Nucleotide Global Alignment

Description

Query:
ccsbBroad304_14996
Subject:
NM_001040106.2
Aligned Length:
2881
Identities:
1292
Gaps:
1462

Alignment

Query    1  ATGAAGAAGTTTTTCGACTCCCGGCGAGAGCAGGGCGGCTCTGGCCTGGGCTCCGGCTCCAGCGGAGGAGGGGG  74
            |||||||||||||||||||||.||||.||||||||..|||||||||||||.||.||||||||||||||||||||
Sbjct    1  ATGAAGAAGTTTTTCGACTCCAGGCGGGAGCAGGGGAGCTCTGGCCTGGGTTCAGGCTCCAGCGGAGGAGGGGG  74

Query   75  CAGCACCTCGGGCCTGGGCAGTGGCTACATCGGAAGAGTCTTCGGCATCGGGCGACAGCAGGTCACAGTGGACG  148
            |||||.|||.||||||||||||||.|||||||||||.|||||||||||||||.|.|||||||||||.|||||||
Sbjct   75  CAGCAGCTCAGGCCTGGGCAGTGGTTACATCGGAAGGGTCTTCGGCATCGGGAGGCAGCAGGTCACCGTGGACG  148

Query  149  AGGTGTTGGCGGAAGGTGGATTTGCTATTGTATTTCTGGTGAGGACAAGCAATGGGATGAAATGTGCCTTGAAA  222
            ||||||||||||||||||||||.|||.||||.|||||||||||.||||||||||||.|||||||||||||||||
Sbjct  149  AGGTGTTGGCGGAAGGTGGATTCGCTCTTGTCTTTCTGGTGAGAACAAGCAATGGGGTGAAATGTGCCTTGAAA  222

Query  223  CGCATGTTTGTCAACAATGAGCATGATCTCCAGGTGTGCAAGAGAGAAATCCAGATAATGAGGGATCTTTCAGG  296
            ||.|||||||||||||||||.|||||.|||||||||||||||||.||.||||||||.|||||.||.||.|||||
Sbjct  223  CGTATGTTTGTCAACAATGAACATGACCTCCAGGTGTGCAAGAGGGAGATCCAGATCATGAGAGACCTATCAGG  296

Query  297  GCACAAGAATATTGTGGGTTACATTGATTCTAGTATCAACAACGTGAGTAGCGGTGATGTATGGGAAGTGCTCA  370
            |||||||||.||||||||.|||||||||||||||||||||||.|||||.|||||.||.||.||||||||.||||
Sbjct  297  GCACAAGAACATTGTGGGCTACATTGATTCTAGTATCAACAATGTGAGCAGCGGCGACGTCTGGGAAGTTCTCA  370

Query  371  TTCTGATGGACTTTTGTAGAGGTGGCCAGGTGGTAAACCTGATGAACCAGCGCCTGCAAACAGGCTTTACAGAG  444
            ||||.||||||||.||.|||||.|||||||||||||||||||||||||||||.||.||.||||||||.||||||
Sbjct  371  TTCTCATGGACTTCTGCAGAGGAGGCCAGGTGGTAAACCTGATGAACCAGCGTCTCCAGACAGGCTTCACAGAG  444

Query  445  AATGAAGTGCTCCAGATATTTTGTGATACCTGTGAAGCTGTTGCCCGCCTGCATCAGTGCAAAACTCCTATTAT  518
            |||||||||||.||||||||.|||||.||||||||||||||.||||||||||||||||||||||||||.|||||
Sbjct  445  AATGAAGTGCTGCAGATATTCTGTGACACCTGTGAAGCTGTGGCCCGCCTGCATCAGTGCAAAACTCCCATTAT  518

Query  519  CCACCGGGACCTGAAGGTTGAAAACATCCTCTTGCATGACCGAGGCCACTATGTCCTGTGTGACTTTGGAAGCG  592
            ||||||||||||||||||||||||.||||||||||||||||||||||||||||||.||||||||||||||||.|
Sbjct  519  CCACCGGGACCTGAAGGTTGAAAATATCCTCTTGCATGACCGAGGCCACTATGTCTTGTGTGACTTTGGAAGTG  592

Query  593  CCACCAACAAATTCCAGAATCCACAAACTGAGGGAGTCAATGCAGTAGAAGATGAGATTAAGAAATACACAACG  666
            |||||||||||||||||||||||||..|.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCACCAACAAATTCCAGAATCCACAGGCCGAGGGAGTCAATGCAGTAGAAGATGAGATTAAGAAATACACAACG  666

Query  667  CTGTCCTATCGAGCACCAGAAATGGTCAACCTGTACAGTGGCAAAATCATCACTACGAAGGCAGACATTTGGGC  740
            ||.|||||||||||.|||||||||||||||.||||||||||||||||||||||||||||||||||.||||||||
Sbjct  667  CTCTCCTATCGAGCCCCAGAAATGGTCAACTTGTACAGTGGCAAAATCATCACTACGAAGGCAGATATTTGGGC  740

Query  741  TCTTGGATGTTTGTTGTATAAATTATGCTACTTCACTTTGCCATTTGGGGAAAGTCAGGTGGCAATTTGTGATG  814
            |||.||.|||||||||||||||||||||||||||||||||||.||||||||.||.||||||||.||||||||.|
Sbjct  741  TCTAGGCTGTTTGTTGTATAAATTATGCTACTTCACTTTGCCGTTTGGGGAGAGCCAGGTGGCGATTTGTGACG  814

Query  815  GAAACTTCACAATTCCTGATAATTCTCGATATTCTCAAGACATGCACTGCCTAATTAGGTATATGTTGGAACCA  888
            |||.||||||||||||||||||.|||||.|||||||||||.|||||||||||.|||||||||||||||||||||
Sbjct  815  GAAGCTTCACAATTCCTGATAACTCTCGTTATTCTCAAGATATGCACTGCCTTATTAGGTATATGTTGGAACCA  888

Query  889  GACCCTGACAAAAGGCCGGATATTTACCAGGTGTCCTACTTCTCATTTAAGCTACTCAAGAAAGAGTGCCCAAT  962
            ||||||||||||||||||||||||||||||||.||.||||||||||||||.||||||||||||||.|||||..|
Sbjct  889  GACCCTGACAAAAGGCCGGATATTTACCAGGTTTCATACTTCTCATTTAAACTACTCAAGAAAGAATGCCCCGT  962

Query  963  TCCAAATGTACAGAACTCTCCCATTCCTGCAAAGCTTCCTGAACCAGTGAAAGCCAGTGAGGCAGCTGCAAAAA  1036
            |||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||.|||||||..||||
Sbjct  963  TCCAAATGTACAGAACTCTCCCATTCCTGCAAAACTTCCTGAACCAGTGAAAGCCAGTGAAGCAGCTGTGAAAA  1036

Query 1037  AGACCCAGCCAAAGGCCAGACTGACAGATCCCATTCCCACCACAGAGACTTCAATTGCACCCCGCCAGAGGCCT  1110
            |||||||||||||||||||||||||.|||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1037  AGACCCAGCCAAAGGCCAGACTGACCGATCCCATTCCCACCACAGAGACTTCAATCGCACCCCGCCAGAGGCCT  1110

Query 1111  AAAGCTGGGCAGACTCAGCCGAACCCAGGAATCCTTCCCATCCAGCCAGCGCTGACACCCCGGAAGAGGGCCAC  1184
            ||||||||||||||||||||.||||||||.||||||||||||||||||||.|||||.||.||||||||||||||
Sbjct 1111  AAAGCTGGGCAGACTCAGCCAAACCCAGGCATCCTTCCCATCCAGCCAGCCCTGACTCCTCGGAAGAGGGCCAC  1184

Query 1185  TGTTCAGCCCCCACCTCAGGCTGCAGGATCCAGCAATCAGCCTGGCCTTTTAGCCAGTGTTCCCCAACCAAAAC  1258
            |||||||||||.||||||||||||||||.||||||||||||||||.|||.||.||||||||.|||||||.|||.
Sbjct 1185  TGTTCAGCCCCTACCTCAGGCTGCAGGACCCAGCAATCAGCCTGGACTTCTACCCAGTGTTTCCCAACCTAAAG  1258

Query 1259  CCCAAGCCCCACCCAGCCAGCCTCTGCCGCAAACTCAGGCCAAGCAGCCACAGGCTCCTCCCACTCCACAGCAG  1332
            ||||||||.|||||||.||.|||||.|.|..|.||||..|||||||.|||||.|||||.|||||.|||||||||
Sbjct 1259  CCCAAGCCACACCCAGTCAACCTCTTCAGTCATCTCAACCCAAGCAACCACAAGCTCCACCCACCCCACAGCAG  1332

Query 1333  ACGCCTTCTACTCAGGCCCAGGGTCTGCCCGCTCAGGCCCAGGCCACACCCCAGCACCAGCAGCATACA-----  1401
            ||.|||.||||.|||.|.||.|||.|||||.|.||||||||||||||.||||||||||||||||| |||     
Sbjct 1333  ACACCTGCTACCCAGACACAAGGTTTGCCCACCCAGGCCCAGGCCACTCCCCAGCACCAGCAGCA-ACACCTCC  1405

Query 1402  --ATAAAACTTAGTATGAAACTTT--------------------------------------------------  1423
              |...|||  ||.| |.|||...                                                  
Sbjct 1406  TCAAGCAAC--AGCA-GCAACAGCAGCAACAGCCTCAGCAGCCTACAGCACCACCACAGCCTGCAGGCACCTTT  1476

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 1477  TACCAGCAGCAGCAGCAACAGCAGCAGCAGCAGGCTCAGACTCAGCAGTTTCAGGCAGTACATCCAGCAGCCCA  1550

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 1551  GCAACCAGTCACTGCTCAGTTCCCTGTGGGGTCCCAGGGAGGTGCTCAGCAACAGCTGATGCAGAACTTCTACC  1624

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 1625  ACCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCTGATGGCTCAGCAGGCTGCCCTGCAGCAGAAGACTGCT  1698

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 1699  GTGGTAGTACCACAGTCTCAGGCACAGCCCGCCACAGCCCCACAGGCAGCTGCTGCCCAGGAGCCTGGGCAGAT  1772

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 1773  TCAAGCCCCAGTGAGACAACAGCCAAAAGTTCAGACCACTCCACCTCCAACCATCCAGGGACAGAAAGTTGGAT  1846

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 1847  CTCTCACTCCTCCATCATCACCCAAAACCCAACGTGCTGGGCACAGACGGATTCTCAGTGATGTAACCCACAGT  1920

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 1921  GCAGTCTTTGGGGTTCCTGCCAGCAAATCAACCCAGCTGCTCCAGGCAGCTGCAGCTGAGGCCAGTCTCAATAA  1994

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 1995  ATCTAAGTCTGCAACCACCACTCCCTCAGGCTCTCCACGGACTTCACAGCAGAATGTCTCCAATGCTTCAGAAG  2068

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 2069  GCTCCACATGGAATCCTTTTGATGACGACAACTTCTCCAAACTCACAGCTGAAGAGCTGCTAAACAAGGACTTT  2142

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 2143  GCCAAGCTTGGGGAAGGAAAGCTGCCTGAGAAGCTTGGTGGCTCTGCAGAGAGTTTGATCCCAGGCTTCCAGCC  2216

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 2217  AACACAAGGAGATGCCTTCACCACTCCTTCTTTTTCTGCTGGAACTGCTGAAAAAAGGAAGGGGGGCCAGGCTG  2290

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 2291  TGGACTCTGGCATCCCACTTCTAAGTGTGTCTGATCCCTTCATTCCTCTTCAAGTACCTGATGCTCCAGAAAAA  2364

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 2365  CTAATCGAGGGACTCAAATCTCCTGACACTTCTCTTCTGCTCCCTGACCTCTTGCCTATGACAGATCCTTTTGG  2438

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 2439  CAGCACTTCTGATGCTGTTATTGACAAAGCTGATGTTGCTGTTGAGAGTCTCATACCTGGACTGGAGCCACCTG  2512

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 2513  TTGCTCAGCGCCTCCCATCTCAAACGGAATCTGTGACCTCGAACCGCACAGACTCTCTCACGGGGGAAGACTCT  2586

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 2587  CTGCTTGACTGCTCTCTGCTTTCTAACCCTACTGCTGGCCTTCTGGAGGAGTTTGCCCCCATAGCACTCTCTGC  2660

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 2661  TCCCACTCATAAAGCTGCAGAAGATAGCAATCTCATCTCAGGTTTTGGTGTTGCTGAGGGCTCCGAAAAGGTGG  2734

Query 1424  --------------------------------------------------------------------------  1423
                                                                                      
Sbjct 2735  CAGAAGATGAGTTTGACCCTATTCCTGTACTAATTACCAAAAACACACAAGGTGGGCACTCTAGGAACAGCAGT  2808

Query 1424  ---------------------------------------------------------------------  1423
                                                                                 
Sbjct 2809  GGGAGCTCTGAGTCCAGTCTTCCCAACCTAGCCAGGTCTTTGCTGCTGGTGGATCAGCTCATAGACCTG  2877

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