Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14578
- Subject:
- NM_001300964.2
- Aligned Length:
- 1585
- Identities:
- 843
- Gaps:
- 516
Alignment
Query 1 ATGGACTATGACTTTAAAGTGAAGCTGAGCAGCGAGCGGGAGCGGGTCGAGGACCTGTTTGAATACGAGGGCTG 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 CAAAGTTGGCCGAGGCACTTATGGTCACGTCTACAAAGCCAAGAGGAAAGATGGGAAGGATGATAAAGACTATG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CTTTAAAACAAATAGAAGGAACTGGGATCTCTATGTCGGCATGTAGAGAAATAGCATTACTTCGAGAGCTTAAG 222
||||||||.||||||||.||.|||.|..|.|||||..|.|||
Sbjct 1 --------------------------------ATGTCGGCTTGTAGAGAGATTGCACTTTTGCGAGAATTGAAG 42
Query 223 CATCCAAACGTCATTTCTCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGTGGCTTCTGTTTGACTA 296
||.||.||.||.|||.|..|.||.||||||||.||.|||||...|||.||||||||.|||||.||||||||.||
Sbjct 43 CACCCTAATGTGATTGCATTGCAGAAGGTGTTCCTTTCTCACAGTGACAGGAAGGTATGGCTGCTGTTTGATTA 116
Query 297 TGCTGAACATGACCTCTGGCATATAATCAAGTTTCACAGAGCTTCTAAAGCAAACAAGAAGCCAGTTCAGTTAC 370
|||.||.||||||.|.||||||||.||.|||||||||.|.||.||.||||||||.||.|||||..|.|||||.|
Sbjct 117 TGCAGAGCATGACTTGTGGCATATTATTAAGTTTCACCGTGCATCAAAAGCAAATAAAAAGCCCATGCAGTTGC 190
Query 371 C----TCGGGGAATGGTGAAGTCACTATTATATCAGATCCTAGATGGTATTCACTACCTGCATGCTAACTGGGT 440
| || .|||||.||.||..||.|.||.|||||.||.||||||||.||.|||||.|||||.||.|||||
Sbjct 191 CAAGATC----TATGGTTAAATCCTTACTTTACCAGATTCTTGATGGTATCCATTACCTCCATGCAAATTGGGT 260
Query 441 GTTGCACAGAGATTTGAAACCTGCTAATATTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAAATTG 514
|.|.||||||||.||||||||.||.|||||..||||.|||||.||||||||||||.|.||.|||||.|||||.|
Sbjct 261 GCTTCACAGAGACTTGAAACCAGCAAATATCCTAGTAATGGGAGAAGGTCCTGAGAGGGGGAGAGTCAAAATAG 334
Query 515 CTGACATGGGCTTTGCCCGATTATTTAATTCACCTTTGAAGCCTTTAGCAGATTTGGATCCAGTGGTTGTTACA 588
||||||||||.||||||.|||||||.|||||.|||.|.|||||..|||||||||||||||||||.|||||.|||
Sbjct 335 CTGACATGGGTTTTGCCAGATTATTCAATTCTCCTCTAAAGCCACTAGCAGATTTGGATCCAGTAGTTGTGACA 408
Query 589 TTCTGGTACCGAGCCCCTGAACTACTTCTTGGAGCAAGGCATTATACCAAAGCTATTGATATTTGGGCTCTCGA 662
||.|||||.||.||.||.|||||..|.|||||.||||||||||||||.||.||.||||||||.|||||..|.|.
Sbjct 409 TTTTGGTATCGGGCTCCAGAACTTTTGCTTGGTGCAAGGCATTATACAAAGGCCATTGATATATGGGCAATAGG 482
Query 663 CAGCATA----CAGCATGAATGCT---------AACGCTAATGGACTCACGTCGACATGCCGTC-GCAAGGCAT 722
..|.||| | |||||..| ||| |||.| ..|||| ||.|||| |.|||..||
Sbjct 483 TTGTATATTTGC----TGAATTGTTGACTTCGGAAC-CTATT--TTTCAC-------TGTCGTCAGGAAGATAT 542
Query 723 --CAACTAG-------TATCTATACATGA-CAGCTG--ACG---AATCAGT---ATGG---ATTCTGCA----- 770
.|||.|| |.|| || ||||| ||.||| .|| |.|.||| |||| .|.|||||
Sbjct 543 AAAAACAAGCAATCCCTTTC-AT-CATGATCAACTGGATCGGATATTTAGTGTCATGGGGTTTCCTGCAGATAA 614
Query 771 -------GTAGATGTAGATTA-AAAGATGCCTGACAT----CACATATGAGA-----TTCAG-AGAA-TACGTA 825
|.|||| |||| |||||||||.|| || ||||..|.|.| ||.|| |||| .|||||
Sbjct 615 AGACTGGGAAGAT----ATTAGAAAGATGCCAGA-ATATCCCACACTTCAAAAAGACTTTAGAAGAACAACGTA 683
Query 826 TACCAACTGCAGCCT-ATCAAGTATATG--AAAACATAAAGTTAA-CCAGATAGTAAAGCATT-CACTTGC-TC 893
|.|||||.|.||||| ||.|||||.||| .|||||.||.||.|| ||.||.||.||||..|| |.||||| ||
Sbjct 684 TGCCAACAGTAGCCTCATAAAGTACATGGAGAAACACAAGGTCAAGCCTGACAGCAAAGTGTTCCTCTTGCTTC 757
Query 894 AGAAGCTGCTTACCAT-GACCCAATAAAGCGAA-TACCTC--AGACAGCTATGCAGGACCCCTATTTCTAG--A 961
||||.||.||.||||| ||.||||..|||.||| |||||| ||..||||.|||||||.||||||||..|| .
Sbjct 758 AGAAACTCCTGACCATGGATCCAACCAAGAGAATTACCTCGGAGCAAGCTCTGCAGGATCCCTATTTTCAGGAG 831
Query 962 GACCATT---CTACATCAGACGTTTTTGCCGG-TGTCAAAT--CCTTCCCAAAACGGGAATT--TTACCGAAGA 1027
||||.|| |.||||.|||.||.|||||||| ||.||.|| |.|.|||.|||||.||||| |||..|||||
Sbjct 832 GACCCTTTGCCAACATTAGATGTATTTGCCGGCTGCCAGATTCCATACCCCAAACGAGAATTCCTTAATGAAGA 905
Query 1028 GGA-CCTGATGGCAAAGG-GACCA-AAACAGGCGCCACAGGAAGGCCATTACCAACATAA-------------- 1084
.|| |||||.|..||||| |||.| ||.|| ||.||||.| .||..||||.|||.|
Sbjct 906 TGATCCTGAAGAAAAAGGTGACAAGAATCA---GCAACAGCA---GCAGAACCAGCATCAGCAGCCCACAGCCC 973
Query 1085 ---------AGG------------AACTGGCCCCCC----------------------------CGGGAATCCA 1109
||| .||.|||.|||| |||||...||
Sbjct 974 CTCCACAGCAGGCAGCAGCCCCTCCACAGGCGCCCCCACCACAGCAGAACAGCACCCAGACCAACGGGACCGCA 1047
Query 1110 -----------GGCCGCCGTTCCCCCCCGGGGCCCCCGGTGAAGG----------------------------- 1143
|||||..|| |||||.|.||||.|.|||
Sbjct 1048 GGTGGGGCTGGGGCCGGGGT-------CGGGGGCACCGGAGCAGGGTTGCAGCACAGCCAGGACTCCAGCCTGA 1114
Query 1144 -------------AAATGAGAAGTGTTCC---------TCCTT----CCCATACCTTCGGGGGGA-CTATCCAG 1190
|||..||||| || .|||| |.||.|| ||.||.||| ||.| .|.
Sbjct 1115 ACCAGGTGCCTCCAAACAAGAAG----CCACGGCTAGGGCCTTCAGGCGCAAAC--TCAGGTGGACCTGT-GAT 1181
Query 1191 GCCTTCGGCCATTAGGGGTTC--CATTCCCCTGC-CGCCT--ATTCCCA------------------------- 1234
|||.|||| |||| || ||.|||..|.| ||||| |||.|||
Sbjct 1182 GCCCTCGG--ATTA-----TCAGCACTCCAGTTCTCGCCTGAATTACCAAAGCAGCGTTCAGGGATCCTCTCAG 1248
Query 1235 -CCCCGGGCCCA----GC--CCCTTCC----CACCGCAGAGCCGCCAGGGATAATTCAGTACCTTCCCACCGCC 1297
|||.|.||.|| || |.||||| |.|.||||||| .|| ||||||| .||||.|
Sbjct 1249 TCCCAGAGCACACTTGGCTACTCTTCCTCGTCTCAGCAGAGC--TCA---------CAGTACC-ACCCATC--- 1307
Query 1298 TTCCCCAGACTCCCCTTCGGCCCATTGGGAA 1328
||.||| ||||||..||.|.
Sbjct 1308 -TCACCA-----------GGCCCACCGGTAC 1326