Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14578
• Subject: XM_024446379.1
• Aligned Length: 1585
• Identities: 843
• Gaps: 516

Alignment

Query    1  ATGGACTATGACTTTAAAGTGAAGCTGAGCAGCGAGCGGGAGCGGGTCGAGGACCTGTTTGAATACGAGGGCTG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CAAAGTTGGCCGAGGCACTTATGGTCACGTCTACAAAGCCAAGAGGAAAGATGGGAAGGATGATAAAGACTATG  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  CTTTAAAACAAATAGAAGGAACTGGGATCTCTATGTCGGCATGTAGAGAAATAGCATTACTTCGAGAGCTTAAG  222
                                            ||||||||.||||||||.||.|||.|..|.|||||..|.|||
Sbjct    1  --------------------------------ATGTCGGCTTGTAGAGAGATTGCACTTTTGCGAGAATTGAAG  42

Query  223  CATCCAAACGTCATTTCTCTTCAAAAGGTGTTTCTGTCTCATGCTGATAGGAAGGTGTGGCTTCTGTTTGACTA  296
            ||.||.||.||.|||.|..|.||.||||||||.||.|||||...|||.||||||||.|||||.||||||||.||
Sbjct   43  CACCCTAATGTGATTGCATTGCAGAAGGTGTTCCTTTCTCACAGTGACAGGAAGGTATGGCTGCTGTTTGATTA  116

Query  297  TGCTGAACATGACCTCTGGCATATAATCAAGTTTCACAGAGCTTCTAAAGCAAACAAGAAGCCAGTTCAGTTAC  370
            |||.||.||||||.|.||||||||.||.|||||||||.|.||.||.||||||||.||.|||||..|.|||||.|
Sbjct  117  TGCAGAGCATGACTTGTGGCATATTATTAAGTTTCACCGTGCATCAAAAGCAAATAAAAAGCCCATGCAGTTGC  190

Query  371  C----TCGGGGAATGGTGAAGTCACTATTATATCAGATCCTAGATGGTATTCACTACCTGCATGCTAACTGGGT  440
            |    ||    .|||||.||.||..||.|.||.|||||.||.||||||||.||.|||||.|||||.||.|||||
Sbjct  191  CAAGATC----TATGGTTAAATCCTTACTTTACCAGATTCTTGATGGTATCCATTACCTCCATGCAAATTGGGT  260

Query  441  GTTGCACAGAGATTTGAAACCTGCTAATATTTTAGTTATGGGTGAAGGTCCTGAGCGAGGAAGAGTAAAAATTG  514
            |.|.||||||||.||||||||.||.|||||..||||.|||||.||||||||||||.|.||.|||||.|||||.|
Sbjct  261  GCTTCACAGAGACTTGAAACCAGCAAATATCCTAGTAATGGGAGAAGGTCCTGAGAGGGGGAGAGTCAAAATAG  334

Query  515  CTGACATGGGCTTTGCCCGATTATTTAATTCACCTTTGAAGCCTTTAGCAGATTTGGATCCAGTGGTTGTTACA  588
            ||||||||||.||||||.|||||||.|||||.|||.|.|||||..|||||||||||||||||||.|||||.|||
Sbjct  335  CTGACATGGGTTTTGCCAGATTATTCAATTCTCCTCTAAAGCCACTAGCAGATTTGGATCCAGTAGTTGTGACA  408

Query  589  TTCTGGTACCGAGCCCCTGAACTACTTCTTGGAGCAAGGCATTATACCAAAGCTATTGATATTTGGGCTCTCGA  662
            ||.|||||.||.||.||.|||||..|.|||||.||||||||||||||.||.||.||||||||.|||||..|.|.
Sbjct  409  TTTTGGTATCGGGCTCCAGAACTTTTGCTTGGTGCAAGGCATTATACAAAGGCCATTGATATATGGGCAATAGG  482

Query  663  CAGCATA----CAGCATGAATGCT---------AACGCTAATGGACTCACGTCGACATGCCGTC-GCAAGGCAT  722
            ..|.|||    |    |||||..|         ||| |||.|  ..||||       ||.|||| |.|||..||
Sbjct  483  TTGTATATTTGC----TGAATTGTTGACTTCGGAAC-CTATT--TTTCAC-------TGTCGTCAGGAAGATAT  542

Query  723  --CAACTAG-------TATCTATACATGA-CAGCTG--ACG---AATCAGT---ATGG---ATTCTGCA-----  770
              .|||.||       |.|| || ||||| ||.|||  .||   |.|.|||   ||||   .|.|||||     
Sbjct  543  AAAAACAAGCAATCCCTTTC-AT-CATGATCAACTGGATCGGATATTTAGTGTCATGGGGTTTCCTGCAGATAA  614

Query  771  -------GTAGATGTAGATTA-AAAGATGCCTGACAT----CACATATGAGA-----TTCAG-AGAA-TACGTA  825
                   |.||||    |||| |||||||||.|| ||    ||||..|.|.|     ||.|| |||| .|||||
Sbjct  615  AGACTGGGAAGAT----ATTAGAAAGATGCCAGA-ATATCCCACACTTCAAAAAGACTTTAGAAGAACAACGTA  683

Query  826  TACCAACTGCAGCCT-ATCAAGTATATG--AAAACATAAAGTTAA-CCAGATAGTAAAGCATT-CACTTGC-TC  893
            |.|||||.|.||||| ||.|||||.|||  .|||||.||.||.|| ||.||.||.||||..|| |.||||| ||
Sbjct  684  TGCCAACAGTAGCCTCATAAAGTACATGGAGAAACACAAGGTCAAGCCTGACAGCAAAGTGTTCCTCTTGCTTC  757

Query  894  AGAAGCTGCTTACCAT-GACCCAATAAAGCGAA-TACCTC--AGACAGCTATGCAGGACCCCTATTTCTAG--A  961
            ||||.||.||.||||| ||.||||..|||.||| ||||||  ||..||||.|||||||.||||||||..||  .
Sbjct  758  AGAAACTCCTGACCATGGATCCAACCAAGAGAATTACCTCGGAGCAAGCTCTGCAGGATCCCTATTTTCAGGAG  831

Query  962  GACCATT---CTACATCAGACGTTTTTGCCGG-TGTCAAAT--CCTTCCCAAAACGGGAATT--TTACCGAAGA  1027
            ||||.||   |.||||.|||.||.|||||||| ||.||.||  |.|.|||.|||||.|||||  |||..|||||
Sbjct  832  GACCCTTTGCCAACATTAGATGTATTTGCCGGCTGCCAGATTCCATACCCCAAACGAGAATTCCTTAATGAAGA  905

Query 1028  GGA-CCTGATGGCAAAGG-GACCA-AAACAGGCGCCACAGGAAGGCCATTACCAACATAA--------------  1084
            .|| |||||.|..||||| |||.| ||.||   ||.||||.|   .||..||||.|||.|              
Sbjct  906  TGATCCTGAAGAAAAAGGTGACAAGAATCA---GCAACAGCA---GCAGAACCAGCATCAGCAGCCCACAGCCC  973

Query 1085  ---------AGG------------AACTGGCCCCCC----------------------------CGGGAATCCA  1109
                     |||            .||.|||.||||                            |||||...||
Sbjct  974  CTCCACAGCAGGCAGCAGCCCCTCCACAGGCGCCCCCACCACAGCAGAACAGCACCCAGACCAACGGGACCGCA  1047

Query 1110  -----------GGCCGCCGTTCCCCCCCGGGGCCCCCGGTGAAGG-----------------------------  1143
                       |||||..||       |||||.|.||||.|.|||                             
Sbjct 1048  GGTGGGGCTGGGGCCGGGGT-------CGGGGGCACCGGAGCAGGGTTGCAGCACAGCCAGGACTCCAGCCTGA  1114

Query 1144  -------------AAATGAGAAGTGTTCC---------TCCTT----CCCATACCTTCGGGGGGA-CTATCCAG  1190
                         |||..|||||    ||         .||||    |.||.||  ||.||.||| ||.| .|.
Sbjct 1115  ACCAGGTGCCTCCAAACAAGAAG----CCACGGCTAGGGCCTTCAGGCGCAAAC--TCAGGTGGACCTGT-GAT  1181

Query 1191  GCCTTCGGCCATTAGGGGTTC--CATTCCCCTGC-CGCCT--ATTCCCA-------------------------  1234
            |||.||||  ||||     ||  ||.|||..|.| |||||  |||.|||                         
Sbjct 1182  GCCCTCGG--ATTA-----TCAGCACTCCAGTTCTCGCCTGAATTACCAAAGCAGCGTTCAGGGATCCTCTCAG  1248

Query 1235  -CCCCGGGCCCA----GC--CCCTTCC----CACCGCAGAGCCGCCAGGGATAATTCAGTACCTTCCCACCGCC  1297
             |||.|.||.||    ||  |.|||||    |.|.|||||||  .||         ||||||| .||||.|   
Sbjct 1249  TCCCAGAGCACACTTGGCTACTCTTCCTCGTCTCAGCAGAGC--TCA---------CAGTACC-ACCCATC---  1307

Query 1298  TTCCCCAGACTCCCCTTCGGCCCATTGGGAA  1328
             ||.|||           ||||||..||.|.
Sbjct 1308  -TCACCA-----------GGCCCACCGGTAC  1326