Construct: ORF ccsbBroad304_15089

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016453.1_s304c1, BRDN0000401287
Derived from:
ccsbBroadEn_15089
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ATAD3A (55210)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15089
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55210 ATAD3A ATPase family AAA domain co... NM_001170535.3 99.8% 99.8% 44G>A;108G>C
2 human 83858 ATAD3B ATPase family AAA domain co... XM_005244806.3 95.9% 93.5% (many diffs)
3 human 55210 ATAD3A ATPase family AAA domain co... XM_024448098.1 95.6% 95.4% 44G>A;108G>C;1338_1415del
4 human 55210 ATAD3A ATPase family AAA domain co... NM_018188.5 92.3% 92.2% 44G>A;108G>C;283_426del
5 human 83858 ATAD3B ATPase family AAA domain co... NM_031921.6 86.5% 84.5% (many diffs)
6 human 55210 ATAD3A ATPase family AAA domain co... NM_001170536.2 86.5% 86.5% 0_1ins237
7 human 83858 ATAD3B ATPase family AAA domain co... XM_011542244.1 80.6% 78.7% (many diffs)
8 human 83858 ATAD3B ATPase family AAA domain co... XM_011542241.3 78.7% 73.7% (many diffs)
9 human 83858 ATAD3B ATPase family AAA domain co... NM_001317238.2 76.6% 69.2% (many diffs)
10 human 55210 ATAD3A ATPase family AAA domain co... XR_001737282.1 68.1% (many diffs)
11 human 83858 ATAD3B ATPase family AAA domain co... XR_946776.2 66% (many diffs)
12 human 55210 ATAD3A ATPase family AAA domain co... XR_002956997.1 66% (many diffs)
13 human 83858 ATAD3B ATPase family AAA domain co... XR_001737470.1 65.8% (many diffs)
14 human 219293 ATAD3C ATPase family AAA domain co... NM_001039211.3 65.7% 62% (many diffs)
15 human 83858 ATAD3B ATPase family AAA domain co... XR_241045.2 64.6% (many diffs)
16 human 83858 ATAD3B ATPase family AAA domain co... XR_001737468.1 55.1% (many diffs)
17 human 83858 ATAD3B ATPase family AAA domain co... XR_002957738.1 49% (many diffs)
18 human 83858 ATAD3B ATPase family AAA domain co... XR_001737469.1 42.9% (many diffs)
19 mouse 108888 Atad3a ATPase family, AAA domain c... NM_179203.3 82.2% 91% (many diffs)
20 mouse 108888 Atad3a ATPase family, AAA domain c... XM_006538467.3 75.7% 79.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1824
ORF length:
1758
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtc gtggctcttc ggcattaaca agggccccaa gggtgaagac gcggggccgc
121cgccgccttt gccgcccgcg cagcccgggg ccgagggcgg cggggaccgc ggcttgggag
181accggccggc gcccaaggac aaatggagca acttcgaccc caccggcctg gagcgcgccg
241ccaaggcggc gcgcgagctg gagcactcgc gttatgccaa ggacgccctg aatctggcac
301agatgcagga gcagacgctg cagttggagc aacagtccaa gctcaaagag tatgaggccg
361ccgtggagca gctcaagagc gagcagatcc gggcgcaggc tgaggagagg aggaagaccc
421tgagcgagga gacccggcag caccaggcca gggcccagta tcaagacaag ctggcccggc
481agcgctacga ggaccaactg aagcagcagc aacttctcaa tgaggagaat ttacggaagc
541aggaggagtc cgtgcagaag caggaagcca tgcggcgagc caccgtggag cgggagatgg
601agctgcggca caagaatgag atgctgcgag tggaggccga ggcccgggcg cgcgccaagg
661ccgagcggga gaatgcagac atcatccgcg agcagatccg cctgaaggcg gccgagcacc
721gtcagaccgt cttggagtcc atcaggacgg ctggcacctt gtttggggaa ggattccgtg
781cctttgtgac agactgggac aaagtgacag ccacggtggc tgggctgacg ctgctggctg
841ttggggtcta ctcagccaag aatgccacgc ttgtcgccgg ccgcttcatc gaggctcggc
901tggggaagcc gtccctagtg agggagacgt cccgcatcac ggtgcttgag gcgctgcggc
961accccatcca ggtcagccgg cggctcctca gtcgacccca ggacgcgctg gagggtgttg
1021tgctcagtcc cagcctggaa gcacgggtgc gcgacatcgc catagcaaca aggaacacca
1081agaagaaccg cagcctgtac aggaacatcc tgatgtacgg gccaccaggc accgggaaga
1141cgctgtttgc caagaaactc gccctgcact caggcatgga ctacgccatc atgacaggcg
1201gggacgtggc ccccatgggg cgggaaggcg tgaccgccat gcacaagctc tttgactggg
1261ccaataccag ccggcgcggc ctcctgctct ttgtggatga agcggacgcc ttccttcgga
1321agcgagccac cgagaagata agcgaggacc tcagggccac actgaacgcc ttcctgtacc
1381gcacgggcca gcacagcaac aagttcatgc tggtcctggc cagcaaccaa ccagagcagt
1441tcgactgggc catcaatgac cgcatcaatg agatggtcca cttcgacctg ccagggcagg
1501aggaacggga gcgcctggtg agaatgtatt ttgacaagta tgttcttaag ccggccacag
1561aaggaaagca gcgcctgaag ctggcccagt ttgactacgg gaggaagtgc tcggaggtcg
1621ctcggctgac ggagggcatg tcgggccggg agatcgctca gctggccgtg tcctggcagg
1681ccacggcgta tgcctccgag gacggggtcc tgaccgaggc catgatggac acccgcgtgc
1741aagatgctgt ccagcagcac cagcagaaga tgtgctggct gaaggcggaa gggcctgggc
1801gtggggacga gccctcccca tcctgcccaa ctttcttgta caaagtggtt ggtaagccta
1861tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc
1921gcgttaagtc gacaatcaac ctctggatta

Download FASTA (ORF) (Full)