Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15089
- Subject:
- XR_002957738.1
- Aligned Length:
- 3417
- Identities:
- 1676
- Gaps:
- 1660
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACGCATTTCCGTCGCCGGGAGGAAGGGGTGTGTGTTTCGCCTGCGCAGTGGTCCTGGCCACCGGCTCGCGGCGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGAGGCTGCTCCCAGCCGCGCCCGAGTCAGACTCGGGTGGGGGTCCCGGCGGCGGTAGCGGCGGCGGCGGTG 148
Query 1 -----ATGTCGTGGCTCTTCGGCATTAACAAGGGCCCCAAGGGTGAAGACGCGGGGCCGCCGCCGCCTTTGCCG 69
||||||||||||||||||.||||||||||||||||||||||||.|||||||||||||||||||||||||
Sbjct 149 CGAGCATGTCGTGGCTCTTCGGCGTTAACAAGGGCCCCAAGGGTGAAGGCGCGGGGCCGCCGCCGCCTTTGCCG 222
Query 70 CCCGCGCAGCCCGGGGCCGAGGGCGGCGGGGACCGCGGCTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAG 143
||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct 223 CCCGCGCAGCCCGGGGCCGAGGGCGGCGGGGACCGCGGTTTGGGAGACCGGCCGGCGCCCAAGGACAAATGGAG 296
Query 144 CAACTTCGACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTATGCCAAGG 217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 297 CAACTTCGACCCCACCGGCCTGGAGCGCGCCGCCAAGGCGGCGCGCGAGCTGGAGCACTCGCGTTACGCCAAGG 370
Query 218 ACGCCCTGAATCTGGCACAGATGCAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGAGTATGAG 291
|.||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AGGCCCTGAATCTGGCGCAGATGCAGGAGCAGACGCTGCAGTTGGAGCAACAGTCCAAGCTCAAAGAGTATGAG 444
Query 292 GCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGA 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 GCCGCCGTGGAGCAGCTCAAGAGCGAGCAGATCCGGGCGCAGGCTGAGGAGAGGAGGAAGACCCTGAGCGAGGA 518
Query 366 GACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGC 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GACCCGGCAGCACCAGGCCAGGGCCCAGTATCAAGACAAGCTGGCCCGGCAGCGCTACGAGGACCAACTGAAGC 592
Query 440 AGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGA 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGCAGCAACTTCTCAATGAGGAGAATTTACGGAAGCAGGAGGAGTCCGTGCAGAAGCAGGAAGCCATGCGGCGA 666
Query 514 GCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGGCCGAGGCCCGGGCGCG 587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 667 GCCACCGTGGAGCGGGAGATGGAGCTGCGGCACAAGAATGAGATGCTGCGAGTGGAGACCGAGGCCCGGGCGCG 740
Query 588 CGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGGCCGAGCACCGTCAGA 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 741 CGCCAAGGCCGAGCGGGAGAATGCAGACATCATCCGCGAGCAGATCCGCCTGAAGGCGTCCGAGCACCGTCAGA 814
Query 662 CCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACTGGGAC 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 815 CCGTCTTGGAGTCCATCAGGACGGCTGGCACCTTGTTTGGGGAAGGATTCCGTGCCTTTGTGACAGACCGGGAC 888
Query 736 AAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTTGGGGTCTACTCAGCCAAGAATGCCAC-GCTTG 808
|||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|| || .|
Sbjct 889 AAAGTGACAGCCACGGTGGCTGGGCTGACGCTGCTGGCTGTCGGGGTCTACTCAGCCAAGAATGCGACAGC-CG 961
Query 809 TCGCCGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTT 882
||.|.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct 962 TCACTGGCCGCTTCATCGAGGCTCGGCTGGGGAAGCCGTCCCTAGTGAGGGAGACGTCCCGCATCACGGTGCTG 1035
Query 883 GAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGCGCTGGAGGGTGTTGT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||
Sbjct 1036 GAGGCGCTGCGGCACCCCATCCAGGTCAGCCGGCGGCTCCTCAGTCGACCCCAGGACGTGCTGGAGGGTGTTGT 1109
Query 957 GCTCAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACAAGGAACACCAAGAAGAACCGCAGCC 1030
|||.||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||..|||
Sbjct 1110 GCTTAGTCCCAGCCTGGAAGCACGGGTGCGCGACATCGCCATAGCAACCAGGAACACCAAGAAGAACCGGGGCC 1183
Query 1031 TGTACAGGAACATCCTGATGTACGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCAC 1104
||||||||.||||||||.||||.|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 TGTACAGGCACATCCTGCTGTATGGGCCACCAGGCACCGGGAAGACGCTGTTTGCCAAGAAACTCGCCCTGCAC 1257
Query 1105 TCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCA 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 TCAGGCATGGACTACGCCATCATGACAGGCGGGGACGTGGCCCCCATGGGGCGGGAAGGCGTGACCGCCATGCA 1331
Query 1179 CAAGCTCTTTGACTGGGCCAATACCAGCCGGCGC---------------------------------------- 1212
||||||||||||||||||||||||||||||||||
Sbjct 1332 CAAGCTCTTTGACTGGGCCAATACCAGCCGGCGCGGGAGGAGATAAGCAAGGACCTCAGAGCCACACTGAACGC 1405
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1406 CTTCCTGTACCACATGGGCCAACACAGCAACAAGTGAGGGAGCCCCTCGGGTCCTGAGCCCCCGGGCAGGGCTG 1479
Query 1213 -------------------------------------------------------------------------- 1212
Sbjct 1480 TGCAGCCGTCGCCCTTGGTTCCCACTGAGGGTCCCTGGCTCACAGTGCTGGGCACCAGCTGTGGCCTCAGTGTG 1553
Query 1213 ----------------------------------------------------------------------GGCC 1216
||||
Sbjct 1554 CCCACCTCAGATGTCCCCTGGGAACGGCCCAGCTCGGGACAGCACGGGGTGTCATTGAGGAACATGCAGGGGCC 1627
Query 1217 TCC----------------------------------------------------------------------- 1219
|||
Sbjct 1628 TCCCGGGCAGAGCTGGGGTCAGTCCTGTCTTCACGGCCCTGTGCGCCGCCGCCCCAGCTTGCAGGTCCCTCTGC 1701
Query 1220 ---------------------------------------------TGCT------------------------- 1223
||||
Sbjct 1702 CCCTAGATTTCTGCGGTCCTGTGCCTGCAAGGGAGGTGGTCTGATTGCTGCCGCCCAGAGGTCCCCAGTAGGGT 1775
Query 1224 --------CTTTGT------------------------------------------------------------ 1229
||.|||
Sbjct 1776 GACCGGCCCTATGTCCAGGCTCCCTCTTCCCTCCCAAATCCCTTAATTTTGAGTTTTCTTGGTCTCCTGGGCCC 1849
Query 1230 ----------------------------GGATGAAG----------CGGACG---------------------- 1243
||||.||| |||.||
Sbjct 1850 CTCCAGCCCCAGTCACGTGTCACACGGAGGATCAAGTCCTGCTGGTCGGCCGTGGCTGACTCTTCAGGCACGTT 1923
Query 1244 -----CCT---------------------------------------------TCCTTC--------GGAAG-- 1257
||| |||||| |.|||
Sbjct 1924 GGGCTCCTGGGTCAGCTGCTGCCGTTCGACGCTCCCTGGAGCCCTGACTCAGGTCCTTCCCAGAGAGGCAAGGC 1997
Query 1258 ----------------------------CGAGCCACCGAG------------------AAG---ATAAGC--GA 1280
||.|||.||||| |.| ||||.| ||
Sbjct 1998 TGGGGCCCTGCTGAGCCTCTGCTGAACCCGGGCCCCCGAGGTCCTGCTTCTGGCTCGCATGGCCATAATCTTGA 2071
Query 1281 ---GGAC------------------------------------CTCAGG------------------------- 1290
|||| ||||||
Sbjct 2072 CAGGGACTCTGGGTCCCGCATCCCTGCTCCCAGCACAGCGGGGCTCAGGTAGCAGGAGGGAGTGGTGTTCCCGG 2145
Query 1291 --------------------------------------GCCACAC------TGAAC----GCC----------- 1305
.|||||| .|||| |||
Sbjct 2146 CACTGCCTATCAGGCTGGGCGAGGGTCAGCGGGGAAGTACCACACAGGGCAAGAACAGAGGCCCGAGAAGCCGG 2219
Query 1306 ----------------------------------------------------------------------TTCC 1309
||||
Sbjct 2220 GCGGGGGGCAGCTGGGCGTGGTGGGGCAGGCAGGCGGGTGACCAGGGCTGTGGCTGCGTTCTCCCCATGTTTCC 2293
Query 1310 TGTAC----------------------------------------------------------------CGCAC 1319
|||.| |.|.|
Sbjct 2294 TGTGCTCACAAGCTGCCGCTTTAGATTCTCCCAAAAAGTCTCCCCGAGGGGGCTGAGGAGCCCCCGTTGCCCTC 2367
Query 1320 GGGCCAGCACAG-----------------------------------CAACAAGTTCATGCTGGTCCTGGCCAG 1358
|||.||.|.||| |.|||..||||||||||||||||||||
Sbjct 2368 GGGGCATCTCAGCTGGCAGCCCCAGCGTTTCCTTCCCCATCCCTGTCCTACAGATTCATGCTGGTCCTGGCCAG 2441
Query 1359 CAACCAACCAGAGCAGTTCGACTGGGCCATCAATGACCGCATCAATGAGATGGTCCACTTCGACCTGCCAGGGC 1432
|||.|..||.||||||||||||||.||||||||...||||||..|.|.|||||||||||||||||||||...||
Sbjct 2442 CAATCTGCCTGAGCAGTTCGACTGTGCCATCAACAGCCGCATTGACGTGATGGTCCACTTCGACCTGCCGCAGC 2515
Query 1433 AGGAGGAACGGGAGCGCCTGGTGAGAATGTATTTTGACAAGTATGTTCTTAAGCCGGCCACAGAAGGAAAGCAG 1506
|||||||.||||||||||||||||||.||.||||||||||.|.|||||||||||||||||||||||||||.|.|
Sbjct 2516 AGGAGGAGCGGGAGCGCCTGGTGAGACTGCATTTTGACAACTGTGTTCTTAAGCCGGCCACAGAAGGAAAACGG 2589
Query 1507 CGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGG 1580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2590 CGCCTGAAGCTGGCCCAGTTTGACTACGGGAGGAAGTGCTCGGAGGTCGCTCGGCTGACGGAGGGCATGTCGGG 2663
Query 1581 CCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGCGTATGCCTCCGAGGACGGGGTCCTGACCGAGG 1654
||||||||||||||||||||||||||||||||||||||||||.|||||||||.|||||||||||||.||.||||
Sbjct 2664 CCGGGAGATCGCTCAGCTGGCCGTGTCCTGGCAGGCCACGGCATATGCCTCCAAGGACGGGGTCCTCACTGAGG 2737
Query 1655 CCATGATGGACACCCGCGTGCAAGATGCTGTCCAGCAGCACCAGCAGAAGATGTGCTGGCTGAAGGCGGAAGGG 1728
|||||||||||.||.|.|||||||||||||||||||||.|||..|||||||||.||||||||||||||||.|||
Sbjct 2738 CCATGATGGACGCCTGTGTGCAAGATGCTGTCCAGCAGTACCGACAGAAGATGCGCTGGCTGAAGGCGGAGGGG 2811
Query 1729 CCTGGGCGTGGGGACGAGCCCTCCCCATCC-------------------------------------------- 1758
||||||||.||||.|||||.|.|||.||||
Sbjct 2812 CCTGGGCGCGGGGTCGAGCACCCCCTATCCGGAGTCCAAGGCGAGACCCTCACCTCATGGAGCCTGGCCACGGA 2885
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2886 CCCCTCCTACCCCTGCCTTGCCGGCCCCTGCACATTTAGGATATGCTCCTGGATGGGGACTGGGCTGTGCCCAG 2959
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 2960 GGCCTCTGTCCCCCAGGATGTCTTGTGGTGGCGGTCGGCCGTTCTGCCCCCCAGGGCACCCCCTGTTGTAGGCA 3033
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3034 CTGGCTAGGGAGGGGCAGGCCTCCTTCCTGCCCCTCGAGACACTCTTGGGAGATGCATTTTCCGTCTGGCTCAC 3107
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3108 AGGGGGAGGGTGAGGCTTTGTACCCCAGCCCCTGCCCAGGCCACTGTGAGGGTGGGTGCTGGCTGAGCCCCTGG 3181
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3182 GGCAGAAGGAGTGGGGCAGGCGGGGTCTTTGTTCTCGGCTCCCACAGCAGAGCCAGGTGAGGGGGGGCCTGCCA 3255
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3256 GGACTAGACAGAAGTGGGGCGGCCTGAACCCTGCTTCCAGCCATGGCCAGGGGCCACGGAACCCGGCAGGGGTG 3329
Query 1759 -------------------------------------------------------------------------- 1758
Sbjct 3330 TCTGAGGCCGCCCTGTCAGCTGGCCGGTCCAAGCCTGTGGCTGGAGCTGGTGTGTGTTTATCTAATAAAGTCCC 3403
Query 1759 ------------- 1758
Sbjct 3404 ACAGGTGCCTCAC 3416