Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14755
- Subject:
- NR_145486.1
- Aligned Length:
- 2948
- Identities:
- 1016
- Gaps:
- 1789
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACCAAGTACCAAAGTTCCGCAAGAGGAGCAAGACAGCAACTCCAATAAGTGTCTGCTCAGGACACAGCTTCAGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CCTTTGTGGTCTGCTGTCTCCCAAGGGCTCCAGGACCTTTGGAATTCTTGTCACTTCCATTCAAGGGCCTACAA 148
Query 1 --------------------------------------------ATGACCCGGGACGAGGCACTGCCGGACTCT 30
|||||||||||.||.||.||.||.|||||.
Sbjct 149 GGACCTCACGAGGTGTTTGGGATCCCCCTGAGATCCACGTGACCATGACCCGGGATGACGCCCTCCCTGACTCG 222
Query 31 CATTCTGCACAGGAC-TTCTATGAGAATTATGAGCCCAAAGAGATCCTGGGCAGGGGCGTTAGCAGTGTGGTCA 103
||||||||||| ||| |||||.|||||.|||||||||||.|||||||||||||||||.||.|||||||||||||
Sbjct 223 CATTCTGCACA-GACTTTCTACGAGAACTATGAGCCCAAGGAGATCCTGGGCAGGGGAGTCAGCAGTGTGGTCA 295
Query 104 GGCGATGCATCCACAAGCCCACGAGCCAGGAGTACGCCGTGAAGGTCATCGACGTCACCGGTGGAGGCAGCTTC 177
||||.|||||||||||.|||||..|||||||.|||||.|||||..||||.|||.|||||||.|||||.|||||.
Sbjct 296 GGCGCTGCATCCACAAACCCACATGCCAGGAATACGCAGTGAAAATCATTGACATCACCGGAGGAGGAAGCTTT 369
Query 178 AGCCCGGAGGAGGTGCGGGAGCTGCGAGAAGCCACGCTGAAGGAGGTGGACATCCTGCGCAAGGTCTCAGGGCA 251
|||.|.||||||||.|.||||||.||.||||||||.||||||||||||||||||||||..||||||||.||.||
Sbjct 370 AGCTCTGAGGAGGTACAGGAGCTTCGGGAAGCCACCCTGAAGGAGGTGGACATCCTGCAGAAGGTCTCGGGACA 443
Query 252 CCCCAACATCATACAGCTGAAGGACACTTATGAGACCAACACTTTCTTCTTCTTGGTGTTTGACCTGATGAAGA 325
||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||.||||||||||
Sbjct 444 CCCCAACATCATACAGCTGAAGGACACTTACGAGACCAACACTTTCTTCTTCTTGGTATTTGATCTGATGAAGA 517
Query 326 GAGGGGAGCTCTTTGACTACCTCACTGAGAAGGTCACCTTGAGTGAGAAGGAAACCAGAAAANATCATGCGAGC 399
|||||||.|||||||||||.||||||||||||||||||||.|..|||||||||||||| |||.||||||||.||
Sbjct 518 GAGGGGAACTCTTTGACTATCTCACTGAGAAGGTCACCTTAACCGAGAAGGAAACCAG-AAAGATCATGCGGGC 590
Query 400 TCTGCTGGAGGTGATCTGCACCTTGCACAAACTCAACATCGTGCACCGGGACCTGAAGCCCGAGAACATTCTCT 473
.|||||||||||||||||.|||.||||||||||||||||.||.||.||||||||||||||.|||||.||.||.|
Sbjct 591 CCTGCTGGAGGTGATCTGTACCCTGCACAAACTCAACATTGTCCATCGGGACCTGAAGCCGGAGAATATCCTTT 664
Query 474 TGGATGACAACATGAACATCAAGCTCACAGACTTTGGCTTTTCCTGCCAGCTGGAGCCGGGAGAGAGGCTGCG- 546
||||||||||||||||.||.||||||||||||||.||.|||||||||||||||.||||.|||||||.|||.||
Sbjct 665 TGGATGACAACATGAATATAAAGCTCACAGACTTCGGGTTTTCCTGCCAGCTGCAGCCAGGAGAGAAGCTCCGA 738
Query 547 -------------------------------------------------------------------------- 546
Sbjct 739 GGTCTGGTACTATGTATGGCCTTGGCCCATAAAGAGGCCTCAAGGGTAGAGATTGCATGATTTTCTCCCCAGAA 812
Query 547 -------------------------------------------------------------------------- 546
Sbjct 813 TAAAAATTCTAGCATGTCAGTGGCTAATGAGATGGCTCAGTGGATCAAATGAGGACACAAGCATGAGGACCTGA 886
Query 547 -------------------------------------------------------------------------- 546
Sbjct 887 GTTCGAATCCCCAGAGCCCATGTAACTCCAGCAATAGGCTGGCAGCTAGGAGGATCTCTCGGGGTTGCTGGCTG 960
Query 547 -------------------------------------------------------------------------- 546
Sbjct 961 GTCTGCCTGAATCAGTCAGCTTCAGGCCAGTGAGAAATCCTGTCTCAAAAAGCAAGGTGAAAGCGGGGCGTGGT 1034
Query 547 -------------------------------------------------------------------------- 546
Sbjct 1035 GGCGCACGCCTTTAATCCCAAGCACTTGGGAGACAGAGGCAGGTGAATTTCTGAGTTCCAGAGTCAGGTTCCCA 1108
Query 547 -------------------------------------------------------------------------- 546
Sbjct 1109 CCACCTGAGCTCCACGCCCGGGTGCCTAAAAGGACCTAGGAATCCACAGGTGACCCTCCGAGCCTGTGTAGTCT 1182
Query 547 -------------------------------------------------------------------------- 546
Sbjct 1183 GCTGTTACTATTGAGTGTAAAATAGGAGAGCCCTCCCAAGCACTGTTTTTGTCCTGTCTCTTGGATCTCTTGGG 1256
Query 547 --------------------------------------------------------AGAGGTCTGTGGGACCCC 564
||||||.||||||||.||
Sbjct 1257 TAACTTCTTCCAAGGGAGGGCCCCTGGTGTCCTGTCCTGATAGCAGCCGTTCCCGCAGAGGTTTGTGGGACTCC 1330
Query 565 CAGTTACCTGGCCCCTGAGATTATCGAGTGCTCCATGAATGAGGACCACCCGGGCTACGGGAAAGAGGTGGACA 638
||||||.|||||||||||.||.||..|||||||||||.|.||.|.|||.||.|||||.|||||.||||||||||
Sbjct 1331 CAGTTATCTGGCCCCTGAAATCATACAGTGCTCCATGGACGACGGCCATCCTGGCTATGGGAAGGAGGTGGACA 1404
Query 639 TGTGGAGCACTGGCGTCATCATGTACACGCTGCTGGCCGGCTCCCCGCCCTTCTGGCACCGGAAGCAGATGCTG 712
||||||||||.|||||||||||||||||.||||||||.|||||||||||.|||||||||||||||||.||||||
Sbjct 1405 TGTGGAGCACAGGCGTCATCATGTACACTCTGCTGGCTGGCTCCCCGCCTTTCTGGCACCGGAAGCAAATGCTG 1478
Query 713 ATGCTGAGGATGATCATGAGCGGCAACTACCAGTTTGGCTCGCCCGAGTGGGATGATTACTCGGACACCGTGAA 786
|||.||.|||||||||||..||||||.||||||||||||||.||.|||||||||||.|||||.|||||.|||||
Sbjct 1479 ATGTTGCGGATGATCATGGACGGCAAATACCAGTTTGGCTCACCAGAGTGGGATGACTACTCTGACACAGTGAA 1552
Query 787 GGACCTGGT-TCTCCCGATTCCTGGTGGTGCAACCCCAGAACCGCTACACAGCGGAAGAGGCCTTGGCACACCC 859
.|||.|||| ||| ||||||.|||||||||||||.|||.||||||.|.|.|||||||||||||||||||||||
Sbjct 1553 AGACTTGGTGTCT--CGATTCTTGGTGGTGCAACCTCAGGACCGCTGCTCGGCGGAAGAGGCCTTGGCACACCC 1624
Query 860 CTTCTTCCAGCAGTACTTGGTGGAGGAAGTGCGGCACTTCAGCCCCCGGGGGAAGTTCAAGGTGATCGCTCTGA 933
.|||||.|||.|||||.|.||.||.|||||.|||||||||||||||||.||||||||||||||||||..|||.|
Sbjct 1625 TTTCTTTCAGGAGTACGTAGTAGAAGAAGTACGGCACTTCAGCCCCCGAGGGAAGTTCAAGGTGATCTGTCTAA 1698
Query 934 CCGTGCTGGCTTCAGTGCGGATCTACTACCAGTACCGCCGGGTGAAGCCTGTGACCCGGGAGATCGTCATCCGA 1007
|.||||||||.|||||...||||||||||||||||||.|||||||||||.||.|||.|||||||||||||||||
Sbjct 1699 CTGTGCTGGCATCAGTAAAGATCTACTACCAGTACCGTCGGGTGAAGCCGGTAACCAGGGAGATCGTCATCCGA 1772
Query 1008 GACCCCTATGCCCTCCGGCCTCTGCGCCGGCTCATCGACGCCTACGCTTTCCGAATCTATGGCCACTGGGTGAA 1081
||||||||.|||||.|||||.|||||..|||||||.||||||||.||||||||.|||||.||||||||||||||
Sbjct 1773 GACCCCTACGCCCTTCGGCCGCTGCGGAGGCTCATTGACGCCTATGCTTTCCGTATCTACGGCCACTGGGTGAA 1846
Query 1082 GAAGGGGCAGCAGCAGAACCGGGCAGCCCTTTTCGAGAACACACCCAAGGCCGTGCTCCTCTCCCTGGCCGAGG 1155
|||.|||||.|||||||||.|.||.|||||.|||||||||||.||||||||.||||||||||||.||||.||||
Sbjct 1847 GAAAGGGCAACAGCAGAACAGAGCCGCCCTCTTCGAGAACACGCCCAAGGCTGTGCTCCTCTCCTTGGCTGAGG 1920
Query 1156 AGGACTAC------------------------------------------------------------------ 1163
||||..||
Sbjct 1921 AGGAGGACTTCTGAAGGGCAGCGGGGGCCCAGGGGAAAGCAGACAGAGGGACTTGTGAGAAGAGGATGCCCCAA 1994
Query 1164 -------------------------------------------------------------------------- 1163
Sbjct 1995 GTAGCCTTCTGCAAAGGAATAGGTGGCCCTACTCTGTGCTCTCAAAGGCTTGCCTCTAGAAGCACAGGGTGTTC 2068
Query 1164 -------------------------------------------------------------------------- 1163
Sbjct 2069 CCAGTAAACAGCAGTAATTACAGCTGGAGCTGGATGTGCTGTGGCATGTGCCTGTTGCCCCGAGACAGTAGGAT 2142
Query 1164 -------------------------------------------------------------------------- 1163
Sbjct 2143 CACGGGTTCTAGCCCAGCCCGGGAAGTCTAGTGATGCTTATTTCAAAATAAAAATGAGGCTGGGAATGTAACCC 2216
Query 1164 -------------------------------------------------------------------------- 1163
Sbjct 2217 TGTGGTGAGTGTAAGGTCTCCAAATTCAACCTCTGGTACAGCTAAAATAGATAATAAATAAATAAATAATAAAT 2290
Query 1164 -------------------------------------------------------------------------- 1163
Sbjct 2291 CCAACGCAGCTGAGACCGTGATAGGCAGAAATGGAAGGGCATAGAGCACATGTATTCTGGGAGCTATAAGCCTT 2364
Query 1164 -------------------------------------------------------------------------- 1163
Sbjct 2365 CTGGCTTCTCTACTGTGCACCTTTGTTGATGTCTATAGTTTTCTTGTTTTTTTTTTTAAGATTTATGCATTTTA 2438
Query 1164 -------------------------------------------------------------------------- 1163
Sbjct 2439 TGTATGTTTTAGCTGCATGCATTTTATGTAACCCACATGCATGCAGTACCTGTAGAGGTCACAAGAAGGCATCA 2512
Query 1164 -------------------------------------------------------------------------- 1163
Sbjct 2513 GAAACCCTGAAACTGGAGTTGTATAGATAGCTGAGCCCACCTTGTGGGTGGTAGGAATTGAACCCCTCCTCAGC 2586
Query 1164 -------------------------------------------------------------------------- 1163
Sbjct 2587 AAGAACAGGCGCTCATAACTGTCTAGCTAAAGTTATGGATATTTGAGGAAGTGAAAGCAGGAGTTCAAGGTCAT 2660
Query 1164 -------------------------------------------------------------------------- 1163
Sbjct 2661 TTGTGGCTACACAAGGAGCTTGAGGCTAGCCTGGGCTACATGAAACCCTATCTCAAACAACAATTATATTGTGC 2734
Query 1164 -------------------------------------------------------------------------- 1163
Sbjct 2735 TTCCTGATATACATAAGAATTTATTGACCTCGGGCTGGTGTGATGGCTCAGTGGGTAAGAGTACCCGACTGCTC 2808
Query 1164 -------------------------------------------------------------------------- 1163
Sbjct 2809 TTCCAAAGGTCCAGTGTTCAAGTCCCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAGATCTGATGCCC 2882
Query 1164 -------------------------------------------------------------- 1163
Sbjct 2883 TCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTAA 2944
