Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14622
- Subject:
- NM_201283.1
- Aligned Length:
- 3556
- Identities:
- 1123
- Gaps:
- 2392
Alignment
Query 1 ATGCGACCCTCCGGGACGGCCGGGGCAGCGCTCCTGGCGCTGCTGGCTGCGCTCTGCCCGGCGAGTCGGGCTCT 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCGACCCTCCGGGACGGCCGGGGCAGCGCTCCTGGCGCTGCTGGCTGCGCTCTGCCCGGCGAGTCGGGCTCT 74
Query 75 GGAGGAAAAGAAAGTTTGCCAAGGCACGAGTAACAAGCTCACGCAGTTGGGCACTTTTGAAGATCATTTTCTCA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GGAGGAAAAGAAAGTTTGCCAAGGCACGAGTAACAAGCTCACGCAGTTGGGCACTTTTGAAGATCATTTTCTCA 148
Query 149 GCCTCCAGAGGATGTTCAATAACTGTGAGGTGGTCCTTGGGAATTTGGAAATTACCTATGTGCAGAGGAATTAT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCCTCCAGAGGATGTTCAATAACTGTGAGGTGGTCCTTGGGAATTTGGAAATTACCTATGTGCAGAGGAATTAT 222
Query 223 GATCTTTCCTTCTTAAAGACCATCCAGGAGGTGGCTGGTTATGTCCTCATTGCCCTCAACACAGTGGAGCGAAT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GATCTTTCCTTCTTAAAGACCATCCAGGAGGTGGCTGGTTATGTCCTCATTGCCCTCAACACAGTGGAGCGAAT 296
Query 297 TCCTTTGGAAAACCTGCAGATCATCAGAGGAAATATGTACTACGAAAATTCCTATGCCTTAGCAGTCTTATCTA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCCTTTGGAAAACCTGCAGATCATCAGAGGAAATATGTACTACGAAAATTCCTATGCCTTAGCAGTCTTATCTA 370
Query 371 ACTATGATGCAAATAAAACCGGACTGAAGGAGCTGCCCATGAGAAATTTACAGGAAATCCTGCATGGCGCCGTG 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACTATGATGCAAATAAAACCGGACTGAAGGAGCTGCCCATGAGAAATTTACAGGAAATCCTGCATGGCGCCGTG 444
Query 445 CGGTTCAGCAACAACCCTGCCCTGTGCAACGTGGAGAGCATCCAGTGGCGGGACATAGTCAGCAGTGACTTTCT 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CGGTTCAGCAACAACCCTGCCCTGTGCAACGTGGAGAGCATCCAGTGGCGGGACATAGTCAGCAGTGACTTTCT 518
Query 519 CAGCAACATGTCGATGGACTTCCAGAACCACCTGGGCAGCTGCCAAAAGTGTGATCCAAGCTGTCCCAATGGGA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAGCAACATGTCGATGGACTTCCAGAACCACCTGGGCAGCTGCCAAAAGTGTGATCCAAGCTGTCCCAATGGGA 592
Query 593 GCTGCTGGGGTGCAGGAGAGGAGAACTGCCAGAAACTGACCAAAATCATCTGTGCCCAGCAGTGCTCCGGGCGC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCTGCTGGGGTGCAGGAGAGGAGAACTGCCAGAAACTGACCAAAATCATCTGTGCCCAGCAGTGCTCCGGGCGC 666
Query 667 TGCCGTGGCAAGTCCCCCAGTGACTGCTGCCACAACCAGTGTGCTGCAGGCTGCACAGGCCCCCGGGAGAGCGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGCCGTGGCAAGTCCCCCAGTGACTGCTGCCACAACCAGTGTGCTGCAGGCTGCACAGGCCCCCGGGAGAGCGA 740
Query 741 CTGCCTGGTCTGCCGCAAATTCCGAGACGAAGCCACGTGCAAGGACACCTGCCCCCCACTCATGCTCTACAACC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTGCCTGGTCTGCCGCAAATTCCGAGACGAAGCCACGTGCAAGGACACCTGCCCCCCACTCATGCTCTACAACC 814
Query 815 CCACCACGTACCAGATGGATGTGAACCCCGAGGGCAAATACAGCTTTGGTGCCACCTGCGTGAAGAAGTGTCCC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCACCACGTACCAGATGGATGTGAACCCCGAGGGCAAATACAGCTTTGGTGCCACCTGCGTGAAGAAGTGTCCC 888
Query 889 CGTAATTATGTGGTGACAGATCACGGCTCGTGCGTCCGAGCCTGTGGGGCCGACAGCTATGAGATGGAGGAAGA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CGTAATTATGTGGTGACAGATCACGGCTCGTGCGTCCGAGCCTGTGGGGCCGACAGCTATGAGATGGAGGAAGA 962
Query 963 CGGCGTCCGCACTAGTACGACGTTATAAGGTCGCCCGGGGGCA----GTGTATACGACCATTGGGACGAATCTG 1032
|||||||||||...|||.||.||...|||| |||..|..||| ||||| ||| ||||..|
Sbjct 963 CGGCGTCCGCAAGTGTAAGAAGTGCGAAGG--GCCTTGCCGCAAAGTGTGTA-ACG-----------GAATAGG 1022
Query 1033 TTGTAAATGGT---TTCAAA------------ATAGCTGCT-CTAATATGGAAATTAAGAGGCCGGGGGGCCTC 1090
| |.|||| ||.||| |||..|||| |.||||| |.||.| |.||
Sbjct 1023 T----ATTGGTGAATTTAAAGACTCACTCTCCATAAATGCTACGAATAT-----TAAACA----------CTTC 1077
Query 1091 GGTCTAAGTATAATAAAAACATGATCCGCCGTACAGCGGAGAAAGGGGGGGACT------------GGAGG-AG 1151
|||||| ||..||.||.| |||.||.|| .|| ||.|| |.
Sbjct 1078 --------------AAAAAC-TGCACCTCCAT-CAGTGGCGA---------TCTCCACATCCTGCCGGTGGCAT 1126
Query 1152 TTAGATGGCGGGTAAGGGAGTCGGGGCGGGATAGCTAGAGCCAGACAGATAAGATACATTGAGAGTT------- 1218
|||| |||| ||.|| || .||.|| |||| |
Sbjct 1127 TTAG-----GGGT----GACTC------------CT----TCACAC-------ATAC---------TCCTCCTC 1159
Query 1219 TGGACAATCCAC---AACTAGA-ATGCCGTGAAAA----AAATGATTT---ATGTGTGAAATTTGTGATGCTAT 1281
||| |||||| ||||.|| ||.| |||||| |||.||..| |.||.||| ||
Sbjct 1160 TGG---ATCCACAGGAACTGGATATTC--TGAAAACCGTAAAGGAAATCACAGGTTTGA----------GC--- 1215
Query 1282 TGCTTTATTTGTAACCATTATAAGCTGCAATAAACAAGTTCCTCTCACTCTGTGATATTCATTTCTTTGCAAGT 1355
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 1356 TATAAATAGTGAATAATAAGATGACATGAACTACTATACGTACTGCTAGAGATTTTCCAGACTGACTAAAAGGG 1429
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 1430 TCTGAGGGATCTCTAGTTACCAGAGTCACACAACAGACGGGCACACACTACTAGAAGCACTCAAGGCAAGCTTT 1503
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 1504 ATTGAGGCTTAAGCAGTGGGTTCCCTAGTTAGCCAGAGAGCTCCCAGGCTCAGATCTGGTCTAACCAGAGAGAC 1577
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 1578 CCGTTTATGTATCGAGCTAGGCACTTAAATACAATATCTTTGCAATGCGGCAATTCAGTGGTTCGTCCAATCCA 1651
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 1652 TGTCAGACCCGTCTGTTGCCTTCCTAATAAGGCACGATCGTACCACCTGACTTCCACCAATCGGCATGCACGGT 1725
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 1726 GCTTTTTCTCTCCTTGTAAGGCAAGTTGCTAACTCATCGTTACCATGTTGCAAGACTACAAGTTTATTGCATAA 1799
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 1800 GACTACATTAAGCTTGCAGCTCCAGCTTTTGTTCCCGTTAGTGAGGGTAAATGCGCGCTGGCGTTTCCGGCCTA 1873
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 1874 TTCATGCGAAGGCGCCACATCGTTCGGAAGCGCACGCTGCGGAGGCTGCTGCAGGAGAGGGAGCTTGTGGAGCC 1947
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 1948 TCTTACACCCAGTGGAGAAGCTCCCAACCAAGCTCTCTTGAGGATCTTGAAGGAAACTGAATTCAAAAAGATCA 2021
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2022 AAGTGCTGGGCTCCGGTGCGTTCGGCACGGTGTATAAGGGACTCTGGATCCCAGAAGGTGAGAAAGTTAAAATT 2095
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2096 CCCGTCGCTATCAAGGAATTAAGAGAAGCAACATCTCCGAAAGCCAACAAGGAAATCCTCGATGAAGCCTACGT 2169
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2170 GATGGCCAGCGTGGACAACCCCCACGTGTGCCGCCTGCTGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCA 2243
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2244 CGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTCCGGGAACACAAAGACAATATTGGCTCCCAGTACCTG 2317
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2318 CTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAACTACTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGC 2391
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2392 AGCCAGGAACGTACTGGTGAAAACACCGCAGCATGTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTG 2465
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2466 CGGAAGAGAAAGAATACCATGCAGAAGGAGGCAAAGTGCCTATCAAGTGGATGGCATTGGAATCAATTTTACAC 2539
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2540 AGAATCTATACCCACCAGAGTGATGTCTGGAGCTACGGGGTGACCGTTTGGGAGTTGATGACCTTTGGATCCAA 2613
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2614 GCCATATGACGGAATCCCTGCCAGCGAGATCTCCTCCATCCTGGAGAAAGGAGAACGCCTCCCTCAGCCACCCA 2687
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2688 TATGTACCATCGATGTCTACATGATCATGGTCAAGTGCTGGATGATAGACGCAGATAGTCGCCCAAAGTTCCGT 2761
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2762 GAGTTGATCATCGAATTCTCCAAAATGGCCCGAGACCCCCAGCGCTACCTTGTCATTCAGGGGGATGAAAGAAT 2835
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2836 GCATTTGCCAAGTCCTACAGACTCCAACTTCTACCGTGCCCTGATGGATGAAGAAGACATGGACGACGTGGTGG 2909
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2910 ATGCCGACGAGTACCTCATCCCACAGCAGGGCTTCTTCAGCAGCCCCTCCACGTCACGGACTCCCCTCCTGAGC 2983
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 2984 TCTCTGAGTGCAACCAGCAACAATTCCACCGTGGCTTGCATTGATAGAAATGGGCTGCAAAGCTGTCCCATCAA 3057
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 3058 GGAAGACAGCTTCTTGCAGCGATACAGCTCAGACCCCACAGGCGCCTTGACTGAGGACAGCATAGACGACACCT 3131
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 3132 TCCTCCCAGTGCCTGAATACATAAACCAGTCCGTTCCCAAAAGGCCCGCTGGCTCTGTGCAGAATCCTGTCTAT 3205
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 3206 CACAATCAGCCTCTGAACCCCGCGCCCAGCAGAGACCCACACTACCAGGACCCCCACAGCACTGCAGTGGGCAA 3279
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 3280 CCCCGAGTATCTCAACACTGTCCAGCCCACCTGTGTCAACAGCACATTCGACAGCCCTGCCCACTGGGCCCAGA 3353
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 3354 AAGGCAGCCACCAAATTAGCCTGGACAACCCTGACTACCAGCAGGACTTCTTTCCCAAGGAAGCCAAGCCAAAT 3427
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 3428 GGCATCTTTAAGGGCTCCACAGCTGAAAATGCAGAATACCTAAGGGTCGCGCCACAAAGCAGTGAATTTATTGG 3501
Sbjct 1216 -------------------------------------------------------------------------- 1215
Query 3502 AGCA 3505
Sbjct 1216 ---- 1215
