Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14742
- Subject:
- NR_073450.2
- Aligned Length:
- 1994
- Identities:
- 1033
- Gaps:
- 847
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGAGGAAAGAAGAGAGGGGACTGAAGACAGACTTTGAGAGGGCTCAGAAACCCAGTACACCCCCTGTCCCAGCC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGTCCACCTGCTGCTGTGGCCACAGCGAGAGAAAAGACAGCTAGTAAGATAGGAAGTGAGGCCAGGTACCTTG 148
Query 1 ---------ATGAAGCTCTGCGTGACTGTCC-----TGTCTCTC-------------CTCA------------T 35
|||....||.|.|.||| ||| |||||| | |||| |
Sbjct 149 TGGGCAGTGATGTCATTCGGTGCGAC--TCCTAAGATGTCTC-CAGAGATGGGAGAGCTCACCCAAACCAGGTT 219
Query 36 GCTAGTAG--CTGCCTTCTGCTCTCCAGCGCTCTCAGCACCA-----------AGTAAG----TC-----TAC- 86
|| ||.|| |||..|||..|.|..||||| .|||||.|| || ||| || |||
Sbjct 220 GC-AGAAGATCTGGATTCCACACAGCAGCG---GCAGCAGCAGGCTGCAACGGAG-AAGGGGCTCATCCATACC 288
Query 87 ----TTTTGCAGCTGCTATTTC-----------GAGTCAAGGTG-------------TAGGCAGAGTCCT-TTT 131
|||..|| |||.| || |||.|||| .||||| ||.||| |.|
Sbjct 289 CCAGTTTACCA------ATTCCCCCACAATGGTGA-TCATGGTGGGTTTACCAGCTCGAGGCA-AGACCTATAT 354
Query 132 TTCTAGTCATGGCTGGCAAACAGTGGGAT-------CTGGGGATGGG-------ACAAAAGGCAG-----CTTG 186
.||.| ||..||| ||.|| ||| || ||||.|| ||.|||||||| |.||
Sbjct 355 CTCCA--CAAAGCT--CACAC-----GATATCTCAACT--GGATAGGAACACCAACTAAAGGCAGTGCGCCCTG 417
Query 187 CCAACTTTCTTGTACAAAGTTGGC-ATTATC---------AGAAAG--CA--TTGC--TTATCACTTCGCTGCA 244
.||.| |.||.|..|.|||..| |.|||| ||.||| || |||| || ||.|.|||.
Sbjct 418 GCAGC---CCTGAAGGATGTTCACAACTATCTCAGCCATGAGGAAGGTCATGTTGCGGTT-----TTTGATGCC 483
Query 245 ACGAACA---------------GGTCA-----CCATCAGT---CAAAATAAAATCATTA--------TTGCCAT 287
||.|||| ||||| ||..|||| |||||.||.||..||| ||..|||
Sbjct 484 ACCAACACTACCAGAGAACGACGGTCACTGATCCTGCAGTTTGCAAAAGAACATGGTTACAAGGTGTTTTTCAT 557
Query 288 CCAGCTGATT---------CCCGACATAATTGCAGAAAACATCAGGCAAGTGAAACTTGGCAGCCCTGATTATA 352
..||...||| ||.|.||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 TGAGTCCATTTGTAATGACCCTGGCATAATTGCAGAAAACATCAGGCAAGTGAAACTTGGCAGCCCTGATTATA 631
Query 353 TAGACTGTGACCGGGAAAAGGTTCTGGAAGACTTTCTAAAGAGAATTGAGTGCTATGAGGTCAACTACCAACCC 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TAGACTGTGACCGGGAAAAGGTTCTGGAAGACTTTCTAAAGAGAATTGAGTGCTATGAGGTCAACTACCAACCC 705
Query 427 TTGGATGAGGAACTGGACAGCCACCTGTCCTACATCAAGATCTTCGACGTGGGCACACGCTACATGGTGAACCG 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TTGGATGAGGAACTGGACAGCCACCTGTCCTACATCAAGATCTTCGACGTGGGCACACGCTACATGGTGAACCG 779
Query 501 AGTGCAGGATCACATCCAGAGCCGCACAGTCTACTACCTCATGAATATCCATGTCACACCTCGCTCCATCTACC 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGTGCAGGATCACATCCAGAGCCGCACAGTCTACTACCTCATGAATATCCATGTCACACCTCGCTCCATCTACC 853
Query 575 TTTGCCGACATGGCGAGAGTGAACTCAACATCAGAGGCCGCATCGGAGGTGACTCTGGCCTCTCAGTTCGCGGC 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 854 TTTGCCGACATGGCGAGAGTGAACTCAACATCAGAGGCCGCATCGGAGGTGACTCTGGCCTCTCAGTTCGCGGC 927
Query 649 AAGCAGTATGCCTATGCCCTGGCCAACTTCATTCAGTCCCAGGGCATCAGCTCCCTGAAGGTGTGGACCAGTCA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 928 AAGCAGTATGCCTATGCCCTGGCCAACTTCATTCAGTCCCAGGGCATCAGCTCCCTGAAGGTGTGGACCAGTCA 1001
Query 723 CATGAAGAGGACCATCCAGACAGCTGAGGCCCTGGGTGTCCCCTATGAGCAGTGGAAGGCCCTGAATGAGATTG 796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CATGAAGAGGACCATCCAGACAGCTGAGGCCCTGGGTGTCCCCTATGAGCAGTGGAAGGCCCTGAATGAGATTG 1075
Query 797 ATGCGGGTGTCTGTGAGGAGATGACCTATGAAGAAATCCAGGAACATTACCCTGAAGAATTTGCACTGCGAGAC 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ATGCGGGTGTCTGTGAGGAGATGACCTATGAAGAAATCCAGGAACATTACCCTGAAGAATTTGCACTGCGAGAC 1149
Query 871 CAAGATAAATATCGCTACCGCTATCCCAAGGGAGAGTCCTATTATGATTTTATTTTGACTC----------GAT 934
||||||||||||||||||||||||||||||||||||||||||.|.|||.|..||..|..|| |||
Sbjct 1150 CAAGATAAATATCGCTACCGCTATCCCAAGGGAGAGTCCTATGAGGATCTGGTTCAGCGTCTGGAGCCAGTGAT 1223
Query 935 AGTCGACCT-------------------------------------------ATTCGTTGC------------- 952
|.|.||.|| ||.||.|||
Sbjct 1224 AATGGAGCTAGAACGACAGGAGAATGTACTGGTGATCTGCCACCAGGCTGTCATGCGGTGCCTCCTGGCCTATT 1297
Query 953 --------AAGCAAATTC-GATGAG----------------------------CAATGCT------------TT 977
|| ||.||| |||||| ||.|||| |.
Sbjct 1298 TCCTGGATAA--AAGTTCAGATGAGCTTCCATATCTCAAGTGCCCTCTGCACACAGTGCTCAAACTCACTCCTG 1369
Query 978 T---TTAT-------------AATGCCAACT-----------------TTGTACA------------------A 1000
| |||| ||| |||.|| .||.||| |
Sbjct 1370 TGGCTTATGGCTGCAAAGTGGAAT-CCATCTACCTGAATGTGGAGGCCGTGAACACACACCGGGAGAAGCCTGA 1442
Query 1001 AAAAGTTGG----CACC----------ATGAAGCTCTGCGTGACTGTC-----------CTG------------ 1037
.||.| ||| |||| |.|||||.||| |..|||||| |||
Sbjct 1443 GAATG-TGGACATCACCCGGGAACCTGAGGAAGCCCTG-GATACTGTCCCAGCCCACTACTGAGCCCTTTCCAA 1514
Query 1038 --------------TCTCTCCTCAT-GC----------TAGTA---GCTGCCTTCTGC---TCTCCAGCGCT-- 1078
|.|.||||||| || |||.| |||..||| ||| |||||..|.||
Sbjct 1515 GAAGTCAAACTGCCTGTGTCCTCATCGCCTTCCACCTTTAGGAAATGCTATCTT-TGCTCTTCTCCTACTCTGC 1587
Query 1079 ------CTCA-----GCACC---------------AAGT------------------AAGTCTACTTTTGC--- 1105
|||| ||||| |||| |||.|| |..||||
Sbjct 1588 CTTGGCCTCACTGAGGCACCCCACTTCCAGTGAAGAAGTCCTCCGCAACTCCCAAACAAGCCT-CGCTTGCTGG 1660
Query 1106 ---------AGCTGCTATTT-----------------------------------------CGAGTCAAG---- 1125
||..|||||.| |||.|.|||
Sbjct 1661 CCGCAACCAAGGAGCTATCTAGCTCTGGAGGAAACTTTCTTTCTTAATTCCTATTCTCTGACGAATAAAGACTT 1734
Query 1126 ----------------GTGTAGGCAGAGTC---------CTTTT----TT------------------CTAGTC 1152
|.|.||| || ||| ||||| || |||.||
Sbjct 1735 ACTGCCTACAAGAGGAGAGGAGG-AG-GTCATGGCGAGGCTTTTCCAGTTGTTCTCAAGGTACTGACCCTAATC 1806
Query 1153 ATG-----GCT-------------GGCAAACAGTGGGATCTGGGGAT--------GGGACAAAAG-------GC 1193
.|| ||| ||||...|.|||| ||.|||| ||| ||||| |.
Sbjct 1807 CTGACCCAGCTCTGCTGCTGTGAGGGCATGGAATGGG---TGAGGATTTCCTGGAGGG--AAAAGTTCTACAGT 1875
Query 1194 AGC------------------------------------------------------------------- 1196
|||
Sbjct 1876 AGCACCTCCAAAGATGGGGGAGAAGATAGGTGCCTGTGAGTTCCTGTGGGCCTTGTTCCAGCAAGGTGGC 1945
