Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14578
• Subject: NM_001359991.1
• Aligned Length: 1419
• Identities: 965
• Gaps: 313

Alignment

Query    1  ATGGACTATGACTTTAAAGTGAAGCTGAGCAGCGAGCGGGAGCGGGTCGAGGACCTGTTTGAATACGAGGGCTG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CAAAGTTGGCCGAGGCACTTATGGTCACGTCTACAAAGCCAAGAGGAAAGATGGGAAGGATGATAAAGACTATG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CTTTAAAACAAATAGAAGGAACTGGGATCTCTATGTCGGCATGTAGAGAAATAGCATTACTTCGAGAGCTTAAG  222
                                            |||||||||||.|||||.|||||||||||.||||||||||||
Sbjct    1  --------------------------------ATGTCGGCATGCAGAGAGATAGCATTACTCCGAGAGCTTAAG  42

Query  223  CATCCAAACGTCATTTCTCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGTGGCTTCTGTTTGACTA  296
            ||.|||||||||||.||.||||..||||||||||||||||||||||||.||||.||.||||||||.||||||||
Sbjct   43  CACCCAAACGTCATCTCCCTTCTGAAGGTGTTTCTGTCTCATGCTGATCGGAAAGTATGGCTTCTCTTTGACTA  116

Query  297  TGCTGAACATGACCTCTGGCATATAATCAAGTTTCACAGAGCTTCTAAAGCAAACAAGAAGCCAGTTCAGTTAC  370
            ||||||.||||||||||||||||||||.|||||||||||||||||.|||||.||||||||||||||||||||||
Sbjct  117  TGCTGAGCATGACCTCTGGCATATAATTAAGTTTCACAGAGCTTCGAAAGCCAACAAGAAGCCAGTTCAGTTAC  190

Query  371  CTCGGGGAATGGTGAAGTCACTATTATATCAGATCCTAGATGGTATTCACTACCTGCATGCTAACTGGGTGTTG  444
            ||||||||||||||||||||||.||.||.||||||||||||||.||||||||.||.|||||.||||||||||||
Sbjct  191  CTCGGGGAATGGTGAAGTCACTGTTGTACCAGATCCTAGATGGGATTCACTATCTTCATGCCAACTGGGTGTTG  264

Query  445  CACAGAGATTTGAAACCTGCTAATATTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAAATTGCTGA  518
            |||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  265  CACAGGGATTTGAAACCTGCTAATATTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAAATTGCTGA  338

Query  519  CATGGGCTTTGCCCGATTATTTAATTCACCTTTGAAGCCTTTAGCAGATTTGGATCCAGTGGTTGTTACATTCT  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct  339  CATGGGCTTTGCCCGATTATTTAATTCACCTTTGAAGCCTTTAGCAGATTTGGATCCAGTGGTTGTAACATTCT  412

Query  593  GGTACCGAGCCCCTGAACTACTTCTTGGAGCAAGGCATTATACCAAAGCTATTG-----ATATTTGGGCTCTCG  661
            ||||||||||.||.|||.||||.||.|||||..|.||||||||||||||.||||     |||||||        
Sbjct  413  GGTACCGAGCTCCAGAATTACTCCTCGGAGCGCGACATTATACCAAAGCAATTGGGTGTATATTTG--------  478

Query  662  ACAGCATACAGCATGAA-TGCTAACGCTAATGGAC-------TCAC-GTCGACATGCCGTCGCAAGG-CATC--  723
             ||           ||| |.||||||..|  |.||       |||| |||||||.|        ||| ||||  
Sbjct  479  -CA-----------GAACTACTAACGTCA--GAACCAATATTTCACTGTCGACAAG--------AGGACATCAA  530

Query  724  AACTAGT-ATCTATA----CATGA-CAGCT-GAC-GAA---TCAGTAT----GGATT--CTGCAGTAGATGTAG  780
            ||||||| |||..||    ||||| ||||| ||| |||   |||.|.|    |||||  ||||   ||||..||
Sbjct  531  AACTAGTAATCCTTATCACCATGACCAGCTGGACAGAATATTCAATGTAATGGGATTCCCTGC---AGATAAAG  601

Query  781  ATT------------AAAAGATGCCTG-ACAT--CACAT--ATGAGA---TTCAGA--GAATACGTATACCAAC  832
            |||            ||||||||||.| ||||  .||||  ||||.|   ||||||  .||||||||||||||.
Sbjct  602  ATTGGGAAGATATAAAAAAGATGCCCGAACATTCAACATTAATGAAAGATTTCAGAAGAAATACGTATACCAAT  675

Query  833  TGCAGCC-TATCAAGTATATG--AAAACATAAAGTT-AACCAGATAGTAAAGCATT-CACTTGC-TCAGAAGCT  900
            ||||||| |||||||||||||  |||.||||||||| ||||.|||||||||||||| ||||||| |||||||.|
Sbjct  676  TGCAGCCTTATCAAGTATATGGAAAAGCATAAAGTTAAACCCGATAGTAAAGCATTCCACTTGCTTCAGAAGTT  749

Query  901  GCTTACCAT-GACCCAATAAAGCGAA-TACCTCAGA-CA-GCTATGCAGGACCCCTA-TTTCTAG-AGAC---C  965
            |||.||.|| |||||||||||||||| ||||||||| || ||.|||||||||||||| ||.|||| ||||   |
Sbjct  750  GCTCACTATGGACCCAATAAAGCGAATTACCTCAGAGCAGGCCATGCAGGACCCCTACTTCCTAGAAGACCCAC  823

Query  966  ATTCTACATCAGACGTTTTTGCCGG-TGTCAAATCC---TTCCCAAAACGGGAATTTT--ACCGAAGAGGA-CC  1032
            .|.|.||.|||||.|||||.||||| |||||.||||   .|||| |||||.|||||||  ||.|||||.|| ||
Sbjct  824  TTCCCACGTCAGATGTTTTCGCCGGTTGTCAGATCCCATATCCC-AAACGAGAATTTTTAACAGAAGAAGAGCC  896

Query 1033  TGATGGCAAAGG-GACCAAAA----CAGGCGCCACAGGAAGGCCATTACCAACA-TAAAGGAACTGGCCCCCCC  1100
            |||||..||||| |||.||||    |||..||..|||.|.|||.|..||| ||| |||.||||||||||..||.
Sbjct  897  TGATGAGAAAGGAGACAAAAAGACCCAGCAGCAGCAGCAGGGCAACAACC-ACACTAACGGAACTGGCCATCCG  969

Query 1101  GGGAATCCAGG-CCGCCGTTCCCCCCCGGGGCCCCCGGTGAAGGAAATGAGAAGTGTTCCTCCTTCCCATACCT  1173
            ||||| ||||| |.||.|...|.|.|.|||||||||..||||..||.|||||..|||.||||||.||..|||| 
Sbjct  970  GGGAA-CCAGGACAGCGGCCACGCACAGGGGCCCCCCTTGAAAAAAGTGAGAGTTGTCCCTCCTACCACTACC-  1041

Query 1174  TCGGGGGGACT-ATCCAGGCCTTCGGCCATTAGGGGTTCCATTCC-CCTGCCGCCTATTCCCACCCCGGGCCCA  1245
            ||.||.||||| |||..|.|||.||.|.||.| |.||||||.||| |.|||.||.|| |||||.|||.||.|||
Sbjct 1042  TCAGGTGGACTCATCATGACCTCCGACTATCA-GCGTTCCAATCCACATGCTGCTTA-TCCCAACCCTGGACCA  1113

Query 1246  GCCCCTTCCCA-CCGCAGAGCCGCCAGGGATAATTCAG-TACCTTCCCA-CCGCCTTCCCCAG-ACTCCCCTTC  1315
            ..|.|.||.|| ||.||||||.||..||||| |.|||| |||| ||||| |.||| |||.||| ||||.|.|..
Sbjct 1114  AGCACATCACAGCCCCAGAGCAGCATGGGAT-ACTCAGCTACC-TCCCAGCAGCC-TCCACAGTACTCACATCA  1184

Query 1316  GGCCCATTGGGAA  1328
            |.|.|||.||.|.
Sbjct 1185  GACACATCGGTAC  1197