Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14704
- Subject:
- NM_001165996.1
- Aligned Length:
- 2613
- Identities:
- 1232
- Gaps:
- 1227
Alignment
Query 1 ATGAGAGAGCTCGTCAACATTCCACTGGTACATATTCTTACTCTGGTTGCCTTCAGCGGAACTGAGAAACTTCC 74
|||||||||||.|||||||||||||||.||||.||.||.||.|||||||||||||||||.||||||||||||||
Sbjct 1 ATGAGAGAGCTTGTCAACATTCCACTGTTACAGATGCTCACCCTGGTTGCCTTCAGCGGGACTGAGAAACTTCC 74
Query 75 AAAAGCTCCTGTCATCACCACTCCTCTTGAAACAGTGGATGCCTTAGTTGAAGAAGTGGCTACTTTCATGTGTG 148
||||||.||||||||||||||.|||||||||||.||.||||||||.|||||||||||.||.|||||||||||||
Sbjct 75 AAAAGCCCCTGTCATCACCACGCCTCTTGAAACTGTAGATGCCTTGGTTGAAGAAGTAGCGACTTTCATGTGTG 148
Query 149 CAGTGGAATCCTACCCCCAGCCTGAGATTTCCTGGACTAGAAATAAAATTCTCATTAAACTCTTTGACACCCGG 222
|.||||||||||||||.|||||.||||||||.|||||.||||||||||||||||||||.||.|||||||||||.
Sbjct 149 CCGTGGAATCCTACCCTCAGCCCGAGATTTCTTGGACCAGAAATAAAATTCTCATTAAGCTGTTTGACACCCGC 222
Query 223 TACAGCATCCGGGAGAATGGGCAGCTCCTCACCATCCTGAGTGTGGAAGACAGTGATGATGGCATTTACTGCTG 296
||||||||||||||||||||.||||||||||||||.|||||.|||||||||||||||||||||||.||||||||
Sbjct 223 TACAGCATCCGGGAGAATGGTCAGCTCCTCACCATTCTGAGCGTGGAAGACAGTGATGATGGCATCTACTGCTG 296
Query 297 CACGGCCAACAATGGTGTGGGAGGAGCTGTGGAGAGTTGTGGAGCCCTGCAAGTGAAGATGAAACCTAAAATAA 370
||..|||||||||||.|||||||||||.||||||||||||||.|||||||||||||||||||||||||||||||
Sbjct 297 CATAGCCAACAATGGAGTGGGAGGAGCCGTGGAGAGTTGTGGTGCCCTGCAAGTGAAGATGAAACCTAAAATAA 370
Query 371 CTCGCCCTCCCATAAATGTGAAAATAATAGAGGGATTAAAAGCAGTCCTACCATGTACTACAATGGGTAATCCC 444
||||.||||||||.|||||.|||||||||||||||||.||.|||||.||.||.||.|||||.||||||||.|||
Sbjct 371 CTCGTCCTCCCATTAATGTAAAAATAATAGAGGGATTGAAGGCAGTTCTGCCGTGCACTACGATGGGTAACCCC 444
Query 445 AAACCATCAGTGTCTTGGATAAAGGGAGACAGCCCTCTCAGGGAAAATTCCCGAATTGCAGTTCTTGAATCTGG 518
||||||||.|||||.|||||.|||||.||||...|||||||||||||||||.||||.|||||||||||||||||
Sbjct 445 AAACCATCTGTGTCCTGGATCAAGGGGGACAATGCTCTCAGGGAAAATTCCAGAATCGCAGTTCTTGAATCTGG 518
Query 519 GAGCTTGAGGATTCATAACGTACAAAAGGAAGATGCAGGACAGTATCGATGTGTGGCAAAAAACAGCCTCGGGA 592
||||||.|||||.|||||.||.|||||||||||||||||||||||.||.||||||||.|||||||||||.||.|
Sbjct 519 GAGCTTAAGGATCCATAATGTGCAAAAGGAAGATGCAGGACAGTACCGCTGTGTGGCCAAAAACAGCCTGGGCA 592
Query 593 CAGCATATTCCAAAGTGGTGAAGCTGGAAGTTGAGGTTTTTGCCAGGATCCTGCGGGCTCCTGAATCCCACAAT 666
||||.||.||||||.||||||||||||||||.|||||||||||.||.||||||||.||||||||||||||||||
Sbjct 593 CAGCTTACTCCAAACTGGTGAAGCTGGAAGTGGAGGTTTTTGCAAGAATCCTGCGTGCTCCTGAATCCCACAAT 666
Query 667 GTCACCTTTGGCTCCTTTGTGACCCTGCACTGTACAGCAACAGGCATTCCTGTCCCCACCATCACCTGGATTGA 740
|||||||||||.||||||||.|||||.|.|||.|||||||.||||||.||||||||||||||||.|||||||||
Sbjct 667 GTCACCTTTGGTTCCTTTGTAACCCTACGCTGCACAGCAATAGGCATCCCTGTCCCCACCATCAGCTGGATTGA 740
Query 741 AAACGGAAATGCTGTTTCTTCTGGGTCCATTCAAGAGAGTGTGAAAGACCGAGTGATTGACTCAAGACTGCAGC 814
|||||||||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||.||||
Sbjct 741 AAACGGAAATGCTGTTTCTTCAGGTTCCATTCAAGAGAGTGTGAAAGACCGAGTGATTGACTCAAGACTCCAGC 814
Query 815 TGTTTATCACCAAGCCAGGACTCTACACATGCATAGCTACCAATAAGCATGGGGAGAAGTTCAGTACTGCCAAG 888
|.||.|||||.||||||||||||||||||||||||||||||||||||||.||.||.|||||||||||.||.|||
Sbjct 815 TCTTCATCACAAAGCCAGGACTCTACACATGCATAGCTACCAATAAGCACGGAGAAAAGTTCAGTACCGCAAAG 888
Query 889 GCTGCAGCCACCATCAGCATAGCAGAATGGAGTAAACCACAGAAAGATAACAAAGGCTACTGCGCCCAGTACAG 962
|||||||||||..||||||||||||||||||||||..||||||||||.|.|.||||||||||.|||||||||||
Sbjct 889 GCTGCAGCCACTGTCAGCATAGCAGAATGGAGTAAGTCACAGAAAGACAGCCAAGGCTACTGTGCCCAGTACAG 962
Query 963 AGGGGAGGTGTGTAATGCAGTCCTGGCAAAAGATGCTCTTGTTTTTCTCAACACCTCCTATGCGGACCCTGAGG 1036
|||||||||||||.|||||||||||||.||||||||||||||.||..|||||||||||||...||||||.||||
Sbjct 963 AGGGGAGGTGTGTGATGCAGTCCTGGCGAAAGATGCTCTTGTCTTCTTCAACACCTCCTACCGGGACCCCGAGG 1036
Query 1037 AGGCCCAAGAGCTACTGGTCCACACGGCCTGGAATGAACTGAAAGTAGTGAGCCCAGTCTGCCGGCCAGCTGCT 1110
|.|||||.|||||.|||.|||||||.||.||||||||.|||||.|..|||||.|||.|.|||||||||||||||
Sbjct 1037 ACGCCCAGGAGCTGCTGATCCACACTGCGTGGAATGAGCTGAAGGCTGTGAGTCCACTGTGCCGGCCAGCTGCT 1110
Query 1111 GAGGCTTTGTTGTGTAACCACATCTTCCAGGAGTGCAGTCCTGGAGTAGTGCCTACTCCTATTCCCATTTGCAG 1184
||||||.||.|||||||||||.|||||||.||||||||.||||||||.||.||||||||.||.|||||||||||
Sbjct 1111 GAGGCTCTGCTGTGTAACCACCTCTTCCAAGAGTGCAGCCCTGGAGTGGTACCTACTCCCATGCCCATTTGCAG 1184
Query 1185 AGAGTACTGCTTGGCAGTAAAGGAGCTCTTCTGCGCAAAAGAATGGCTGGTAATGGAAGAGAAGACCCACAGAG 1258
||||||||||.||||.|||||||||||||||||.|||||.|||||||.||.||||||||..|||.|||||.|.|
Sbjct 1185 AGAGTACTGCCTGGCGGTAAAGGAGCTCTTCTGTGCAAAGGAATGGCAGGCAATGGAAGGAAAGGCCCACCGGG 1258
Query 1259 GACTCTACAGATCCGAGATGCATTTGCTGTCC-GTGCCAGAATGCAGCAAGCTTCCCAGCATGCATTGGGACCC 1331
|.|||||||||||.|.|||||||.|.|| ||| ||.|||||.|||||||||||||||||||||||..|||||||
Sbjct 1259 GCCTCTACAGATCTGGGATGCATCTCCT-TCCGGTACCAGAGTGCAGCAAGCTTCCCAGCATGCACCGGGACCC 1331
Query 1332 CACGGCCTGTGCCAGACTGCCACATCTAGATTATAACAAAGAAAACCTAAAAACATTCCCACCAATGACGTCCT 1405
|||.|||||..|.|||||||||.||.||| .|||||||||| .|||| |||
Sbjct 1332 CACAGCCTGCACAAGACTGCCATATTTAG---GTAACAAAGAA-----------GTTCC-----------TCC- 1379
Query 1406 CAAAGCC-----AAGTGTGGACATTCCAAATCTGCCTTCCTCCTCCTCTTCTTCCTTCTCTGTCTCACCTACAT 1474
||.| ||||
Sbjct 1380 ---AGACTTTGGAAGT---------------------------------------------------------- 1392
Query 1475 ACTCCATGACTGTAATAATCTCCATCATGTCCAGCTTTGCAATATTTGTGCTTCTTACCATAACTACTCTCTAT 1548
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1549 TGCTGCCGAAGAAGAAAACAATGGAAAAATAAGAAAAGAGAATCAGCAGCAGTAACCCTCACCACACTGCCTTC 1622
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1623 TGAGCTCTTACTAGATAGACTTCATCCCAACCCCATGTACCAGAGGATGCCGCTCCTTCTGAACCCCAAATTGC 1696
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1697 TCAGCCTGGAGTATCCAAGGAATAACATTGAATATGTGAGAGACATCGGAGAGGGAGCGTTTGGAAGGGTGTTT 1770
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1771 CAAGCAAGGGCACCAGGCTTACTTCCCTATGAACCTTTCACTATGGTGGCAGTAAAGATGCTCAAAGAAGAAGC 1844
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1845 CTCGGCAGATATGCAAGCGGACTTTCAGAGGGAGGCAGCCCTCATGGCAGAATTTGACAACCCTAACATTGTGA 1918
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1919 AGCTATTAGGAGTGTGTGCTGTCGGGAAGCCAATGTGCCTGCTCTTTGAATACATGGCCTATGGTGACCTCAAT 1992
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 1993 GAGTTCCTCCGCAGCATGTCCCCTCACACCGTGTGCAGCCTCAGTCACAGTGACTTGTCTATGAGGGCTCAGGT 2066
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2067 CTCCAGCCCTGGGCCCCCACCCCTCTCCTGTGCTGAGCAGCTTTGCATTGCCAGGCAGGTGGCAGCTGGCATGG 2140
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2141 CTTACCTCTCAGAACGTAAGTTTGTTCACCGAGATTTAGCCACCAGGAACTGCCTGGTGGGCGAGAACATGGTG 2214
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2215 GTGAAAATTGCCGACTTTGGCCTCTCCAGGAACATCTACTCAGCAGACTACTACAAAGCTAATGAAAACGACGC 2288
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2289 TATCCCTATCCGTTGGATGCCACCAGAGTCCATTTTTTATAACCGCTACACTACAGAGTCTGATGTGTGGGCCT 2362
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2363 ATGGCGTGGTCCTCTGGGAGATCTTCTCCTATGGCCTGCAGCCCTACTATGGGATGGCCCATGAGGAGGTCATT 2436
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2437 TACTACGTGCGAGATGGCAACATCCTCTCCTGCCCTGAGAACTGCCCCGTGGAGCTGTACAATCTCATGCGTCT 2510
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2511 ATGTTGGAGCAAGCTGCCTGCAGACAGACCCAGTTTCACCAGTATTCACCGAATTCTGGAACGCATGTGTGAGA 2584
Sbjct 1393 -------------------------------------------------------------------------- 1392
Query 2585 GGGCAGAGGGAACTGTGAGTGTC 2607
Sbjct 1393 ----------------------- 1392
