Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_14921
- Subject:
- NM_009071.2
- Aligned Length:
- 4062
- Identities:
- 449
- Gaps:
- 3562
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTCGACTGGGGACAGTTTTGAGACTCGGTTTGAAAAAATCGACAACCTGCTGCGGGATCCCAAATCGGAAGT 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GAATTCAGATTGTTTGCTGGATGGATTGGATGCCCTGGTTTATGATTTGGATTTTCCTGCCTTAAGAAAAAACA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAATATTGACAACTTTCTAAGCAGATATAAAGACACAATAAATAAAATTAGAGATTTACGGATGAAAGCAGAA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GATTATGAAGTGGTAAAGGTAATCGGCAGAGGTGCATTTGGAGAAGTTCAATTGGTGAGGCATAAATCCACTAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAAGGTTTATGCTATGAAGCTGCTCAGCAAATTTGAAATGATTAAGAGATCGGATTCTGCTTTTTTCTGGGAAG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 AAAGGGACATCATGGCGTTTGCCAATAGTCCTTGGGTTGTTCAGCTTTTTTATGCATTCCAAGATGACCGGTAT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CTCTACATGGTGATGGAGTACATGCCTGGCGGAGACCTTGTCAACCTGATGAGCAACTATGACGTGCCTGAAAA 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 ATGGGCAAGATTCTATACTGCAGAAGTAGTTCTTGCATTGGATGCAATCCATTCCATGGGTTTTATTCATAGAG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 ATGTAAAGCCTGATAACATGCTGCTGGATAAGTCTGGACATTTGAAGTTAGCAGATTTTGGTACTTGTATGAAG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ATGAATAAGGAAGGTATGGTACGATGTGACACAGCAGTTGGAACACCTGATTATATCTCACCCGAAGTATTAAA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 ATCCCAAGGCGGTGATGGCTATTATGGACGAGAGTGTGACTGGTGGTCAGTTGGGGTATTTCTATATGAAATGC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 TCGTAGGTGACACACCTTTCTATGCAGATTCTTTGGTTGGGACTTACAGTAAAATTATGAACCATAAAAATTCA 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 CTTACTTTCCCTGATGATAATGACATATCAAAAGAGGCAAAAAATCTCATTTGTGCCTTCCTTACAGACAGAGA 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 AGTGAGATTGGGCAGAAATGGTGTAGAGGAAATCAAACGTCATCTCTTCTTCAAAAATGATCAGTGGGCTTGGG 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AAACGCTCCGAGACACTGTAGCACCAGTTGTGCCTGATTTAAGTAGTGACATTGATACTAGTAATTTTGATGAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 TTAGAAGAAGATAAAGGAGATGAAGAAACATTTCCTATTCCAAAAGCTTTTGTTGGCAATCAGCTACCTTTTGT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 AGGATTTACATATTATAGCAATCGTAGATACTTACCTTCAGCAAATGCCAGTGAGAACAGATCTAGCTCCAATG 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 TGGATAAAAGCTTGCAGGAAAGTTTACAGAAAACAATCTACAAGCTTGAAGAGCAACTGCATAATGAAATGCAA 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTAAAAGATGAAATGGAGCAGAAATGCAGAACTTCAAACTTAAAACTAGACAAGATAATGAAAGAATTGGATGA 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGAGGGGAATCAAAGAAGAAATCTAGAATCTGCAGTGTCTCAAATTGAGAAAGAAAAGATGTTGCTACAACATA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 GAATTAATGAGTACCAAAGAAAAGTGGAACAGGAAAATGAGAAGAGAAGAAATATAGAAAATGAAGTTTCTACA 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CTAAAGGACCAGTTAGAAGACTTACGGAAAGCAAGTCAGACCTCACAGCTTGCTAATGAGAAGCTGACACAGTT 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 ACAGAAGCAGTTAGAAGAAGCGAATGACTTACTTAGGACAGAATCAGACACAGCTGTAAGATTAAGGAAGAGTC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 ACACAGAGATGAGCAAGTCAATTAGTCAGCTAGAGTCCCTGAACAGAGAATTACAGGAAAGAAACAGAATTTTA 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GAGAATTCCAAGTCACAAGCAGACAAGGATTACTACCAGCTGCAAGCTGTATTGGAAGCTGAGCGAAGAGACAG 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 AGGGCATGATTCTGAGATGATTGGAGACCTTCAAGCACGAATTACATCTTTACAAGAAGAAGTGAAACATCTCA 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AACATAATCTTGAAAGAGTGGAAGGAGAAAGAAAAGAGGCTCAAGACATGCTTAATCATTCAGAAAAGGAAAAG 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AATAATTTGGAGATAGATTTGAATTACAAGCTCAAGTCTATACAACAGCGGTTAGAACAAGAAGTAAATGAACA 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 TAAAGTCACCAAAGCACGCCTAACTGACAAGCACCAATCTATCGAAGAGGCAAAGTCTGTTGCCATGTGTGAAA 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 TGGAAAAAAAGCTGAAGGAAGAGAGAGAAGCTCGAGAGAAGGCAGAAAATAGAGTTGTTGAGACTGAGAAACAA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TGTTCCATGCTAGATGTTGACCTGAAACAGTCTCAGCAGAAGCTAGAACATTTGACCGAAAATAAAGAAAGGAT 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GGAGGATGAAGTTAAGAATCTCGCCCTGCAGCTGGAACAGGAATCAAATAAACGGCTCTTGTTACAGAATGAAT 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 TGAAGACTCAAGCATTTGAAGCAGACAATTTAAAAGGTTTAGAAAAACAGATGAAACAGGAAATAAATACTTTA 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTGGAAGCAAAGAGATTGTTAGAATTTGAGTTAGCTCAGCTTACAAAGCAATATAGGGGAAATGAAGGGCAAAT 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 GCGGGAGTTACAAGATCAACTTGAAGCTGAGCAGTATTTCTCTACACTTTATAAAACCCAAGTAAAGGAGCTTA 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 AAGAAGAAATTGAAGAAAAAAACCGAGAAAATTTAAGGAAAATACAGGAACTGCAAAGTGAAAAAGAAACTCTC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TCTACTCAGTTGGATTTAGCAGAAACAAAAGCTGAGTCTGAGCAGCTGGCGCGAGGGATTCTGGAAGAACAGTA 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 TTTTGAGTTGACTCAGGAAAGCAAGAAAGCTGCTTCAAGAAATAGACAAGAGATTACAGATAAAGATCATACTG 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 TTAGTCGGCTTGAAGAAACAAACAGTGTGCTAACCAAAGATATTGAAATGCTAAGAAAAGAAAATGAAGAGCTA 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 AATGAAAGAATGAGGACAGCAGAAGAAGAATATAAATTGAAGAAGGAGGAAGAAATAAATAATCTTAAGGCTGC 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 TTTTGAAAAGAATATCAGTACCGAACGGACCCTTAAAACACAGGCTGTTAACAAGTTGGCAGAAATAATGAATC 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 GCAAAGATTTTAAAATTGATCGAAAGAAAGCTAATACACAAGATTTAAGAAAAAAAGAAAAGGAAAATAGAAAG 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 CTACAACTGGAACTTAACCAAGAGAGAGAAAAATTTAACCAAATGGTGGTGAAACACCAGAAGGAGCTGAATGA 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 CATGCAAGCGCAATTGGTAGAAGAATGTACACATAGAAATGAACTTCAAATGCAGTTGGCTAGCAAAGAGAGTG 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 ATATTGAGCAGTTGCGGGCAAAACTTTTGGACCTTTCGGATTCAACTAGTGTTGCTAGTTTTCCTAGTGCAGAT 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 GAAACTGATGGAAACCTTCCAGAGTCAAGAATTGAAGGTTGGCTTTCTGTACCAAATAGAGGAAATATCAAAAG 3404
Query 1 ----------------------------------------------ATGGCCTATATTTAT------------- 15
.||..|||||.|.||
Sbjct 3405 ATATGGCTGGAAGAAACAGTATGTTGTGGTAAGCAGCAAAAAGATCTTGTTCTATAATGATGAACAAGATAAGG 3478
Query 16 ----------------TTTCATTTTAG-------TAAACTGTTTCACGTTAGACCTGTAACCCAAGGAGATGTG 66
|.|..|.|||| ||||.|||||||.||..|||||||||||||||||||||||
Sbjct 3479 AACAATCCAGTCCATCTATGGTGTTAGACATAGATAAATTGTTTCATGTCCGACCTGTAACCCAAGGAGATGTG 3552
Query 67 TATAGAGCTGAAACTGAAGAAATTCCTAAAATATTCCAGATACTATATGCAAATGAAGGTGAATGTAGAAAAGA 140
||.|||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3553 TACAGAGCAGAAACTGAAGAAATTCCTAAAATATTCCAGATACTATATGCAAATGAAGGTGAATGTAGAAAAGA 3626
Query 141 TGTAGAGATGGAACCAGTACAAGAAGCTGAAAAAACTAATTTCCAAAATCACAAAGGCCATGAGTTTATTCCTA 214
|.||||..|||||||.||.|||.|||.||||||||||||||||||.|||||||||||||||||.||.|||||||
Sbjct 3627 TATAGAAGTGGAACCGGTTCAACAAGGTGAAAAAACTAATTTCCAGAATCACAAAGGCCATGAATTCATTCCTA 3700
Query 215 CACTCTACCACTTTCCTGCCAATTGTGATGCCTGTGCCAAACCTCTCTGGCATGTTTTTAAGCCACCCCCTGCC 288
|.||||||||||||||||||||.|||||.|||||||||||||||.|.||||||||.|||||||||||.||||||
Sbjct 3701 CCCTCTACCACTTTCCTGCCAACTGTGAGGCCTGTGCCAAACCTTTGTGGCATGTCTTTAAGCCACCACCTGCC 3774
Query 289 CTAGAGTGTCGAAGATGCCATGTTAAGTGCCACAGAGATCACTTAGATAAGAAAGAGGACTTAATTTGTCCATG 362
||||||||||||||||||||||||||||||||||||||.||..||||.||||||||||||||.||||..||.||
Sbjct 3775 CTAGAGTGTCGAAGATGCCATGTTAAGTGCCACAGAGACCATCTAGACAAGAAAGAGGACTTGATTTCCCCGTG 3848
Query 363 TAAAGTAAGTTATGATGTAACATCAGCAAGAGATATGCTGCTGTTAGCATGTTCTCAGGATGAACAAAAAAA-T 435
.|||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 3849 CAAAGTAAGTTACGATGTAACATCAGCAAGAGATATGCTGCTGTTAGCATGTTCTCAGGATGAACAAAAAAAGT 3922
Query 436 GGGTAACTCATTTAGTAAAGAAAATCCCTAAGAATCCACCATCTGGTTTTGTTCGTGCTTCCCCT--------- 500
||||.||||||.||||||||||.||.||||||||.|||||||||||.|||||.|||||.||.|||
Sbjct 3923 GGGTTACTCATCTAGTAAAGAAGATTCCTAAGAACCCACCATCTGGCTTTGTCCGTGCCTCTCCTCGAACGCTG 3996
Query 501 ------------------------------------------------------------------ 500
Sbjct 3997 TCAACAAGATCCACTGCAAATCAGTCTTTCCGCAAAGTAGTCAAAAATACATCTGGAAAAACTAGT 4062
