Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14833
- Subject:
- XR_879743.2
- Aligned Length:
- 4426
- Identities:
- 1282
- Gaps:
- 3073
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GAGCCAGTCTGGGGCCTAGGCGCAGACGCATTGAGCTTAAGCAGCCGGTGATGGCGGCAGCAGCCGTGGAGTCT 74
Query 1 -----------------ATGAGGCGACGAAGGAGGCGGGACGGCTTTTACCCAGCCCCGGACTTCCGAGACAGG 57
||||||||||||.|||||||||||||||||||||.|||.||.|||||||||.|||||
Sbjct 75 GCGGCGGGTCCGGGCCCATGAGGCGACGACGGAGGCGGGACGGCTTTTACCTAGCGCCTGACTTCCGACACAGG 148
Query 58 GAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAGGACGCGGGCTCTGAGGATGAGCT 131
||||||||||||||||||||||||||||||||||||||||||||||||||.||.||.|||||||||||||||||
Sbjct 149 GAAGCTGAGGACATGGCAGGAGTGTTTGACATAGACCTGGACCAGCCAGAAGATGCAGGCTCTGAGGATGAGCT 222
Query 132 GGAGGAGGGGGGTCAGTTAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATT 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 GGAGGAGGGGGGTCAGTTAAATGAAAGCATGGACCATGGGGGAGTTGGACCATATGAACTTGGCATGGAACATT 296
Query 206 GTGAGAAATTTGAAATCTCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTA 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 GTGAGAAATTTGAAATCTCAGAAACTAGTGTGAACAGAGGGCCAGAAAAAATCAGACCAGAATGTTTTGAGCTA 370
Query 280 CTTCGGGTACTTGGTAAAGGGGGCTATGGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CTTCGGGTACTTGGTAAAGGGGGCTATGGAAAGGTTTTTCAAGTACGAAAAGTAACAGGAGCAAATACTGGGAA 444
Query 354 AATATTTGCCATGAAGGTGCTTAAAAAGGCAATGATAGTAAGAAATGCTAAAGATACAGCTCATACAAAAGCAG 427
.||||||||||||||||||||||||||||||||||||||.||.||||||||.||.||.||.||.||.|||||||
Sbjct 445 GATATTTGCCATGAAGGTGCTTAAAAAGGCAATGATAGTGAGGAATGCTAAGGACACGGCCCACACGAAAGCAG 518
Query 428 AACGGAATATTCTGGAGGAAGTAAAGCATCCCTTCATCGTGGATTTAATTTATGCCTTTCAGACTGGTGGAAAA 501
|.|||||.||||||||||||||.||.||.||.|||||.|||||..|.|||||||||||||||||.||.|||||.
Sbjct 519 AGCGGAACATTCTGGAGGAAGTGAAACACCCTTTCATTGTGGACCTGATTTATGCCTTTCAGACCGGAGGAAAG 592
Query 502 CTCTACCTCATCCTTGAGTATCTCAGTGGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTTATGGA 575
||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 593 CTCTACCTCATCCTCGAGTATCTCAGTGGAGGAGAACTATTTATGCAGTTAGAAAGAGAGGGAATATTCATGGA 666
Query 576 AGACACTGCCTGCTTTTACTTGGCAGAAATCTCCATGGCTTTGGGGCATTTACATCAAAAGGGGATCATCTACA 649
||||||.||.||||||||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||
Sbjct 667 AGACACAGCGTGCTTTTACTTGGCTGAAATCTCCATGGCTTTGGGGCATTTACATCAAAAAGGGATCATCTACA 740
Query 650 GAGACCTGAAGCCGGAGAATATCATGCTTAATCACCAAGGTCATGTGAAACTAACAGACTTTGGACTATGCAAA 723
|||||||||||||||||||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||
Sbjct 741 GAGACCTGAAGCCGGAGAACATCATGCTTAATCACCAAGGTCACGTGAAACTAACAGACTTTGGACTATGCAAA 814
Query 724 GAATCTATTCATGATGGAACAGTCACACACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTGAT 797
||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 815 GAATCTATTCATGATGGAACAGTCACGCACACATTTTGTGGAACAATAGAATACATGGCCCCTGAAATCTTAAT 888
Query 798 GAGAAGTGGCCACAATCGTGCTGTGGATTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCA- 870
||||||.||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GAGAAGCGGCCACAACCGTGCTGTGGATTGGTGGAGTTTGGGAGCATTAATGTATGACATGCTGACTGGAGCAG 962
Query 871 ---CCCCCATTCACTGGGGAGAATAGAAAGAAAACAATTGACAAAATCCTCAAATGTAAACTCAATTTGCCTCC 941
||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||
Sbjct 963 TAGCCTCCATTCACTGGGGAGAATAGAAAGAAAACAATTGACAAAATCCTCAAATGTAAACTTAATTTGCCTCC 1036
Query 942 CTACCTCACACAAGAAGCCAGAGATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTGGGAGCTG 1015
||||||||||||||||||..||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 1037 CTACCTCACACAAGAAGCTCGAGATCTGCTTAAAAAGCTGCTGAAAAGAAATGCTGCTTCTCGTCTTGGAGCTG 1110
Query 1016 GTCCTGGGGACGCTGGAGAAGTTCAAGCTCATCCATTCTTTAGACACATTAACTGGGAAGAACTTCTGGCTCGA 1089
|.||||||||.|||||||||||.|||||||||||.||.||.||||||||||||||||||||||||||||||||.
Sbjct 1111 GCCCTGGGGATGCTGGAGAAGTCCAAGCTCATCCTTTTTTCAGACACATTAACTGGGAAGAACTTCTGGCTCGG 1184
Query 1090 AAGGTGGAGCCCCCCTTTAAACCTCTGTTGCAATCTGAAGAGGATGTAAGTCAGTTTGATTCCAAGTTTACACG 1163
||||||||.||.||||||||.||||||||||||||||||||||||||.||||||||||||||.|||||||||||
Sbjct 1185 AAGGTGGAACCTCCCTTTAAGCCTCTGTTGCAATCTGAAGAGGATGTGAGTCAGTTTGATTCAAAGTTTACACG 1258
Query 1164 TCAGACACCTGTCGACAGCCCAGATGACTCAACTCTCAGTGAAAGTGCCAATCAGGTCTTTCTGGGTTTTACAT 1237
||||||||||||.||||||||.||||||||.||||||||||||||||||||.||||||||||||||||||||||
Sbjct 1259 TCAGACACCTGTTGACAGCCCTGATGACTCCACTCTCAGTGAAAGTGCCAACCAGGTCTTTCTGGGTTTTACAT 1332
Query 1238 ATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCCTTTGAACCAAAAATCCGATCACCTCGAAGA 1311
|||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||.|||.|||||
Sbjct 1333 ATGTGGCTCCATCTGTACTTGAAAGTGTGAAAGAAAAGTTTTCATTTGAACCAAAAATCCGATCTCCTAGAAGA 1406
Query 1312 TTTATTGGCAGCCCACGAACACCTGTCAG---------------TACTG--------------CTATGTGC--- 1353
||||||||.||.||||||||||||||||| |.||| |.|.||||
Sbjct 1407 TTTATTGGTAGTCCACGAACACCTGTCAGCCCAGTCAAATTCTCTCCTGGGGATTTCTGGGGACGAGGTGCTTC 1480
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1481 AGCCAGCACGGCAAATCCTCAGACCCCTGTGGAATACCCAATGGAAACAAGTGGGATAGAGCAGATGGATGTGA 1554
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1555 CAGTGAGCGGGGAAGCATCAGCGCCACTTCCAATCCGACAACCCAACTCCGGGCCGTACAAAAAACAAGCTTTT 1628
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1629 CCTATGATCTCCAAACGGCCAGAGCACCTGCGGATGAATCTATGATGAAACAATGCTTTTATTAATGCAAAATC 1702
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1703 AAAAAGGAAACAAATCCGGGAAGGGGATGTGTGAGCATCCTGCAATATAAAAACAAGAATAAAATGGCAGTCTC 1776
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1777 AAAGAGTCAGTGTCATTACCTGGAATGCTTTCGATGGAGGAAAAAATAAACATGGATTTTAAAAAATCAATCAA 1850
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1851 AAATGGTGCAAAAAAAAAAATAAACCCACAAAAAACTCAAGCAAAATAGTATTGTGGAATCCACAGACACATCA 1924
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1925 GCTGACTGGTTCCTATCCTAGCAACATCTCGGCGTTCGCAAGGGTTCTCATGCTGATGGCTGCAAACTGACAGT 1998
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 1999 ATTAAGGGTAGGATGTTGCTTCGGAATCACCGTTGAAATCTGATGATGTCAAATAAGGGTTATCCTAATAGGCA 2072
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2073 AAGTTTGAGATTGCCTGTAATACTTGCAACTAAGGACAAATTAGCATGCAAGCTTTGTCAAACTTTTTCCAGCA 2146
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2147 ACACAGAATCAAAGACAAAAGAAACTTTATCGATTGATGTTTTACGTGCAAACAACCTGAATCTTTTTTTTATA 2220
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2221 TAAATATATATTTTTCAAATAGATTTTTGATTCAGCTCATTATGAAAAACATCCCAAACTTTAAAATGCGAAGT 2294
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2295 TATTGGTTGGTGTGAAGAAAGCCAGCTTCTGTCTTCTCTTGATGAAATAAAATGCAAATGATCATTGTTAACCA 2368
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2369 CAGCTGTGGCTTGTCTGAGGGCCTGGGGTGGACCTGGGGTGTTTTTTTAATCTTTTTGTTTTAGTAACCTAGCT 2442
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2443 GCAATACTTGTCTGTAATACTAGGGGGGAAAAGTCTGTTTAATCATTTTTACTTGCAGTACTGCTGTGTGTTTG 2516
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2517 GCGTAACTGCAAGCCTTGGGACAGGCAGAAGTTGTATGATCTACATTGCATCCTTGTCCTGGGCCTGCACTACA 2590
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2591 CTGGAAACAGTATCACCACCTGTTCTTATACCAGTATTTGAGTCAAGCCTTGGTCGAGGAGGGACAGAAGAGAA 2664
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2665 TCAGGCTAAAGTGCATAAAGAGGGCAGTAAGCGGGGGAGATAGACCTGCAGGGGAGAGGGTGTTGCCACGGGCG 2738
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2739 TCTCTCTCGACTCTTTACAGCACATTGGTGTGGTTCTAGGTTTACTTTGTACTGTTATGCTGTTTACCTTCCTT 2812
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2813 AACAATTTTCTTTTTTGAGAATCTAAAAAAGAAAAAAATGGTGTTTTTTTCCCCTCCTGCACTGGGGCTACATT 2886
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2887 TTTCACTTATAAAAATATTTGATGGCCTTTTGATGAATGTCTTCCATAACGAATAAGAAAACCTAGTGGCTTAA 2960
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 2961 TTTAGGAAACATGTTAACAAGACACTGTTTTTGAAATTGTAACAAAGTCAACATAAGTGATTTACAGGTACAAA 3034
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3035 GAATAAAAATAAAGGTAACTTTACCTTTCTTAAATACTTCCTGCCTTAAGGAGCATTTCCATGACTAGCTGGTG 3108
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3109 AAAGGGTTTAATATCTGCAGAGCTTTATAAAATATACTGCAGTGCATACTGGTCTAGGTAGATGGTCACACAGT 3182
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3183 GAGTCCTGTCACGCCACTCTGTTGGTCTTTTTTGTCTTGGTAATAGTTGCAGCCCTTGGGTTTCTTTATGCAGA 3256
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3257 TGCTCTTGCTGTGTTCCTCAAAGGATCCAAGCCATAAAATTCTTTATGCATGTCACAGTCAGGATTGACCCAGA 3330
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3331 CCTTGCTTATTCAAATTGTAATTGAAGTGAGATGGGAAGAAATGTTAACAGTGAGCAAAAATAGAACCTTGAGA 3404
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3405 GGCTGGAGAGATGACTCAGCAGTTAAGAACTCTGGCTACTTTTCCAGAGGTCCTGAGTTCAATCCCAGCACCCA 3478
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3479 CATGATAGCTTACATCTATAAACTGTAGTCTCGTTGGATCAAATGTTCTCTTACATGCACATGTGCAGACAAAA 3552
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3553 CATCCACATACATAAAAATCTTAAAAAAAAAAAACAAAAAAAAAAAACCAGAGCCATGGCAGATGACTGGAAAT 3626
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3627 ACTGCCCTTCAATTGTGGCAGCAAACGTCCATCTGGACAGAGAATTTCTTTTTTTATCATTTAAATGGTCATTC 3700
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3701 CTGATTCTCTTGACTGTAGCAGCATTTTGAGAACTTCATAATTGTAGCAGTAAATTAGGAGCTGCAGTAATGAT 3774
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3775 TAAGAATGTTCTTCATTCTTTGAGAGTTTGTGGTATCTTAAAAAATAGAACCCCTCAAAAAACCTATGGCAATG 3848
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3849 CATTATAGGAATCATTTCAGACTGCAAATGGCTTGTGCTACTCTGATATCTGTTTCTAAATGTGTTTACTAACT 3922
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3923 ATAGCGTTGACTGCCTGGCCAAATTCCAATAAAACTTTTACACTAAATGATTCCTCCTTAGCCCTAGTTGCTAG 3996
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 3997 TAATATGTGCACTGTGACCACCCCATAAACTGTTAATAAACTGTTCATAGAATTACTGCCAGCAATAGTGGCAA 4070
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4071 ATATCGCAACGTTTTTGTGTAGAACGCATTAATTGTACACCTTCTGTCGACTTCCATCTACACAAATATATAGC 4144
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4145 TTTTCTATCACAACATTAAGTGAAATTGATGCTGTGGCAAGTTTATTGAGAAACTTTCATAAATGGATATCCCT 4218
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4219 ACTATGACTGTGAAAACATGTCAGGTGTCACATGAGTGTCACAGACAGAAAGCACATGCCTATGCAATATGGCC 4292
Query 1354 -------------------------------------------------------------------------- 1353
Sbjct 4293 TACTCTGTATTTATTTGTAAAAACTGAAGCATAATTTAAAGTGTATATCAATACTACTCTGAGTTTCTAAGAGA 4366
Query 1354 ------------------------------------------------------------ 1353
Sbjct 4367 GGTGTTCATGCTTGTACCAGGTAAGTGAATAAAAAAAAAGATTAAGTGCTTTTTCTTTCA 4426
