Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15089
- Subject:
- XR_001737469.1
- Aligned Length:
- 3922
- Identities:
- 1684
- Gaps:
- 2165
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AGGGGTGTGTGTTTCGCCTGCGCAGTGGTCCTGGCCACCGGCTCGCGGCGCGTGGAGGCTGCTCCCAGCCGCGC 74
Query 1 --------------------------------------------------------ATGTCGTGGCTCTTCGGC 18
||||||||||||||||||
Sbjct 75 CCGAGTCAGACTCGGGTGGGGGTCCCGGCGGCGGTAGCGGCGGCGGCGGTGCGAGCATGTCGTGGCTCTTCGGC 148
Query 19 ATTAACAAGGGCCCCAAGGGTGAAGACGCGGGGCCGCCGCCGCCTTTGCCGCCCGCGCAGCCCGGGGCCGAGGG 92
.||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 GTTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCGCCCGCGCAGCCCGGGGCCGAGGG 222
Query 93 CGGCGGGGACCGCGGCTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAGCAACTTCGACCCCACCGGCCTGG 166
|||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAGCAACTTCGACCCCACCGGCCTGG 296
Query 167 AGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTATGCCAAGGACGCCCTGAATCTGGCACAGATG 240
|||||||||||||||||||||||||||||||||||||||||||.||||||||.||||||||||||||.||||||
Sbjct 297 AGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTACGCCAAGGAGGCCCTGAATCTGGCGCAGATG 370
Query 241 CAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAA-------------------------------- 282
||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGCTGGAGTGCAATGGCGCAATCTCGGCTCACT 444
Query 283 -------------------------------------------------------------------------- 282
Sbjct 445 GCAACCTCCGCCTCCCGGGTTCAAGCGATTCATCTGCCTCAGCCTCTGGAGTAGCTGGGATTACAGGCACGCGC 518
Query 283 -------------------------------------------------------------------------- 282
Sbjct 519 CACCACGCCTGGCTAATGTTGTATTTTAGTAGAGACGGGGTTTCTCCATGTTGGTCAGGCTGGTCTCTAACTCC 592
Query 283 -------------------------------------------------------------------------- 282
Sbjct 593 CGACCTCAGGTGATCCACCCGCCTCGGCCTCTCAAACTGCTGGGATTACAGGCACGCGCCACCACGCCTGGCCT 666
Query 283 -------------------------------------------------------------------------- 282
Sbjct 667 ATTTTATTTTATTTTGAGACAGAGTGTCACTCTGTCCCCCAGTCTGGCGTGCAATGGTTTGATCTCGGCTCACT 740
Query 283 -------------------------------------------------------------------------- 282
Sbjct 741 GCAACCTCCACCTCCCGGGTTCAACCTCCTGCCTCAGCCTTCCGAGCAGCTGGGACTACAGGAGCCTGCCACCA 814
Query 283 -------------------------------------------------------------------------- 282
Sbjct 815 CATCTGGCGAATTTTTGTATTTTTAGTAGAGAAGGGGGTTCAGCATGTTGTCCAGGTTGGTCTTGAACTCCTGA 888
Query 283 -------------------------------------------------------------------------- 282
Sbjct 889 CCTCAGGTGATCCAGCCACTTTGGCCTCACAAAGTGCTGGGATTATAGGCAAGAGCGATGGCGCCCGGCCCACT 962
Query 283 -------------------------------------------------------------------------- 282
Sbjct 963 CAGCAGGATTCCTAGAATGGGCACGAGCTCTGCCCTCATCACAGTCCAAAAGTGAGCACCTGCCTGGAGCTGCC 1036
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1037 CAGAAACAGCCTTGTGGGGTGGGGTTGGTGTCTGACCTCCCTCCCCGGGGGCCTTCGCAGGCTTCTCTGCTGGT 1110
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1111 GCTTCTGTGCCTGTGGGTCTGGATTCCTCCAGGGCCTGATCCTGGGTGCAGATGCAGCTGGAAGCCCTGAACCT 1184
Query 283 -------------------------------------------------------------------------- 282
Sbjct 1185 GCTGCACACACTAGTCTGGGCACGGAGTCTCTGCCGTGCCGGAGCTGTGCAGACACAGGAGCGGCTGTCAGGCA 1258
Query 283 -----------------------------------------------GAGTATGAGGCCGCCGTGGAGCAGCTC 309
|||||||||||||||||||||||||||
Sbjct 1259 GTGCCAGCCCTGAGCAAGTGCCAGCTGGTGAGTGCTGTGCTCTGCAGGAGTATGAGGCCGCCGTGGAGCAGCTC 1332
Query 310 AAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGC 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 AAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGAGACCCGGCAGCACCAGGC 1406
Query 384 CAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATG 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 CAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGCAGCAGCAACTTCTCAATG 1480
Query 458 AGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAG 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 AGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGAGCCACCGTGGAGCGGGAG 1554
Query 532 ATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGGCCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGA 605
|||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 1555 ATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCGCGCCAAGGCCGAGCGGGA 1628
Query 606 GAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGGCCGAGCACCGTCAGACCGTCTTGGAGTCCATCA 679
||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||
Sbjct 1629 GAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGACCGTCTTGGAGTCCATCA 1702
Query 680 GGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACTGGGACAAAGTGACAGCCACGGTG 753
||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||
Sbjct 1703 GGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGACAAAGTGACAGCCACGGTG 1776
Query 754 GCTGGGCTGACGCTGCTGGCTGTTGGGGTCTACTCAGCCAAGAATGCCAC-GCTTGTCGCCGGCCGCTTCATCG 826
|||||||||||||||||||||||.|||||||||||||||||||||||.|| || .|||.|.|||||||||||||
Sbjct 1777 GCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGC-CGTCACTGGCCGCTTCATCG 1849
Query 827 AGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTTGAGGCGCTGCGGCACCCC 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||
Sbjct 1850 AGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTGGAGGCGCTGCGGCACCCC 1923
Query 901 ATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGCGCTGGAGGGTGTTGTGCTCAGTCCCAGCCTGGA 974
||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||.||||||||||||||
Sbjct 1924 ATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGTGCTTAGTCCCAGCCTGGA 1997
Query 975 AGCACGGGTGCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGAACCGCAGCCTGTACAGGAACATCCTGA 1048
||||||||||||||||||||||||||||||.||||||||||||||||||||..|||||||||||.||||||||.
Sbjct 1998 AGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCCTGTACAGGCACATCCTGC 2071
Query 1049 TGTACGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCC 1122
||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 TGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCACTCAGGCATGGACTACGCC 2145
Query 1123 ATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 ATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCACAAGCTCTTTGACTGGGC 2219
Query 1197 CAATACCAGCCGGCGCGGCCTCCTGCTCTTTGTGGATGAAGCGGACGCCTTCCTTCGGAAGCGAGCCACCGAGA 1270
||||||||||||||||||||||||||||||..||||||||||.||||||||||||||||||||||||||.|||.
Sbjct 2220 CAATACCAGCCGGCGCGGCCTCCTGCTCTTCATGGATGAAGCAGACGCCTTCCTTCGGAAGCGAGCCACTGAGG 2293
Query 1271 AGATAAGCGAGGACCTCAGGGCCACACTGAACGCCTTCCTGTACCGCACGGGCCAGCACAGCAACAA------- 1337
||||||||.||||||||||.|||||||||||||||||||||||||.||.||||||.|||||||||||
Sbjct 2294 AGATAAGCAAGGACCTCAGAGCCACACTGAACGCCTTCCTGTACCACATGGGCCAACACAGCAACAACCCCAGT 2367
Query 1338 -------------------------------------------------------------------------- 1337
Sbjct 2368 CACGTGTCACACGGAGGATCAAGTCCTGCTGGTCGGCCGTGGCTGACTCTTCAGGCACGTTGGGCTCCTGGGTC 2441
Query 1338 -------------------------------------------------------------------------- 1337
Sbjct 2442 AGCTGCTGCCGTTCGACGCTCCCTGGAGCCCTGACTCAGGTCCTTCCCAGAGAGGCAAGGCTGGGGCCCTGCTG 2515
Query 1338 -------------------------------------------------------------------------- 1337
Sbjct 2516 AGCCTCTGCTGAACCCGGGCCCCCGAGGTCCTGCTTCTGGCTCGCATGGCCATAATCTTGACAGGGACTCTGGG 2589
Query 1338 -------------------------------------------------------------------------- 1337
Sbjct 2590 TCCCGCATCCCTGCTCCCAGCACAGCGGGGCTCAGGTAGCAGGAGGGAGTGGTGTTCCCGGCACTGCCTATCAG 2663
Query 1338 -------------------------------------------------------------------------- 1337
Sbjct 2664 GCTGGGCGAGGGTCAGCGGGGAAGTACCACACAGGGCAAGAACAGAGGCCCGAGAAGCCGGGCGGGGGGCAGCT 2737
Query 1338 -------------------------------------------------------------------------- 1337
Sbjct 2738 GGGCGTGGTGGGGCAGGCAGGCGGGTGACCAGGGCTGTGGCTGCGTTCTCCCCATGTTTCCTGTGCTCACAAGC 2811
Query 1338 -------------------------------------------------------------------------- 1337
Sbjct 2812 TGCCGCTTTAGATTCTCCCAAAAAGTCTCCCCGAGGGGGCTGAGGAGCCCCCGTTGCCCTCGGGGCATCTCAGC 2885
Query 1338 ----------------------------------------GTTCATGCTGGTCCTGGCCAGCAACCAACCAGAG 1371
.|||||||||||||||||||||||.|..||.|||
Sbjct 2886 TGGCAGCCCCAGCGTTTCCTTCCCCATCCCTGTCCTACAGATTCATGCTGGTCCTGGCCAGCAATCTGCCTGAG 2959
Query 1372 CAGTTCGACTGGGCCATCAATGACCGCATCAATGAGATGGTCCACTTCGACCTGCCAGGGCAGGAGGAACGGGA 1445
|||||||||||.||||||||...||||||..|.|.|||||||||||||||||||||...|||||||||.|||||
Sbjct 2960 CAGTTCGACTGTGCCATCAACAGCCGCATTGACGTGATGGTCCACTTCGACCTGCCGCAGCAGGAGGAGCGGGA 3033
Query 1446 GCGCCTGGTGAGAATGTATTTTGACAAGTATGTTCTTAAGCCGGCCACAGAAGGAAAGCAGCGCCTGAAGCTGG 1519
|||||||||||||.||.||||||||||.|.|||||||||||||||||||||||||||.|.||||||||||||||
Sbjct 3034 GCGCCTGGTGAGACTGCATTTTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGGCGCCTGAAGCTGG 3107
Query 1520 CCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCT 1593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3108 CCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGGCCGGGAGATCGCT 3181
Query 1594 CAGCTGGCCGTGTCCTGGCAGGCCACGGCGTATGCCTCCGAGGACGGGGTCCTGACCGAGGCCATGATGGACAC 1667
|||||||||||||||||||||||||||||.|||||||||.|||||||||||||.||.|||||||||||||||.|
Sbjct 3182 CAGCTGGCCGTGTCCTGGCAGGCCACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGGCCATGATGGACGC 3255
Query 1668 CCGCGTGCAAGATGCTGTCCAGCAGCACCAGCAGAAGATGTGCTGGCTGAAGGCGGAAGGGCCTGGGCGTGGGG 1741
|.|.|||||||||||||||||||||.|||..|||||||||.||||||||||||||||.|||||||||||.||||
Sbjct 3256 CTGTGTGCAAGATGCTGTCCAGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGGCCTGGGCGCGGGG 3329
Query 1742 ACGAGCCCTCCCCATCC--------------------------------------------------------- 1758
.|||||.|.|||.||||
Sbjct 3330 TCGAGCACCCCCTATCCGGAGTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGACCCCTCCTACCCC 3403
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3404 TGCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAGGGCCTCTGTCCCC 3477
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3478 CAGGATGTCTTGTGGTGGCGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTGTAGGCACTGGCTAGGGAGG 3551
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3552 GGCAGGCCTCCTTCCTGCCCCTCGAGACACTCTTGGGAGATGCATTTTCCGTCTGGCTCACAGGGGGAGGGTGA 3625
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3626 GGCTTTGTACCCCAGCCCCTGCCCAGGCCACTGTGAGGGTGGGTGCTGGCTGAGCCCCTGGGGCAGAAGGAGTG 3699
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3700 GGGCAGGCGGGGTCTTTGTTCTCGGCTCCCACAGCAGAGCCAGGTGAGGGGGGGCCTGCCAGGACTAGACAGAA 3773
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3774 GTGGGGCGGCCTGAACCCTGCTTCCAGCCATGGCCAGGGGCCACGGAACCCGGCAGGGGTGTCTGAGGCCGCCC 3847
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3848 TGTCAGCTGGCCGGTCCAAGCCTGTGGCTGGAGCTGGTGTGTGTTTATCTAATAAAGTCCCACAGGTGCCTCAC 3921
