  AAGTATATG--AAAACATAAAGTTAA-CCAGATAGTAAAGCATT-CACTTGC-TCAGAAGCTGCTTACCAT-GA  911
            |||||.|||  .|||||.||.||.|| ||.||.||.||||..|| |.||||| ||||||.||.||.||||| ||
Sbjct  751  AAGTACATGGAGAAACACAAGGTCAAGCCTGACAGCAAAGTGTTCCTCTTGCTTCAGAAACTCCTGACCATGGA  824

Query  912  CCCAATAAAGCGAA-TACCTC--AGACAGCTATGCAGGACCCCTATTTCTAG--AGACCATT---CTACATCAG  977
            .||||..|||.||| ||||||  ||..||||.|||||||.||||||||..||  .||||.||   |.||||.||
Sbjct  825  TCCAACCAAGAGAATTACCTCGGAGCAAGCTCTGCAGGATCCCTATTTTCAGGAGGACCCTTTGCCAACATTAG  898

Query  978  ACGTTTTTGCCGG-TGTCAAAT--CCTTCCCAAAACGGGAATT--TTACCGAAGAGGA-CCTGATGGCAAAGG-  1044
            |.||.|||||||| ||.||.||  |.|.|||.|||||.|||||  |||..|||||.|| |||||.|..||||| 
Sbjct  899  ATGTATTTGCCGGCTGCCAGATTCCATACCCCAAACGAGAATTCCTTAATGAAGATGATCCTGAAGAAAAAGGT  972

Query 1045  GACCA-AAACAGGCGCCACAGGAAGGCCATTACCAACATAA-----------------------AGG-------  1087
            |||.| ||.||   ||.||||.|   .||..||||.|||.|                       |||       
Sbjct  973  GACAAGAATCA---GCAACAGCA---GCAGAACCAGCATCAGCAGCCCACAGCCCCTCCACAGCAGGCAGCAGC  1040

Query 1088  -----AACTGGCCCCCC----------------------------CGGGAATCCA-----------GGCCGCCG  1117
                 .||.|||.||||                            |||||...||           |||||..|
Sbjct 1041  CCCTCCACAGGCGCCCCCACCACAGCAGAACAGCACCCAGACCAACGGGACCGCAGGTGGGGCTGGGGCCGGGG  1114

Query 1118  TTCCCCCCCGGGGCCCCCGGTGAAGG------------------------------------------AAATGA  1149
            |       |||||.|.||||.|.|||                                          |||..|
Sbjct 1115  T-------CGGGGGCACCGGAGCAGGGTTGCAGCACAGCCAGGACTCCAGCCTGAACCAGGTGCCTCCAAACAA  1181

Query 1150  GAAGTGTTCC---------TCCTT----CCCATACCTTCGGGGGGA-CTATCCAGGCCTTCGGCCATTAGGGGT  1209
            ||||    ||         .||||    |.||.||  ||.||.||| ||.| .|.|||.||||  ||||     
Sbjct 1182  GAAG----CCACGGCTAGGGCCTTCAGGCGCAAAC--TCAGGTGGACCTGT-GATGCCCTCGG--ATTA-----  1241

Query 1210  TC--CATTCCCCTGC-CGCCT--ATTCCCA--------------------------CCCCGGGCCCA----GC-  1247
            ||  ||.|||..|.| |||||  |||.|||                          |||.|.||.||    || 
Sbjct 1242  TCAGCACTCCAGTTCTCGCCTGAATTACCAAAGCAGCGTTCAGGGATCCTCTCAGTCCCAGAGCACACTTGGCT  1315

Query 1248  -CCCTTCC----CACCGCAGAGCCGCCAGGGATAATTCAGTACCTTCCCACCGCCTTCCCCAGACTCCCCTTCG  1316
             |.|||||    |.|.|||||||  .||         ||||||| .||||.|    ||.|||           |
Sbjct 1316  ACTCTTCCTCGTCTCAGCAGAGC--TCA---------CAGTACC-ACCCATC----TCACCA-----------G  1362

Query 1317  GCCCATTGGGAA  1328
            |||||..||.|.
Sbjct 1363  GCCCACCGGTAC  1374