Nucleotide Global Alignment

Description

• Query: ccsbBroad304_15247
• Subject: NM_001365700.2
• Aligned Length: 3490
• Identities: 2265
• Gaps: 1115

Alignment

Query    1  ATGGCGACCTCCGAGAGGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAAC  74
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct    1  ATGGCGACCTCCGAGAGGGCTCTCCTGAGGACCAGAGCTGCCTCTCTCCTGAGAGGCTTGGGCAGATCCCGAAC  74

Query   75  TGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAGA  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct   75  TGGAGCCCGATCGTTACAGTTTCGCGCAGAAAAAGAGCGTCAGCCTTGCTGGTCTTTTCCCATGGGGCAGAAGA  148

Query  149  CGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTCG  222
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  CGAAAGGCAGCTCTAACATAGCCTCCTCCTACCTGCTCCAGCAGCTCATGCACCGCTATCAGGAGCTGGACTCG  222

Query  223  GACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGGA  296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GACGGAGATGAGGACCAGGGCGAGGGCGAGGCGGGATCCGAGGAGTCCTCAGAGTCCGAAATGCTGAATTTGGA  296

Query  297  GGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCTG  370
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  GGAGGAATTTGATGGGGTCCTGAGAGAGGAGGCTGTGGCCAAAGCACTCCATCACTTGGGGCGCTCAGGCTCTG  370

Query  371  GGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATAT  444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GGACTGAGCAAGTCTACCTCAATCTAACTTTATCAGGTTGTAATTTAATTGATGTTAGCATTCTCTGTGGATAT  444

Query  445  GTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATCT  518
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GTTCATCTACAGAAGTTGGATCTTTCAGCGAATAAAATTGAAGATTTATCTTGTGTGAGTTGTATGCCTTATCT  518

Query  519  CCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAAG  592
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct  519  CCTAGAACTTAATGCTTCTCAAAATAATTTGACTACGTTCTTCAATTTCAAGCCACCCAAAAACCTCAAGAAGG  592

Query  593  CGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTTG  666
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CGGATTTTTCCCACAACCAAATTTCTGAAATTTGTGATTTGTCAGCGTATCATGCTCTCACTAAACTAATTTTG  666

Query  667  GATGGCAATGAGATAGAAG-AATCAGTGGACTAGAGATGTGCA--CACCTAATTCACCTTAGTTTGGCC-ACAA  736
            ||||||||||||||||||| |||||||||||||||||||||||  .||||||||||||||||||||||| ||||
Sbjct  667  GATGGCAATGAGATAGAAGAAATCAGTGGACTAGAGATGTGCAACAACCTAATTCACCTTAGTTTGGCCAACAA  740

Query  737  T-AGATCACGAC-ATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTGTTCTGAGCAATAACCAGATTGAG  808
            | |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  741  TAAGATCACGACAATTAATGGCTTAAACAAGTTACCAATCAAAATACTTTG-TCTGAGCAATAACCAGATTGAG  813

Query  809  ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA  882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  814  ATGATCACAGGTTTGGAGGATCTGAAAGCCCTGCAGAACCTGGATCTGTCCCACAATCAGATAAGCAGCCTCCA  887

Query  883  AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG  956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  888  AGGCTTAGAGAATCATGACCTCCTGGAAGTGATCAACCTGGAGGATAATAAGATTGCTGAGCTGAGAGAAATAG  961

Query  957  AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT  1030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  962  AATACATTAAAAATTTACCCATCCTTCGAGTTCTCAATCTTCTAGAAAATCCAATTCAGGAAAAGTCTGAATAT  1035

Query 1031  TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT  1104
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036  TGGTTCTTCGTAATTTTTATGCTTCTGCGATTAACAGAATTAGATCAGAAGAAGATTAAAGTGGAAGAAAAGGT  1109

Query 1105  TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA  1178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110  TTCAGCAGTGAATAAATATGATCCTCCCCCTGAAGTGGTTGCAGCTCAAGACCACCTGACCCATGTTGTCAACA  1183

Query 1179  GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCTCCTTATCCCATGCTGATACTA  1252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184  GCGTGATGCAGCCGCAGAGGATCTTTGACAGCACTCTTCCCAGCCTGGATGCTCCTTATCCCATGCTGATACTA  1257

Query 1253  GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA  1326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258  GCTGGTCCTGAAGCTTGTGGGAAACGAGAGCTTGCCCATCGCCTCTGCAGACAGTTTAGCACTTACTTCAGATA  1331

Query 1327  TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG  1400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1332  TGGGGCCTGTCATACCACAAGACCACCTTACTTTGGAGAAGGGGATCGAGTTGATTATCATTTTATCTCTCAAG  1405

Query 1401  ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA  1474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406  ACGTTTTTGATGAAATGGTGAACATGGGGAAATTCATTCTAACATTTAGTTATGGTAATCACAAGTATGGATTA  1479

Query 1475  AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG  1548
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480  AATAGGGACACCGTAGAAGGTATCGCAAGAGATGGTTTGGCAAGCTGTATTCATATGGAAATAGAAGGTGTAAG  1553

Query 1549  AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT  1622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554  AAGTTTGAAATATTCCTATTTTGAGCCTCGTTATATCCTGGTGGTGCCCATGAACAAGGAAAAATATGAGGGAT  1627

Query 1623  ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTATAATAAA  1696
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||.||
Sbjct 1628  ATTTGCGGAGAAAAGGATTATTCAGTCGTGCAGAAATTGAATTTGCTGTCTCCAGAGTGGACCTTTAT-ATTAA  1700

Query 1697  AATTAATCAGAATTTTCCGGGGATATTTGAATGAGGTAATCAATGCAGATGATCTGGATG-TGCCTTACAAAAA  1769
            |||||||||||||||||| |||||||||..|||||||||||||||||||||||||||||| |||| |||.||||
Sbjct 1701  AATTAATCAGAATTTTCC-GGGATATTTTGATGAGGTAATCAATGCAGATGATCTGGATGTTGCC-TACCAAAA  1772

Query 1770  ACTGAGTCAGCTCATTAGAGAATACCTTGGATGGAATGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGATG  1843
            ||||||||||||||||||||||||||||||||.||.|||||||||||||||||||||||||||||||||||..|
Sbjct 1773  ACTGAGTCAGCTCATTAGAGAATACCTTGGATTGACTGAGGAACCTGCCAAGAGTTTGGCTACAACTGCAGCAG  1846

Query 1844  TA------------AAGA------------------CATCCCACCT------------------------GAAA  1863
            .|            ||||                  ||.|.|||||                        ||||
Sbjct 1847  GAGCTCCCGCTAGCAAGAAGACTGTCTCTGGGGTGCCAGCACACCTGGTTCCATCTCCCAGGTGCTTGGCGAAA  1920

Query 1864  CCTG-AAGC------------------GCATC---CTACAAAGTATATT----------TCTTCGAATAT----  1901
             ||| ||||                  |||||   ||..||.|.|.|||          .|.|.|||.||    
Sbjct 1921  -CTGCAAGCAGATGGCCAGATGACAGAGCATCTCTCTGGAATGCAAATTCATGCCAAGGACCTAGAAAATCAGA  1993

Query 1902  GGGTGATTTCCT-----------------------------------------------GCATTCTACAGACAG  1928
            |.|| |..||||                                               ||.||||.|.|||||
Sbjct 1994  GCGT-AACTCCTGCCCAGAACCAAGAGCTGGCTCAGGATGGAGAAACCCATCAAAAAGAGCTTTCTCCTGACAG  2066

Query 1929  ----------------------AAACTACCTCATTAAAT----TTTGGGCCAAACTT--TCAG-----CCAAAA  1969
                                  .||| ||||||.|..||    ..||||    .|||  ||||     |||..|
Sbjct 2067  CCATCTCAATCCTGAGCTCCCTCAAC-ACCTCAGTTCATCAGCACTGGG----TCTTCCTCAGCAGGCCCAGGA  2135

Query 1970  ---------AAACACCAGCGGAA-----------------AGAGATT---CTATACACAGACAG-CAC-GAGGC  2012
                     |||| |||.|||||                 |||..||   ||| |.|||.|.|| ||| |||.|
Sbjct 2136  CCTATCCCTAAAC-CCAACGGAAGAGGATGTCCAACAATCAGATCTTCCCCTA-AAACAAATAGCCACTGAGAC  2207

Query 2013  AG----CCCGGCAAGCTCTAA-----------TGGGAAGGATACGCCCTGATCACAC-----------ACTCCT  2060
            ||    |||.|  ||.|..||           ||||.||   .|.|||  |||||.|           .|||||
Sbjct 2208  AGATGTCCCTG--AGGTGGAAGCCAGTGAGGTTGGGCAG---TCTCCC--ATCACCCCGACCCTGGTGCCTCCT  2274

Query 2061  AT------TTC------------------------------------AAAGGGGTC----CAGTACCAG-----  2083
            .|      |||                                    .||||.|||    .||..||||     
Sbjct 2275  GTGCACCCTTCCCCTCCCTCGTCCCGCAGCCCTCAGCCAGGCCAGGACAAGGAGTCAGGGGAGGCCCAGGTAAC  2348

Query 2084  -----------CACCTCTCACCAGTGGTCTACACTATTATACA-------------ACT-----------TTAG  2122
                       |.|||||        ||||..||  .|.||||             |||           |.||
Sbjct 2349  CCCTACTGGCCCTCCTCT--------GTCTGAAC--CTCTACAGGGACCTGGCCCCACTCCCCTCAGCCCTCAG  2412

Query 2123  AAGAACTCTGGA-----AAAGTTTTGA-TCTTTGTGAAGACTATTTTAAACCTCCA--------TTTGGACCAT  2182
             ||||.||.|||     |||   |||| ||       ||||      ||||.||||        ||...|||||
Sbjct 2413  -AGAATTCAGGATGAGGAAA---TTGAGTC-------AGAC------AAACTTCCACCCAGCAGTTCCCACCAT  2469

Query 2183  -ATCCT-GAAAAGAGTGGGAAGGATTC------------CTTGGTTTCCATGAAA--TGTT--CATTGTTTC--  2236
             ||||| .||||          |||||            |||||  |.|| ||||  ||.|  |   |.|||  
Sbjct 2470  GATCCTCCAAAA----------GATTCTTCCCACACTGACTTGG--TGCA-GAAACTTGCTGGC---GATTCTC  2527

Query 2237  ----GGTTCTG----------------------------TCCGTGGTCA-----------AAAGAATTGC----  2263
                .|.||||                            |||| .||||           ..||||.|||    
Sbjct 2528  AGCAAGCTCTGAAGGAGGAAACCTCCAAACCGGAAGCCATCCG-AGTCAGTATCCCTCACCCAGAACTGCCACA  2600

Query 2264  ---------CTT--------------TCCAGCCTCCGG--AGGGGAG---------CATTTCTTCACACCTAGG  2303
                     |||              ..|||||.|.||  |||||||         |.||.|||    |||||.
Sbjct 2601  TCCCCAAGACTTAGCAACAGATACCAAGCAGCCCCAGGCCAGGGGAGCCCCGGGGACCTTGCTT----CCTAGA  2670

Query 2304  A-------------------------------TCAGGAG-----------CCAGTGACAGTGAGACCGAAGAGA  2335
            |                               |||||.|           ||||.| ||| |||.||   .|.|
Sbjct 2671  AGCCGGCTGGCTCCCACTCGGCTGCCCCAGCCTCAGGTGCTGGCTCCCCTCCAGAG-CAG-GAGGCC---CACA  2739

Query 2336  CCCGGAAAGCACTACCTAT--------------------------ACAATCATTTTCACATGAAA--AAGA--G  2379
            |||  ||   ||| |||||                          ||||.|    ||.|||.|||  |.||  |
Sbjct 2740  CCC--AA---ACT-CCTATCGCCCAGCAGGGAAGAGGCTTTAGGAACAACC----TCCCATCAAACCATGACGG  2803

Query 2380  TCT------------CACCAAC-------ACAGACA-----ACACTCGGTCCCAGTCATCAGTCGCCCAGGTTC  2429
            |||            |||||||       .||||||     |.|||...||||| |||      ||||    ||
Sbjct 2804  TCTCTCCCAGGCTTCCACCAACCCGGGAAGCAGACACCAGTAAACTTCCTCCCA-TCA------GCCC----TC  2866

Query 2430  C-AACGTCAAACCCACCCTCCC---TCCAATCCCTCAGG--GCC-----------GCAGG--------------  2472
            | .|| |||||.|||||  .||   ||..|.|||.||||  |||           |||.|              
Sbjct 2867  CGCAC-TCAAAACCACC--ACCAAATCTGAGCCCCCAGGCAGCCCACAGTCTTCAGCAAGTCCAGGAAGAGAAG  2937

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 2938  GTCAGTGAGGTGAAACTCCCTCTTATCAGTCCCCCCAGCCAGGAGCAAGCAGAACCTCGCATCCTCAGTCCCGC  3011

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3012  CCAGGAGGAGGCGGCTCAGAAAGTGAGGCTCCCTCGCATTCCTGCTCCTCTTCCGGAGCCAGGGCTGCCCCAGA  3085

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3086  ACTCGGGGACTCAGCCTGATCCAAGGCCTGCAAAGGAAAGGAAAGCTCCCCAAGCAGGCAGCTCCTCCAGGAGG  3159

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3160  AAGATTCCAGACATGCGGGCCTCACCCCACAACCAGGGGCCACTTCAGCAGACAGGGGCTAGGGAAAAAAAGCT  3233

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3234  CCCCAACCAGAAAGGGACGGCTAGAGGACTGGCACCTCTGGAAGAGGCACCACCTGGGAACCACCAGCCAGCCT  3307

Query 2473  --------------------------------------------------------------------------  2472
                                                                                      
Sbjct 3308  TGCAGCTAGAACCCCACGATCAGCCAGCTCCCACCATGGTGCCCGACGATCCCAACCCCAGCCCTCCTCTTGTT  3381

Query 2473  ------------  2472
                        
Sbjct 3382  TCTTGTCTAAGC  3393