Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14833
- Subject:
- XR_001780060.1
- Aligned Length:
- 5474
- Identities:
- 1282
- Gaps:
- 4121
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGCCAGTCTGGGGCCTAGGCGCAGACGCATTGAGCTTAAGCAGCCGGTGATGGCGGCAGCAGCCGTGGAGTCT 74
Query 1 -----------------ATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGG 57
||||||||||||.|||||||||||||||||||||.|||.||.|||||||||.|||||
Sbjct 75 GCGGCGGGTCCGGGCCCATGAGGCGACGACGGAGGCGGGACGGCTTTTACCTAGCGCCTGACTTCCGACACAGG 148
Query 58 GAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCT 131
||||||||||||||||||||||||||||||||||||||||||||||||||.||.||.|||||||||||||||||
Sbjct 149 GAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAAGATGCAGGCTCTGAGGATGAGCT 222
Query 132 GGAGGAGGGGGGTCAGTTAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATT 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGAGGAGGGGGGTCAGTTAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATT 296
Query 206 GTGAGAAATTTGAAATCTCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTA 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTGAGAAATTTGAAATCTCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTA 370
Query 280 CTTCGGGTACTTGGTAAAGGGGGCTATGGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTTCGGGTACTTGGTAAAGGGGGCTATGGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAA 444
Query 354 AATATTTGCCATGAAGGTGCTTAAAAAGGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAG 427
.||||||||||||||||||||||||||||||||||||||.||.||||||||.||.||.||.||.||.|||||||
Sbjct 445 GATATTTGCCATGAAGGTGCTTAAAAAGGCAATGATAGTGAGGAATGCTAAGGACACGGCCCACACGAAAGCAG 518
Query 428 AACGGAATATTCTGGAGGAAGTAAAGCATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAA 501
|.|||||.||||||||||||||.||.||.||.|||||.|||||..|.|||||||||||||||||.||.|||||.
Sbjct 519 AGCGGAACATTCTGGAGGAAGTGAAACACCCTTTCATTGTGGACCTGATTTATGCCTTTCAGACCGGAGGAAAG 592
Query 502 CTCTACCTCATCCTTGAGTATCTCAGTGGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGA 575
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 593 CTCTACCTCATCCTCGAGTATCTCAGTGGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTCATGGA 666
Query 576 AGACACTGCCTGCTTTTACTTGGCAGAAATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATCTACA 649
||||||.||.||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 667 AGACACAGCGTGCTTTTACTTGGCTGAAATCTCCATGGCTTTGGGGCATTTACATCAAAAAGGGATCATCTACA 740
Query 650 GAGACCTGAAGCCGGAGAATATCATGCTTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATGCAAA 723
|||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 741 GAGACCTGAAGCCGGAGAACATCATGCTTAATCACCAAGGTCACGTGAAACTAACAGACTTTGGACTATGCAAA 814
Query 724 GAATCTATTCATGATGGAACAGTCACACACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTGAT 797
||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 815 GAATCTATTCATGATGGAACAGTCACGCACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTAAT 888
Query 798 GAGAAGTGGCCACAATCGTGCTGTGGATTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCAC 871
||||||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAGAAGCGGCCACAACCGTGCTGTGGATTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCAC 962
Query 872 CCCCATTCACTGGGGAGAATAGAAAGAAAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCCCTAC 945
|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 963 CTCCATTCACTGGGGAGAATAGAAAGAAAACAATTGACAAAATCCTCAAATGTAAACTTAATTTGCCTCCCTAC 1036
Query 946 CTCACACAAGAAGCCAGAGATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTGGTCC 1019
||||||||||||||..||||||||||||||||||||||||||||||||||||||||||||||.||||||||.||
Sbjct 1037 CTCACACAAGAAGCTCGAGATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTTGGAGCTGGCCC 1110
Query 1020 TGGGGACGCTGGAGAAGTTCAAGCTCATCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGAAAGG 1093
||||||.|||||||||||.|||||||||||.||.||.||||||||||||||||||||||||||||||||.||||
Sbjct 1111 TGGGGATGCTGGAGAAGTCCAAGCTCATCCTTTTTTCAGACACATTAACTGGGAAGAACTTCTGGCTCGGAAGG 1184
Query 1094 TGGAGCCCCCCTTTAAACCTCTGTT------------------------------------------------- 1118
||||.||.||||||||.||||||||
Sbjct 1185 TGGAACCTCCCTTTAAGCCTCTGTTGTTAAACCCTGTGCAAAGAATATAGGGCTTGTGGCACCTTTGATTGATA 1258
Query 1119 -----------------------------------------------GCAATCTGAAGAGGATGTAAGTCAGTT 1145
||||||||||||||||||.||||||||
Sbjct 1259 GGAATAATATAGACTGTTCACCATTTTCTAACCATTGTTCTTATGAAGCAATCTGAAGAGGATGTGAGTCAGTT 1332
Query 1146 TGATTCCAAGTTTACACGTCAGACACCTGTCGACAGCCCAGATGACTCAACTCTCAGTGAAAGTGCCAATCAGG 1219
||||||.|||||||||||||||||||||||.||||||||.||||||||.||||||||||||||||||||.||||
Sbjct 1333 TGATTCAAAGTTTACACGTCAGACACCTGTTGACAGCCCTGATGACTCCACTCTCAGTGAAAGTGCCAACCAGG 1406
Query 1220 TCTTTCTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCCTTTGAACCAAAA 1293
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||
Sbjct 1407 TCTTTCTGGGTTTTACATATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCATTTGAACCAAAA 1480
Query 1294 ATCCGATCACCTCGAAGATTTATTGGCAGCCCACGAACACCTGTCAG---------------TACTG------- 1345
||||||||.|||.|||||||||||||.||.||||||||||||||||| |.|||
Sbjct 1481 ATCCGATCTCCTAGAAGATTTATTGGTAGTCCACGAACACCTGTCAGCCCAGTCAAATTCTCTCCTGGGGATTT 1554
Query 1346 -------CTATGTGC----------------------------------------------------------- 1353
|.|.||||
Sbjct 1555 CTGGGGACGAGGTGCTTCAGCCAGCACGGCAAATCCTCAGACCCCTGTGGAATACCCAATGGAAACAAGTGGGA 1628
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1629 TAGAGCAGATGGATGTGACAGTGAGCGGGGAAGCATCAGCGCCACTTCCAATCCGACAACCCAACTCCGGGCCG 1702
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1703 TACAAAAAACAAGCTTTTCCTATGATCTCCAAACGGCCAGAGCACCTGCGGATGAATCTATGATGAAACAATGC 1776
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1777 TTTTATTAATGCAAAATCAAAAAGGAAACAAATCCGGGAAGGGGATGTGTGAGCATCCTGCAATATAAAAACAA 1850
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1851 GAATAAAATGGCAGTCTCAAAGAGTCAGTGTCATTACCTGGAATGCTTTCGATGGAGGAAAAAATAAACATGGA 1924
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1925 TTTTAAAAAATCAATCAAAAATGGTGCAAAAAAAAAAATAAACCCACAAAAAACTCAAGCAAAATAGTATTGTG 1998
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1999 GAATCCACAGACACATCAGCTGACTGGTTCCTATCCTAGCAACATCTCGGCGTTCGCAAGGGTTCTCATGCTGA 2072
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2073 TGGCTGCAAACTGACAGTATTAAGGGTAGGATGTTGCTTCGGAATCACCGTTGAAATCTGATGATGTCAAATAA 2146
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2147 GGGTTATCCTAATAGGCAAAGTTTGAGATTGCCTGTAATACTTGCAACTAAGGACAAATTAGCATGCAAGCTTT 2220
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2221 GTCAAACTTTTTCCAGCAACACAGAATCAAAGACAAAAGAAACTTTATCGATTGATGTTTTACGTGCAAACAAC 2294
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2295 CTGAATCTTTTTTTTATATAAATATATATTTTTCAAATAGATTTTTGATTCAGCTCATTATGAAAAACATCCCA 2368
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2369 AACTTTAAAATGCGAAGTTATTGGTTGGTGTGAAGAAAGCCAGCTTCTGTCTTCTCTTGATGAAATAAAATGCA 2442
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2443 AATGATCATTGTTAACCACAGCTGTGGCTTGTCTGAGGGCCTGGGGTGGACCTGGGGTGTTTTTTTAATCTTTT 2516
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2517 TGTTTTAGTAACCTAGCTGCAATACTTGTCTGTAATACTAGGGGGGAAAAGTCTGTTTAATCATTTTTACTTGC 2590
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2591 AGTACTGCTGTGTGTTTGGCGTAACTGCAAGCCTTGGGACAGGCAGAAGTTGTATGATCTACATTGCATCCTTG 2664
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2665 TCCTGGGCCTGCACTACACTGGAAACAGTATCACCACCTGTTCTTATACCAGTATTTGAGTCAAGCCTTGGTCG 2738
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2739 AGGAGGGACAGAAGAGAATCAGGCTAAAGTGCATAAAGAGGGCAGTAAGCGGGGGAGATAGACCTGCAGGGGAG 2812
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2813 AGGGTGTTGCCACGGGCGTCTCTCTCGACTCTTTACAGCACATTGGTGTGGTTCTAGGTTTACTTTGTACTGTT 2886
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2887 ATGCTGTTTACCTTCCTTAACAATTTTCTTTTTTGAGAATCTAAAAAAGAAAAAAATGGTGTTTTTTTCCCCTC 2960
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2961 CTGCACTGGGGCTACATTTTTCACTTATAAAAATATTTGATGGCCTTTTGATGAATGTCTTCCATAACGAATAA 3034
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3035 GAAAACCTAGTGGCTTAATTTAGGAAACATGTTAACAAGACACTGTTTTTGAAATTGTAACAAAGTCAACATAA 3108
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3109 GTGATTTACAGGTACAAAGAATAAAAATAAAGGTAACTTTACCTTTCTTAAATACTTCCTGCCTTAAGGAGCAT 3182
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3183 TTCCATGACTAGCTGGTGAAAGGGTTTAATATCTGCAGAGCTTTATAAAATATACTGCAGTGCATACTGGTCTA 3256
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3257 GGTAGATGGTCACACAGTGAGTCCTGTCACGCCACTCTGTTGGTCTTTTTTGTCTTGGTAATAGTTGCAGCCCT 3330
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3331 TGGGTTTCTTTATGCAGATGCTCTTGCTGTGTTCCTCAAAGGATCCAAGCCATAAAATTCTTTATGCATGTCAC 3404
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3405 AGTCAGGATTGACCCAGACCTTGCTTATTCAAATTGTAATTGAAGTGAGATGGGAAGAAATGTTAACAGTGAGC 3478
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3479 AAAAATAGAACCTTGAGAGGCTGGAGAGATGACTCAGCAGTTAAGAACTCTGGCTACTTTTCCAGAGGTCCTGA 3552
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3553 GTTCAATCCCAGCACCCACATGATAGCTTACATCTATAAACTGTAGTCTCGTTGGATCAAATGTTCTCTTACAT 3626
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3627 GCACATGTGCAGACAAAACATCCACATACATAAAAATCTTAAAAAAAAAAAACAAAAAAAAAAAACCAGAGCCA 3700
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3701 TGGCAGATGACTGGAAATACTGCCCTTCAATTGTGGCAGCAAACGTCCATCTGGACAGAGAATTTCTTTTTTTA 3774
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3775 TCATTTAAATGGTCATTCCTGATTCTCTTGACTGTAGCAGCATTTTGAGAACTTCATAATTGTAGCAGTAAATT 3848
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3849 AGGAGCTGCAGTAATGATTAAGAATGTTCTTCATTCTTTGAGAGTTTGTGGTATCTTAAAAAATAGAACCCCTC 3922
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3923 AAAAAACCTATGGCAATGCATTATAGGAATCATTTCAGACTGCAAATGGCTTGTGCTACTCTGATATCTGTTTC 3996
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3997 TAAATGTGTTTACTAACTATAGCGTTGACTGCCTGGCCAAATTCCAATAAAACTTTTACACTAAATGATTCCTC 4070
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4071 CTTAGCCCTAGTTGCTAGTAATATGTGCACTGTGACCACCCCATAAACTGTTAATAAACTGTTCATAGAATTAC 4144
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4145 TGCCAGCAATAGTGGCAAATATCGCAACGTTTTTGTGTAGAACGCATTAATTGTACACCTTCTGTCGACTTCCA 4218
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4219 TCTACACAAATATATAGCTTTTCTATCACAACATTAAGTGAAATTGATGCTGTGGCAAGTTTATTGAGAAACTT 4292
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4293 TCATAAATGGATATCCCTACTATGACTGTGAAAACATGTCAGGTGTCACATGAGTGTCACAGACAGAAAGCACA 4366
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4367 TGCCTATGCAATATGGCCTACTCTGTATTTATTTGTAAAAACTGAAGCATAATTTAAAGTGTATATCAATACTA 4440
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4441 CTCTGAGTTTCTAAGAGAGGTGTTCATGCTTGTACCAGGTAAGTGAATAAAAAAAAAGATTAAGTGCTTTTTCT 4514
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4515 TTCATTACTTGATTATTTTCTTTAAAATCAGCTATTACAGGATATTTTTTTATTTTCTACATTCTGTTTTTTAA 4588
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4589 TTAATATGTACTCACTGAACTGAAATTTACTAAATTTGTTTTATAAGGTTTGTAGTGTTACAGAATAACTAAAC 4662
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4663 TGGGATTTATAAACCAGCTGTGATTAACAATGTATTAATTATTTGAACTTGAACCAGACCATTAGGAAAATTAT 4736
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4737 GTTATTTGTTCCCCTTGTATGCTCTTAACTTAAAGAATTTTCCCACATACCGTTTTTGAGATAGTTTGAGATTT 4810
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4811 GAGGATAGGATGCATGTGAGAGACTCCATAAATTCAACATTCTGTACTATAGCTGACAACTATAAACAAAATGT 4884
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4885 ATCTTAGCATTAATATCTTGAGCCTTGAACATCATATTTAATACAGGACCATTTTAGAAATATTCAGTTAGTTG 4958
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4959 TATATTTCCTAGGTTACAAGGGCTAGATCTAAGATTATTCTCATGAGAAATGTTGAATTTATGAGAAATGGATT 5032
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5033 TTGAGGCTTTGAAAATGAAAATGGCTAGTATCTCAAAGATGTCAGTATCCATACATCTATGGTTTCATCCCAGG 5106
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5107 AGCAGACATTAGCTAGCTGGACAAACAGTTGTGACAATATTTGTCACATAGGGGCCTATGGTTTGTTGCTCAAC 5180
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5181 AATATAGTACTTTTCTCATGTGACTCAACACTATAGCACAAGTATTATTTCCCTGGATTCTCTGAAGGAGCATC 5254
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5255 TAAAAGACGGGTTTCTGACAGTGTTTGCTCTTTAAACTATGTTTTCTCCTACCCCAAGTTGGCTTTGCATCTAT 5328
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 5329 TAAATAAGTTCTTCAGCTGCCTTACTAGGAGTTCTACGAGGGCAACATCTTTTCTGCATTTCACCTTGTATTTA 5402
Query 1354 ------------------------------------------------------------------------ 1353
Sbjct 5403 GTTTACTGTGTTAAGATATTTGATTTCAGATTGAATGAATGTAAATAGAAATTAAATGCAAATTTGAATGAA 5474
