Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14622
- Subject:
- NM_201284.2
- Aligned Length:
- 3620
- Identities:
- 1774
- Gaps:
- 1620
Alignment
Query 1 ATGCGACCCTCCGGGACGGCCGGGGCAGCGCTCCTGGCGCTGCTGGCTGCGCTCTGCCCGGCGAGTCGGGCTCT 74
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGCGACCCTCCGGGACGGCCGGGGCAGCGCTCCTGGCGCTGCTGGCTGCGCTCTGCCCGGCGAGTCGGGCTCT 74
Query 75 GGAGGAAAAGAAAGTTTGCCAAGGCACGAGTAACAAGCTCACGCAGTTGGGCACTTTTGAAGATCATTTTCTCA 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 GGAGGAAAAGAAAGTTTGCCAAGGCACGAGTAACAAGCTCACGCAGTTGGGCACTTTTGAAGATCATTTTCTCA 148
Query 149 GCCTCCAGAGGATGTTCAATAACTGTGAGGTGGTCCTTGGGAATTTGGAAATTACCTATGTGCAGAGGAATTAT 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GCCTCCAGAGGATGTTCAATAACTGTGAGGTGGTCCTTGGGAATTTGGAAATTACCTATGTGCAGAGGAATTAT 222
Query 223 GATCTTTCCTTCTTAAAGACCATCCAGGAGGTGGCTGGTTATGTCCTCATTGCCCTCAACACAGTGGAGCGAAT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GATCTTTCCTTCTTAAAGACCATCCAGGAGGTGGCTGGTTATGTCCTCATTGCCCTCAACACAGTGGAGCGAAT 296
Query 297 TCCTTTGGAAAACCTGCAGATCATCAGAGGAAATATGTACTACGAAAATTCCTATGCCTTAGCAGTCTTATCTA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TCCTTTGGAAAACCTGCAGATCATCAGAGGAAATATGTACTACGAAAATTCCTATGCCTTAGCAGTCTTATCTA 370
Query 371 ACTATGATGCAAATAAAACCGGACTGAAGGAGCTGCCCATGAGAAATTTACAGGAAATCCTGCATGGCGCCGTG 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 ACTATGATGCAAATAAAACCGGACTGAAGGAGCTGCCCATGAGAAATTTACAGGAAATCCTGCATGGCGCCGTG 444
Query 445 CGGTTCAGCAACAACCCTGCCCTGTGCAACGTGGAGAGCATCCAGTGGCGGGACATAGTCAGCAGTGACTTTCT 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CGGTTCAGCAACAACCCTGCCCTGTGCAACGTGGAGAGCATCCAGTGGCGGGACATAGTCAGCAGTGACTTTCT 518
Query 519 CAGCAACATGTCGATGGACTTCCAGAACCACCTGGGCAGCTGCCAAAAGTGTGATCCAAGCTGTCCCAATGGGA 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CAGCAACATGTCGATGGACTTCCAGAACCACCTGGGCAGCTGCCAAAAGTGTGATCCAAGCTGTCCCAATGGGA 592
Query 593 GCTGCTGGGGTGCAGGAGAGGAGAACTGCCAGAAACTGACCAAAATCATCTGTGCCCAGCAGTGCTCCGGGCGC 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 GCTGCTGGGGTGCAGGAGAGGAGAACTGCCAGAAACTGACCAAAATCATCTGTGCCCAGCAGTGCTCCGGGCGC 666
Query 667 TGCCGTGGCAAGTCCCCCAGTGACTGCTGCCACAACCAGTGTGCTGCAGGCTGCACAGGCCCCCGGGAGAGCGA 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 TGCCGTGGCAAGTCCCCCAGTGACTGCTGCCACAACCAGTGTGCTGCAGGCTGCACAGGCCCCCGGGAGAGCGA 740
Query 741 CTGCCTGGTCTGCCGCAAATTCCGAGACGAAGCCACGTGCAAGGACACCTGCCCCCCACTCATGCTCTACAACC 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTGCCTGGTCTGCCGCAAATTCCGAGACGAAGCCACGTGCAAGGACACCTGCCCCCCACTCATGCTCTACAACC 814
Query 815 CCACCACGTACCAGATGGATGTGAACCCCGAGGGCAAATACAGCTTTGGTGCCACCTGCGTGAAGAAGTGTCCC 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCACCACGTACCAGATGGATGTGAACCCCGAGGGCAAATACAGCTTTGGTGCCACCTGCGTGAAGAAGTGTCCC 888
Query 889 CGTAATTATGTGGTGACAGATCACGGCTCGTGCGTCCGAGCCTGTGGGGCCGACAGCTATGAGATGGAGGAAGA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 CGTAATTATGTGGTGACAGATCACGGCTCGTGCGTCCGAGCCTGTGGGGCCGACAGCTATGAGATGGAGGAAGA 962
Query 963 CGGCGTCCGCACTAGTACGACGTTATAAGGTCGCCCGGGGGCA----GTGTATACGACCATTGGGACGAATCTG 1032
|||||||||||...|||.||.||...|||| |||..|..||| ||||| ||| ||||..|
Sbjct 963 CGGCGTCCGCAAGTGTAAGAAGTGCGAAGG--GCCTTGCCGCAAAGTGTGTA-ACG-----------GAATAGG 1022
Query 1033 TTGTAAATGGT---TTCAAA------------ATAGCTGCT-CTAATATGGAAATTAAGAGGCCGGGGGGCCTC 1090
| |.|||| ||.||| |||..|||| |.||||| |.||.| |.||
Sbjct 1023 T----ATTGGTGAATTTAAAGACTCACTCTCCATAAATGCTACGAATAT-----TAAACA----------CTTC 1077
Query 1091 GGTCTAAGTATAATAAAAACATGATCCGCCGTACAGCGGAGAAAGGGGGGGACTGGAGGAGTTAGATGGCGGGT 1164
|||||| ||..||.||.| |||.||.||
Sbjct 1078 --------------AAAAAC-TGCACCTCCAT-CAGTGGCGA-------------------------------- 1103
Query 1165 AAGGGAGTCGGGGCGGGATAGCTAGAGCCAGACAGATAAGATACATTGAGAGTTTGGACAATCCACAACTAGAA 1238
|| ||||||.| .
Sbjct 1104 -------TC----------------------------------------------------TCCACATC----C 1114
Query 1239 TGCCGTGAAAAAAATG--ATTTATGTGTGAAATTTGTGATGCTATTGCTTTATTTGTAACCATTATAAGCTGCA 1310
||||| .|| |||||.|.||| |.|.|||.| ||
Sbjct 1115 TGCCG--------GTGGCATTTAGGGGTG--------------ACTCCTTCA--------------------CA 1146
Query 1311 -ATAAACAAGTTCCTCTCACTCTGTGATATTCATTTCTTTGCAAGTTATAAATAGTGAATAATAAGAT-GACAT 1382
||| .||||| ||||| ||| .|||.
Sbjct 1147 CATA------CTCCTC---CTCTG-----------------------------------------GATCCACAG 1170
Query 1383 GAACTACTATACGTACTGCTAGAGATTTTCCAGACTGACTAAAAGGGTCTGAGGGATCTCTAGTTACCAGAGTC 1456
||| ||.||.|||.|..|.||.| |||| ||| |.||
Sbjct 1171 GAA---------------CTGGATATTCTGAAAACCG--TAAA----------GGA--------------AATC 1203
Query 1457 ACACAACAGACGGGCACACACTACTAGAAGCACTCAAGGCAAGCTTTATTGAGGCTTAAGCAGTGGGTTCCCTA 1530
||| ||| ||.|||..|.||
Sbjct 1204 ACA--------GGG-------------------------------TTTTTGCTGATT----------------- 1221
Query 1531 GTTAGCCAGAGAGCTCCCAGGCTCAGATCTGGTCT--AACCAGAGA--GACC------CGTTTATGTATCGAG- 1593
|||||| |||.|| ||.||| || |||| |.||| |||
Sbjct 1222 -----------------CAGGCT------TGGCCTGAAAACAG-GACGGACCTCCATGCCTTT-------GAGA 1264
Query 1594 --CTAGGCACTTAAATACAATATCTTTGCA-ATGCGGCAATTCAGTGGTTCGTCCAATC--CAT-GTCAGACCC 1661
|||| |||| || |.|||||| .|.||||.| ||| |||||
Sbjct 1265 ACCTAG------AAAT------------CATACGCGGCA-----------GGACCAAGCAACATGGTCAG---- 1305
Query 1662 GTCTGTTGCCTTCCTAATAAGGCACGATCGTACCA-CCTG------ACTTCCACCAATCGGCATGCACGGTGCT 1728
|.||..||| ||| .|||| || |||| ||.||| |.||.|
Sbjct 1306 ---TTTTCTCTT---------GCA--GTCGT--CAGCCTGAACATAACATCC-----TTGGGA----------- 1347
Query 1729 TTTTCTCTCCTTGTAAGGCAAGTTGCTAACTCATCGTTACCATG------TTGCA--AGACTACAAGTTTAT-- 1792
||.|.||||.| ||||..|.|||.|.||.| ..||| ||.|| |.|| |.||.|||.|
Sbjct 1348 -TTACGCTCCCT------CAAGGAGATAAGTGATGG---AGATGTGATAATTTCAGGAAAC-AAAAATTTGTGC 1410
Query 1793 --TGCATAAGACTACATTAAGCTTGCAGCTCCAGCT-TTTG----TTCCCGTTAGTGAGGGTAAATGCGCGCTG 1859
|||| |.||||.|||.||.|.| ..|.|| |||| .|||.||.||..|....||||
Sbjct 1411 TATGCA----AATACAATAAACTGGAA---AAAACTGTTTGGGACCTCCGGTCAGAAAACCAAAAT-------- 1469
Query 1860 GCGTTTCCGGCCTATTCATGCGAAGGCGCCACATCGTTCGGAAGCGCAC-GCTGCGGAGGCTGCTGCAGGAGAG 1932
||| || ||.|||..|.| ||| .|| ||||| .|| ||..||||..||
Sbjct 1470 ------------TAT-------AA---GCAACAGAGGT--GAA---AACAGCTGC-AAG---GCCACAGGCCAG 1512
Query 1933 GGAGCTTGTGGAGCCTCTTACA--CCCAGTGGAGAAGCTCCCAACCAAGCTCTCTTGAGGATCTTGAAGGAAAC 2004
| |||..|| ||..|| |||||| || ||||
Sbjct 1513 G--------------TCTGCCATGCCTTGT------GCTCCC--CC----------GAGG-------------- 1540
Query 2005 TGAATTCAAAAAGATCAAAG-TGCTGGGCTCCGGTGCGTTC--GGCACGGTGTATAAGGGACTCTGGATCCCAG 2075
| |||||||..||||.|| | ||.||.|.|| |||| |.||.|
Sbjct 1541 -------------------GCTGCTGGGGCCCGGAGC---CCAGGGACTGCGT--------CTCT---TGCCGG 1581
Query 2076 AAGGTGAGAAAGTTAAAATTCCCGTCGCTATCAAGGAAT---TAAGAGAA--GCAACATCTCCGAA-----AGC 2139
||.||.|| |||..| ||.||||| | .||.|| |||||.| ||.|.| |||
Sbjct 1582 AATGTCAG-------------CCGAGG----CAGGGAATGCGT-GGACAAGTGCAACCT-TCTGGAGGGTGAGC 1636
Query 2140 CAACAAGGAAATCCTCGATGAAGCCTACGTG-ATGGCCAGCGTGGACAACCCCCACGTGTGCCGCC-----TGC 2207
|| |.|||..|..|.|| |||..||..||| || ||| |||||.|| |||
Sbjct 1637 CA--AGGGAGTTTGTGGA-GAACTCTGAGTGCAT-----------ACA----------GTGCCACCCAGAGTGC 1686
Query 2208 TGGGCATCTGCCTCACCTCCACCGTGCAGCTCATCACGCAGCTCATGCCCTTCGGCTGCCTCCTGGACTATGTC 2281
|||||||| ..||.||.| ||||| ||||.|| |.|.|
Sbjct 1687 -------CTGCCTCA----GGCCATGAA---CATCA-------------------------CCTGCAC-AGGAC 1720
Query 2282 CGGGAACACAAAGACAA---TATTGGCTCCCAGTACCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGCATGAA 2352
.||||.| |||||| ||| ||| |||||| ..|
Sbjct 1721 GGGGACC----AGACAACTGTAT------CCA-----------------GTGTGC----------------CCA 1751
Query 2353 CTACTTGGAGGACCGTCGCTTGGTGCACCGCGACCTGGCAGCCAGGAACGT-ACTGGTGAAAACACCGCAGCAT 2425
||||.|.||.|.||..|.| |||..|..||||||.|.|.||||| || |..||.|||||||
Sbjct 1752 CTACATTGACGGCCCCCAC----TGCGTCAAGACCTGCCCGGCAGGA--GTCATGGGAGAAAACA--------- 1810
Query 2426 GTCAAGATCACAGATTTTGGGCTGGCCAAACTGCTGGGTGCGGAAGAGAAAGAATACCATGCAGAAGGAGGCAA 2499
||| || || |||..||||| ||| |||||.|..|||.|
Sbjct 1811 ---------ACA-------------CC---CT----GGTCTGGAAG--------TAC---GCAGACGCCGGCCA 1844
Query 2500 AGTGCCTATCAAGTGGATGGCATTGGAATCAATTTTACACAGAATCTATACCCACCAGAGTGATGTCTGGAGCT 2573
.||| ||.| |.||.|.||..|||.| |||.|.||
Sbjct 1845 TGTG-------------TGCC----------------------ACCTGTGCCATCCAAA-------CTGCACCT 1876
Query 2574 ACGGGGTGACCGTTTGGGAGTTGATGACCTTTGGATCCAAGCCATATGACGGAATCCCTGCCAGCGAGATCTCC 2647
||||| || .|||..||| || |..||.|||||||.|.| .|||
Sbjct 1877 ACGGG----CC----AGGAAATGA-GA-----GTCTCAAAGCCATGTTA-------------------TTCT-- 1915
Query 2648 TCCATCCTGGAGAAAGGAGAACGCCT-------CCCTCAGCCACCCATATGTACCATCGATGTCTACATGATCA 2714
|||| |..|||.|| |||| ||||
Sbjct 1916 ----------------------GCCTTTTTAAACTATCATCC-------TGTA-----------------ATCA 1943
Query 2715 TGGTCAAGTGCTGGATGATAGACGCAGATAGTCGC-CCAAAGTTCCGTGAGTTGATCATCGAATTCTCCAAAAT 2787
|||| .||||| .||||...|||.| |||.|| ||.|||
Sbjct 1944 -----AAGT----AATGAT---GGCAGCGTGTCCCACCAGAG---CGGGAG----------------------- 1979
Query 2788 GGCCCGAGACCCCCAGC-GCT----ACCTTGTCAT--TCAGGGGGATGAAAGAATGCATTTGCCAAGTCCTACA 2854
|||||| ||| | ||||| |.||| |||.|| .|||.|
Sbjct 1980 -----------CCCAGCTGCTCAGGA----GTCATGCTTAGG-----------ATGGAT--------CCCTTC- 2018
Query 2855 GACTCCAACTTCTACCGTGCCCTGA--------TGGATGAAGAAGACATGGACGACGTGGTGGATGCCGACGAG 2920
.|||||.|||| |.|| |||.| ||| |||||||||.|.|
Sbjct 2019 -------TCTTCTGCCGT---CAGAGTTTCAGCTGGGT----------TGG-------GGTGGATGCAGCC--- 2062
Query 2921 TACCT-CATCCCACAGCAGGGCTTCTTCAGCAGCCCCTCCACGTCACGGACTCCCCTCCTGAGCTCTCTGAGTG 2993
|||| |||.| |.||.|||||.||.|.| |...|.||||||.|| |||||||
Sbjct 2063 -ACCTCCATGC-----CTGGCCTTCTGCATCTG----TGATCATCACGGCCT--CCTCCTG------------- 2111
Query 2994 CAACCAGCAACAATTCCACCGTGGCTTGCATTGATAGAAATGGGCTGCAAAGCTGTCCCATCAAGGAAGACAGC 3067
||||
Sbjct 2112 ---------------CCAC------------------------------------------------------- 2115
Query 3068 TTCTTGCAGCGATACAGCTCAGACCCCACAGGCGCCTTGACTGAGGACAGCATAGACGACACCTTCCTCCCAGT 3141
Sbjct 2116 -------------------------------------------------------------------------- 2115
Query 3142 GCCTGAATACATAAACCAGTCCGTTCCCAAAAGGCCCGCTGGCTCTGTGCAGAATCCTGTCTATCACAATCAGC 3215
Sbjct 2116 -------------------------------------------------------------------------- 2115
Query 3216 CTCTGAACCCCGCGCCCAGCAGAGACCCACACTACCAGGACCCCCACAGCACTGCAGTGGGCAACCCCGAGTAT 3289
Sbjct 2116 -------------------------------------------------------------------------- 2115
Query 3290 CTCAACACTGTCCAGCCCACCTGTGTCAACAGCACATTCGACAGCCCTGCCCACTGGGCCCAGAAAGGCAGCCA 3363
Sbjct 2116 -------------------------------------------------------------------------- 2115
Query 3364 CCAAATTAGCCTGGACAACCCTGACTACCAGCAGGACTTCTTTCCCAAGGAAGCCAAGCCAAATGGCATCTTTA 3437
Sbjct 2116 -------------------------------------------------------------------------- 2115
Query 3438 AGGGCTCCACAGCTGAAAATGCAGAATACCTAAGGGTCGCGCCACAAAGCAGTGAATTTATTGGAGCA 3505
Sbjct 2116 -------------------------------------------------------------------- 2115
