Nucleotide Global Alignment

Description

• Query: ccsbBroad304_14790
• Subject: XR_939695.2
• Aligned Length: 3068
• Identities: 1673
• Gaps: 1321

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGTGCTGGCCTGCGCCCCCGAGCCGGATCGGCGGCCGCCCGGACTCCGAGCCCGCGCGGATGTGAGATTCCGGG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  CTCCTGGCGCCTCCCGATCGCCGGCTCCGGCGCGGCGCTGCTTCGCCCAGGAGGCGGCGGCCCCGGCTGGCCGT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGGGCTTGTGGATTTTTAAAAATTTGGCTCCGAGGAGGACCATTTCCTCTCGACATGCATCCCTCCGGATAGAC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  TGAACATCCCTCCGTTCACCCCCCCGCCCCGCGCGGTCAGAGGCAGGCGCTGAGTGTGCGAAGAGGATCCGGGT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TGAAATCTGCGCCCCCGGTTCTCGTCCCCGCCCCGTCCCACCGCCCCATCCCCCTCCCGGAGTCGAAATTTCCC  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  GGGATTATGTTTCGGAAAGGTAGGTAAGCGCCGGGCGCGGCGCCCGCTTTCCCGCAGTCCGGAGCCGGAGAGCC  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  AGCGAGGCGGCGAGGCAGCCCCCGCGGCTTGCAGCGGAGCCGACAGCTCGTCTTCTCTTCTGGAGGTGCAGCTG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GTGGTCGGGGGGAGAGACTTGCTCCAAACACGGACATCCCCCAGCTCTCCCCCCTCCCTGTTTTCCGTTAGGAA  592

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  593  CCCGGCGAGGAAATACATGCACTGGCTGAGAATCGCCCGCGCCAGGGCGCAACGCCACAAGGTGTAGGGAGTGT  666

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  667  GCGGGGTGGGGCGAAAGGGGACCCAAGAGTCCCTGTGGCTCGGAGTGCCGGGCCGTCGGTTCTTCATTCCTGCC  740

Query    1  ----------------------------------------------ATGGTAGTGTTCAATGGCCTTCTTAAGA  28
                                                          ||||||||||||||||||||||||||||
Sbjct  741  CTCGGGGCAGACGGAGTGACCCCGGCCCCCACTCCCCGCCCCGACCATGGTAGTGTTCAATGGCCTTCTTAAGA  814

Query   29  TCAAAATCTGCGAGGCCGTGAGCTTGAAGCCCACAGCCTGGTCGCTGCGCCATGCGGTGGGACCCCGGCCGCAG  102
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCAAAATCTGCGAGGCCGTGAGCTTGAAGCCCACAGCCTGGTCGCTGCGCCATGCGGTGGGACCCCGGCCGCAG  888

Query  103  ACTTTCCTTCTCGACCCCTACATTGCCCTCAATGTGGACGACTCGCGCATCGGCCAAACGGCCACCAAGCAGAA  176
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACTTTCCTTCTCGACCCCTACATTGCCCTCAATGTGGACGACTCGCGCATCGGCCAAACGGCCACCAAGCAGAA  962

Query  177  GACCAACAGCCCGGCCTGGCACGACGAGTTCGTCACCGATGTGTGCAACGGACGCAAGATCGAGCTGGCTGTCT  250
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GACCAACAGCCCGGCCTGGCACGACGAGTTCGTCACCGATGTGTGCAACGGACGCAAGATCGAGCTGGCTGTCT  1036

Query  251  TTCACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGAAC  324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TTCACGATGCCCCCATAGGCTACGACGACTTCGTGGCCAACTGCACCATCCAGTTTGAGGAGCTGCTGCAGAAC  1110

Query  325  GGGAGCCGCCACTTCGAGGACTGGATTGATCTGGAGCCAGAAGGAAGAGTGTATGTGATCATCGATCTCTCAGG  398
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  GGGAGCCGCCACTTCGAGGACTGGATTGATCTGGAGCCAGAAGGAAGAGTGTATGTGATCATCGATCTCTCAGG  1184

Query  399  GTCGTCGGGTGAAGCCCCTAAAGACAATGAAGAGCGTGTGTTCAGGGAACGCATGCGGCCGAGGAAGCGGCAGG  472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  GTCGTCGGGTGAAGCCCCTAAAGACAATGAAGAGCGTGTGTTCAGGGAACGCATGCGGCCGAGGAAGCGGCAGG  1258

Query  473  GGGCCGTCAGGCGCAGGGTCCATCAGGTCAACGGCCACAAGTTCATGGCCACCTATCTTCGGCAGCCCACCTAC  546
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  GGGCCGTCAGGCGCAGGGTCCATCAGGTCAACGGCCACAAGTTCATGGCCACCTATCTTCGGCAGCCCACCTAC  1332

Query  547  TGCTCCCATTGCAGAGACTTCATCTGGGGTGTCATAGGAAAGCAGGGATACCAGTGTCAAGTCTGCACCTGCGT  620
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  TGCTCCCATTGCAGAGACTTCATCTGGGGTGTCATAGGAAAGCAGGGATACCAGTGTCAAGTCTGCACCTGCGT  1406

Query  621  GGTCCACAAGCGGTGCCACGAGCTCATAATCACAAAGTGTGCTGGGGTTAAGAAGCAGGAAACCCCCGAACAGG  694
            ||||||||||||||||||||||||||||||||||||||||||||||.|.|||||||||||.||||||||.||||
Sbjct 1407  GGTCCACAAGCGGTGCCACGAGCTCATAATCACAAAGTGTGCTGGGTTAAAGAAGCAGGAGACCCCCGACCAGG  1480

Query  695  TGGGCTCCCAGCGGTTCAACCGTC-ACATGGCCCCA-AAGTTCGGTATCCACAACTACAAGGTCCCTACCTTCT  766
            ||||||||||||||||| |.|||| |||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1481  TGGGCTCCCAGCGGTTC-AGCGTCAACAT-GCCCCACAAGTTCGGTATCCACAACTACAAGGTCCCTACCTTCT  1552

Query  767  GCGATCACTGTGGGTCCCTGCTCTGGGGACTCTTGCGGCAGGGTTTGCAGTGTAAAGTCTGCAAAATGAATGTT  840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1553  GCGATCACTGTGGGTCCCTGCTCTGGGGACTCTTGCGGCAGGGTTTGCAGTGTAAAGTCTGCAAAATGAATGTT  1626

Query  841  CACCGTCGATGTGAGACCAACGTGGCTCCCAACTGTGGAGTGGATGCCAGAGGAATCGCCAAAGTACTGGCCGA  914
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627  CACCGTCGATGTGAGACCAACGTGGCTCCCAACTGTGGAGTGGATGCCAGAGGAATCGCCAAAGTACTGGCCGA  1700

Query  915  CCTGGGCGTTACCCCAGACAAAATCACCAACAGCGGCCAGAGAAGGAAAAAGCTCATTGCTGGTGCCGAGTCCC  988
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1701  CCTGGGCGTTACCCCAGACAAAATCACCAACAGCGGCCAGAGAAGGAAAAAGCTCATTGCTGGTGCCGAGTCCC  1774

Query  989  CGCAGCCTGCTTCTGGAAGCTCACCATCTGAGGAAGATCGATCCAAGTCAGCACCCACCTCCCCTTGTGACCAG  1062
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1775  CGCAGCCTGCTTCTGGAAGCTCACCATCTGAGGAAGATCGATCCAAGTCAGCACCCACCTCCCCTTGTGACCAG  1848

Query 1063  GAAATAAAAGAACTTGAGAACAACATTCGGAAAGCCTTGTCATTTGACAACCGAGGAGAGGAGCACCGGGCAGC  1136
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849  GAAATAAAAGAACTTGAGAACAACATTCGGAAAGCCTTGTCATTTGACAACCGAGGAGAGGAGCACCGGGCAGC  1922

Query 1137  ATCGTCTCCTGATGGCCAGCTGATGAGCCCCGGTGAGAATGGCGAAGTCCGGCAAGGCCAGGCCAAGCGCCTGG  1210
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1923  ATCGTCTCCTGATGGCCAGCTGATGAGCCCCGGTGAGAATGGCGAAGTCCGGCAAGGCCAGGCCAAGCGCCTGG  1996

Query 1211  GCCTGGATGAGTTCAACTTCATCAAGGTGTTGGGCAAAGGCAGCTTTGGCAAGGTCATGTTGGCAGAACTCAAG  1284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997  GCCTGGATGAGTTCAACTTCATCAAGGTGTTGGGCAAAGGCAGCTTTGGCAAGGTCATGTTGGCAGAACTCAAG  2070

Query 1285  GGCAAAGATGAAGTATATGCTGTGAAGGTCTTAAAGAAGGACGTCATCCTTCAGGATGATGACGTGGACTGCAC  1358
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2071  GGCAAAGATGAAGTATATGCTGTGAAGGTCTTAAAGAAGGACGTCATCCTTCAGGATGATGACGTGGACTGCAC  2144

Query 1359  AATGACAGAGAAGAGGATTTTGGCTCTGGCACGGAAACACCCGTACCTTACCCAACTCTACTGCTGCTTCCAGA  1432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145  AATGACAGAGAAGAGGATTTTGGCTCTGGCACGGAAACACCCGTACCTTACCCAACTCTACTGCTGCTTCCAGA  2218

Query 1433  CCAAGGACCGCCTCTTTTTCGTCATGGAATATGTAAATGGTGGAGACCTCATGTTTCAGATTCAGCGCTCCCGA  1506
            |||||                  |.|.||||.|.|    ||.||                              
Sbjct 2219  CCAAG------------------AGGCAATAGGAA----GTTGA------------------------------  2240

Query 1507  AAATTCGACGAGCCTCGTTCACGTTTCTATGCTGCAGAGGTCACATCGGCCCTCATGTTCCTCCACCAGCATGG  1580
                      ||||||   |||.|||                      |.||||||               |||
Sbjct 2241  ----------AGCCTC---CACTTTT----------------------GACCTCAT---------------TGG  2264

Query 1581  AGTCATCTACAGGGATTTGAAACTGGACAACAT--CCTTTCTGGATGCAGAAGGTCACTGCAAGCTGGCTGACT  1652
            || |||         ||||    |....|.|||  |.||.|   |.|.||||.|.||  |.|||      ||  
Sbjct 2265  AG-CAT---------TTTG----TTTTTACCATGACGTTCC---AGGGAGAATGCCA--GGAAG------GA--  2311

Query 1653  TCGGGATGTGCAAGGAAGGGATTCTGAATGGTGTGACGACCACCACGTTCTGTGGGACTCCTGACTACATAGCT  1726
            ||   |||.||||  ||.|.|||||                      .||.||..|.|||||       |||  
Sbjct 2312  TC---ATGGGCAA--AAAGAATTCT----------------------CTCAGTCCGCCTCCT-------TAG--  2349

Query 1727  CCTGAGATCCTGCAGGAGTTGGAGTATGGCCCCTCCGTGGACTGGTGGGCCCTGGGGGTGCTGATGTACGAGA-  1799
              ||.|     ||||||||..||          ||.||                      ||.|.|.||.||| 
Sbjct 2350  --TGTG-----GCAGGAGTATGA----------TCTGT----------------------CTCAAGGACAAGAA  2384

Query 1800  ---TGATGGCTGGACAGCCTCCCTTTGAGGCC-----------GACAATGAGGACGACCTATTTGAGTCC--AT  1857
               ||.||.||||      ||||.|   ||||           .|.|||||.| ||        .|||||  ||
Sbjct 2385  GTGTGGTGACTGG------TCCCAT---GGCCTATTTAGCTGGAAGAATGAAG-CG--------TAGTCCCTAT  2440

Query 1858  CC----TCCATGACGACGTGCTGTACCCAG-TCTGGCTCA--GCAAGGAGGCTGTCAGCATCTTGAA-------  1917
            ||    ||||.|||.|.|      .||.|| |..||||||  .|.|||.||.|.||..||    |||       
Sbjct 2441  CCTCTTTCCAAGACCAAG------GCCAAGATGGGGCTCAAGACCAGGGGGTTATCTACA----GAACTGCTGG  2504

Query 1918  ---AGCTTTCATGACGAAGAATCCCCACAAGCGCCTGGGCTGTGTGGCATCGCAGAATGGCGAGGACGCCATCA  1988
               |.|||.||            ||.||     ||||||                        ||||       
Sbjct 2505  CCCACCTTCCA------------CCTAC-----CCTGGG------------------------GGAC-------  2530

Query 1989  AGCAGCACCCATTCTTCAA-------------------------------AGAGATTGACTGGGTGCTC-CTGG  2030
                 |.|||  ||||.||                               .|||||.||.|.|| |||| .|||
Sbjct 2531  -----CTCCC--TCTTGAAGGTTGGGATTCTTTTTTTTCTTTTTTTTTTTTGAGATGGAGTCGG-GCTCTGTGG  2596

Query 2031  AGCAGAAGAAGATCAAGCCACCCTTCAAACCACGCATTAAAACCAAAAGAGACGTCAATAATTTTGACCAAGAC  2104
            ..||||.                                                                   
Sbjct 2597  CCCAGAC-------------------------------------------------------------------  2603

Query 2105  TTTACCCGGGAAGAGCCGGTACTCACCCTTGTGGACGAAGCAATTGTAAAGCAGATCAACCAGGAGGAATTCAA  2178
                                                                                      
Sbjct 2604  --------------------------------------------------------------------------  2603

Query 2179  AGGTTTCTCCTACTTTGGTGAAGACCTGATGCCC  2212
                                              
Sbjct 2604  ----------------------------------  2603