Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14622
- Subject:
- NM_001346941.2
- Aligned Length:
- 3727
- Identities:
- 2424
- Gaps:
- 1120
Alignment
Query 1 ATGCGACCCTCCGGGACGGCCGGGGCAGCGCTCCTGGCGCTGCTGGCTGCGCTCTGCCCGGCGAGTCGGGCTCT 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCGACCCTCCGGGACGGCCGGGGCAGCGCTCCTGGCGCTGCTGGCTGCGCTCTGCCCGGCGAGTCGGGCTCT 74
Query 75 GGAGGAAAAGAAAG-------TTTGCCAAGGCACGAGTAACAAGCTCACG----------------CAGTTGGG 125
|||||||||||||| |.|| ||.|| ||.||||| |.||.|||
Sbjct 75 GGAGGAAAAGAAAGGTAATTATGTG-----------GTGAC-AGATCACGGCTCGTGCGTCCGAGCCTGTGGGG 136
Query 126 C-----ACTTT--------TGAAGATCATTTTCTCAGCCTCCAGAGGATGTTCAATAACTGTGAGGTGGTCCTT 186
| .||.| .||||| |.||.||| |.|.||..||.|| |||.|..||.||||
Sbjct 137 CCGACAGCTATGAGATGGAGGAAGA---------CGGCGTCC---GCAAGTGTAAGAA--GTGCGAAGGGCCTT 196
Query 187 G----------------GGAAT-----TTG--GAAATTA-------------CCTATGTGCAGAGGAATTATGA 224
| ||||| ||| |||.||| |.||..||| .|.||||..|.|
Sbjct 197 GCCGCAAAGTGTGTAACGGAATAGGTATTGGTGAATTTAAAGACTCACTCTCCATAAATGC-TACGAATATTAA 269
Query 225 TCTTTCCTTCTTAAAGAC----CATCCAGGAGGTGGCTGGTTATGTCCTCAT--TGC----------------- 275
.| .|||| |||.|| |.||||..|| |||..||.|||.||| |||
Sbjct 270 AC---ACTTC--AAAAACTGCACCTCCATCAG-----TGGCGATCTCCACATCCTGCCGGTGGCATTTAGGGGT 333
Query 276 ----CCTCAACACAGTGGAGCGAATTCCTTTGGAAAACCTGCAGATCATCAGAGGAAAT--ATGTACTACGAAA 343
|||..||||| .|.|||| |||...|||| ||.|||||.| ||.|.|| ||||
Sbjct 334 GACTCCTTCACACA--------TACTCCT--------CCTCTGGATC--CACAGGAACTGGATATTCT--GAAA 387
Query 344 ATTCCTATGCCTTA---------GCAGTCTTATCTAACTATGATGCAAAT--------------AAAACCGGAC 394
| ||.|| .|||..||.| |||..|| |||||.||||
Sbjct 388 A--------CCGTAAAGGAAATCACAGGGTTTT----------TGCTGATTCAGGCTTGGCCTGAAAACAGGAC 443
Query 395 TGAAGGAGCTGCCCATG-------------AGAAAT-TTA-----CAGGA------AATCCTGCATGG------ 437
|||.|| ||||| |||||| .|| ||||| || |||||
Sbjct 444 ----GGACCT--CCATGCCTTTGAGAACCTAGAAATCATACGCGGCAGGACCAAGCAA-----CATGGTCAGTT 506
Query 438 --CGCCGTGCGGT--TCAGC--------AACAACCCTG----------CCCTGTGCAACGTGGAGAGCATCCAG 489
| .|.|||.|| ||||| ||||.||.|| |||| ||| ||||| ..||
Sbjct 507 TTC-TCTTGCAGTCGTCAGCCTGAACATAACATCCTTGGGATTACGCTCCCT---CAA---GGAGA----TAAG 569
Query 490 TGGCGGGACATAGTCAGCAGTGACTTTCTCA-GCAACA------TGT-CGATGGACTTCCAGAACCACCTGGGC 555
||..|| ||..||||...|.||| |.|||| ||| |.|||.|..| |.||..|.||||
Sbjct 570 TGATGG---------AGATGTGATAATTTCAGGAAACAAAAATTTGTGCTATGCAAAT--ACAATAAACTGG-- 630
Query 556 AGCTGCCAAAAGTGTGATCCAAGCTGTCCCAATGGGAGCTGCTGGGGTGCAGGAGAGGAGAACTGCCAGAAACT 629
||| ||.|||| .|||||.||.| ||| ||||||
Sbjct 631 -------AAA----------AAACTGT----TTGGGACCTCC---GGT------------------CAGAAA-- 660
Query 630 GACCAAAATCATCTGTGCCCAGCAGTGCTCCGGGCGCTGCCGTGGCAAGTCCCCCAGTGACTGCTGCCACAACC 703
||||||||.||..| ||.|||.| |||| ||.|
Sbjct 661 -ACCAAAATTATAAG----CAACAGAG-----------------------------GTGA----------AAAC 690
Query 704 AGTGTGCTGC-AGGCTGCACAGGCCCCCGGGAGAGCGACTGCCTGGTCTGCCGCAAATTCCGAGACGAAGCCAC 776
| ||||| |||| ||||| |||.|||||||| |.|||..
Sbjct 691 A----GCTGCAAGGC--CACAG------------------GCCAGGTCTGCC---------------ATGCCTT 725
Query 777 GTGCAAGGACACCTGCCCCCCACTCATGCTCTACAACCCCACCACGTACCAGATGGATGTGAACCCCGAGGGCA 850
||| ||| ||||||||||
Sbjct 726 GTG-------------------CTC--------------------------------------CCCCGAGGGC- 741
Query 851 AATACAGCTTTGGTGCCACCTGCGTGAAGAAGTGTCCCCGTAATTATGTGGTGACAGATCACGGCTCGTGCGTC 924
||| ||| |||.||
Sbjct 742 -------------TGC--------------------------------TGG-----------GGCCCG------ 753
Query 925 CGAGCCTGTGGGGCCGACAGCTATGAGATGGAGGAAGACGGCGTCCGCACTAGTACGACGTTATAAGGTCGCCC 998
||||| ||| .|||.|||| |.||.| ||
Sbjct 754 -GAGCC-----------CAG---------------GGACTGCGT---CTCTTG-------------------CC 778
Query 999 GGGGGCAGTGTATACGACCATTGGGACGAATCTGTTGTAAATGGTTTCAAAATAGCTGCTCTAATATGGAAATT 1072
|| |||| || |||
Sbjct 779 GG-------------------------------------AATG---TC-----AGC------------------ 789
Query 1073 AAGAGGCCGGGGGGCCTCGGTCTAAGTATAATAAAAACATGATCCGCCGTACAGCGGAGAAAGGGGGGGA---- 1142
.|||||.||| ||| || |.|||.|| |.|.|
Sbjct 790 -CGAGGCAGGG------------------AAT-------------GC------GTGGACAA----GTGCAACCT 821
Query 1143 -CTGGAGGAGTTAGATGGCGGGTAAGGGAGTCGGGGCGGGATAGCT---AGAGCCAGACAGATAAGATACATTG 1212
||||||| ||.| |..||||||||..| .|||.|.|| ||.|| |||||.||
Sbjct 822 TCTGGAGG-GTGA-------GCCAAGGGAGTTTG---TGGAGAACTCTGAGTGC------------ATACAGTG 872
Query 1213 AGAGTTTGGACAATCCACAACTAGAATGCCGTGAAAAAAATGATTTATGTGTGAAATTTGTGATGCTATTGCTT 1286
|||| |.|||.|||| |||.|
Sbjct 873 --------------CCAC--CCAGAGTGCC---------------------------------------TGCCT 891
Query 1287 TATTTGTAACCATTATAAGCTGCAATAAACAAGTTCCTCTCACTCTGTGATATTCATTTCTTTGCAAGTTATAA 1360
.| .||.||.|||| |||| |||
Sbjct 892 CA------------------GGCCATGAACA--------TCAC-CTG--------------------------- 911
Query 1361 ATAGTGAATAATAAGATGACATGAACTACTATACGTACTGCTAGAGATTTTCCAGACTGACTAAAAGGGTCTGA 1434
.|||.| ||| |.|| |||||| || |||
Sbjct 912 -----------------CACAGG---------ACG--------GGGA----CCAGAC-----AA------CTG- 935
Query 1435 GGGATCTCTAGTTA-CCAGAGTCACACAACAGACGGGCACACACTACTAGAAGCACTCAAGGCAAGCTTTATTG 1507
|| ||||.|| .|.|||||| ||||
Sbjct 936 ------------TATCCAGTGT----------------GCCCACTAC-----------------------ATTG 958
Query 1508 A-GGCTTAAGCAGTGGGTTCCCTAGTTAGCCAGAGAGCTCCCAGGCTCAGATCTGGTCTAACCAGAGAGACCCG 1580
| ||| |||.|.|..|.|| |||.||.||.|| ||| |||
Sbjct 959 ACGGC--------------CCCCACTGCGTCA-AGACCTGCCCGG--CAG--------------GAG------- 994
Query 1581 TTTATGTATCGAGCTAGGCACTTAAATACAATATC----TTTGCAATGCGGCAATTCAGTGGTTCGTCCAATCC 1650
|.||| .||| ||.||||.|.| |.||.|| ||.||
Sbjct 995 -TCATG---GGAG-----------AAAACAACACCCTGGTCTGGAA---------------GTACG-------- 1030
Query 1651 ATGTCAGAC-CCGTC--TGTTGCCTTCCTAATAAGGCACGATCGTACCACCTGACTTCCA-CCAATCGGC---- 1716
||||| |||.| ||| ||.||||||| |.||| ||||.|.||
Sbjct 1031 ----CAGACGCCGGCCATGT-----------------------GTGCCACCTG--TGCCATCCAAACTGCACCT 1075
Query 1717 ----ATGCACGGTGCTTTTTCTCTC----CTTGTAAGGCAAGTTG-CTAACTCATCGTTACCATGTTGC--AAG 1779
||||||.|.|| | |||| ||||| || |.|||..||.| || |||
Sbjct 1076 ACGGATGCACTGGGC---------CAGGTCTTG-AAGGC----TGTCCAACGAATGG----------GCCTAAG 1125
Query 1780 ACTACAAGTTTATTGCATAAGACTACATT---AAGCTTGCAGCTCCAGCTTTTGTTCCCGTTAGTGAGGGTAAA 1850
| .|..||..||.|| ||.| |.|.|.|..|| ||..||.|||.|.|.|.|.|||
Sbjct 1126 A--TCCCGTCCATCGC---------CACTGGGATGGTGGGGGC-CCTCCTCTTGCTGCTGGTGGTG-------- 1179
Query 1851 TGCGCGCTGGCGTTTCCGGCCTATTCATGCGAAGGCGCCACATCGTTCGGAAGCGCACGCTGCGGAGGCTGCTG 1924
||.||||.|.| ||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 ---GCCCTGGGGAT--CGGCCTCTTCATGCGAAGGCGCCACATCGTTCGGAAGCGCACGCTGCGGAGGCTGCTG 1248
Query 1925 CAGGAGAGGGAGCTTGTGGAGCCTCTTACACCCAGTGGAGAAGCTCCCAACCAAGCTCTCTTGAGGATCTTGAA 1998
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 CAGGAGAGGGAGCTTGTGGAGCCTCTTACACCCAGTGGAGAAGCTCCCAACCAAGCTCTCTTGAGGATCTTGAA 1322
Query 1999 GGAAACTGAATTCAAAAAGATCAAAGTGCTGGGCTCCGGTGCGTTCGGCACGGTGTATAAGGGACTCTGGATCC 2072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GGAAACTGAATTCAAAAAGATCAAAGTGCTGGGCTCCGGTGCGTTCGGCACGGTGTATAAGGGACTCTGGATCC 1396
Query 2073 CAGAAGGTGAGAAAGTTAAAATTCCCGTCGCTATCAAGGAATTAAGAGAAGCAACATCTCCGAAAGCCAACAAG 2146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1397 CAGAAGGTGAGAAAGTTAAAATTCCCGTCGCTATCAAGGAATTAAGAGAAGCAACATCTCCGAAAGCCAACAAG 1470
Query 2147 GAAATCCTCGATGAAGCCTACGTGATGGCCAGCGTGGACAACCCCCACGTGTGCCGCCTGCTGGGCATCTGCCT 2220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 GAAATCCTCGATGAAGCCTACGTGATGGCCAGCGTGGACAACCCCCACGTGTGCCGCCTGCTGGGCATCTGCCT 1544
Query 2221 CACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAG 2294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 CACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAG 1618
Query 2295 ACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGT 2368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 ACAATATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGT 1692
Query 2369 CGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTT 2442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 CGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTT 1766
Query 2443 TGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTGGA 2516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1767 TGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTGGA 1840
Query 2517 TGGCATTGGAATCAATTTTACACAGAATCTATACCCACCAGAGTGATGTCTGGAGCTACGGGGTGACCGTTTGG 2590
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||
Sbjct 1841 TGGCATTGGAATCAATTTTACACAGAATCTATACCCACCAGAGTGATGTCTGGAGCTACGGGGTGACTGTTTGG 1914
Query 2591 GAGTTGATGACCTTTGGATCCAAGCCATATGACGGAATCCCTGCCAGCGAGATCTCCTCCATCCTGGAGAAAGG 2664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1915 GAGTTGATGACCTTTGGATCCAAGCCATATGACGGAATCCCTGCCAGCGAGATCTCCTCCATCCTGGAGAAAGG 1988
Query 2665 AGAACGCCTCCCTCAGCCACCCATATGTACCATCGATGTCTACATGATCATGGTCAAGTGCTGGATGATAGACG 2738
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1989 AGAACGCCTCCCTCAGCCACCCATATGTACCATCGATGTCTACATGATCATGGTCAAGTGCTGGATGATAGACG 2062
Query 2739 CAGATAGTCGCCCAAAGTTCCGTGAGTTGATCATCGAATTCTCCAAAATGGCCCGAGACCCCCAGCGCTACCTT 2812
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2063 CAGATAGTCGCCCAAAGTTCCGTGAGTTGATCATCGAATTCTCCAAAATGGCCCGAGACCCCCAGCGCTACCTT 2136
Query 2813 GTCATTCAGGGGGATGAAAGAATGCATTTGCCAAGTCCTACAGACTCCAACTTCTACCGTGCCCTGATGGATGA 2886
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2137 GTCATTCAGGGGGATGAAAGAATGCATTTGCCAAGTCCTACAGACTCCAACTTCTACCGTGCCCTGATGGATGA 2210
Query 2887 AGAAGACATGGACGACGTGGTGGATGCCGACGAGTACCTCATCCCACAGCAGGGCTTCTTCAGCAGCCCCTCCA 2960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2211 AGAAGACATGGACGACGTGGTGGATGCCGACGAGTACCTCATCCCACAGCAGGGCTTCTTCAGCAGCCCCTCCA 2284
Query 2961 CGTCACGGACTCCCCTCCTGAGCTCTCTGAGTGCAACCAGCAACAATTCCACCGTGGCTTGCATTGATAGAAAT 3034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2285 CGTCACGGACTCCCCTCCTGAGCTCTCTGAGTGCAACCAGCAACAATTCCACCGTGGCTTGCATTGATAGAAAT 2358
Query 3035 GGGCTGCAAAGCTGTCCCATCAAGGAAGACAGCTTCTTGCAGCGATACAGCTCAGACCCCACAGGCGCCTTGAC 3108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2359 GGGCTGCAAAGCTGTCCCATCAAGGAAGACAGCTTCTTGCAGCGATACAGCTCAGACCCCACAGGCGCCTTGAC 2432
Query 3109 TGAGGACAGCATAGACGACACCTTCCTCCCAGTGCCTGAATACATAAACCAGTCCGTTCCCAAAAGGCCCGCTG 3182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2433 TGAGGACAGCATAGACGACACCTTCCTCCCAGTGCCTGAATACATAAACCAGTCCGTTCCCAAAAGGCCCGCTG 2506
Query 3183 GCTCTGTGCAGAATCCTGTCTATCACAATCAGCCTCTGAACCCCGCGCCCAGCAGAGACCCACACTACCAGGAC 3256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2507 GCTCTGTGCAGAATCCTGTCTATCACAATCAGCCTCTGAACCCCGCGCCCAGCAGAGACCCACACTACCAGGAC 2580
Query 3257 CCCCACAGCACTGCAGTGGGCAACCCCGAGTATCTCAACACTGTCCAGCCCACCTGTGTCAACAGCACATTCGA 3330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2581 CCCCACAGCACTGCAGTGGGCAACCCCGAGTATCTCAACACTGTCCAGCCCACCTGTGTCAACAGCACATTCGA 2654
Query 3331 CAGCCCTGCCCACTGGGCCCAGAAAGGCAGCCACCAAATTAGCCTGGACAACCCTGACTACCAGCAGGACTTCT 3404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2655 CAGCCCTGCCCACTGGGCCCAGAAAGGCAGCCACCAAATTAGCCTGGACAACCCTGACTACCAGCAGGACTTCT 2728
Query 3405 TTCCCAAGGAAGCCAAGCCAAATGGCATCTTTAAGGGCTCCACAGCTGAAAATGCAGAATACCTAAGGGTCGCG 3478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2729 TTCCCAAGGAAGCCAAGCCAAATGGCATCTTTAAGGGCTCCACAGCTGAAAATGCAGAATACCTAAGGGTCGCG 2802
Query 3479 CCACAAAGCAGTGAATTTATTGGAGCA 3505
|||||||||||||||||||||||||||
Sbjct 2803 CCACAAAGCAGTGAATTTATTGGAGCA 2829
