Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15300
- Subject:
- XM_017006223.1
- Aligned Length:
- 3425
- Identities:
- 1111
- Gaps:
- 2269
Alignment
Query 1 ATGCAATTCCCCTCGCCTCCAGCCGCGAGGAGCTCCCCGGCGCCGCAGGCAGCGTCCTCCTCCGAAGCAGCTGC 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 ACCTGCAACTGGGCAGCCTGGACCCTCGTGCCCTGTTCCCGGGACCTCGCGCAGGGGGCGCCCCGGGACACCCC 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 CTGCGGGCCGGGTGGAGGAGGAAGAGGAGGAGGAGGAAGAAGACGTGGACAAGGACCCCCATCCTACCCAGAAC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 ACCTGCCTGCGCTGCCGCCACTTCTCTTTAAGGGAGAGGAAAAGAGAGCCTAGGAGAACCATGGGGGGCTGCGA 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 AGTCCGGGAATTTCTTTTGCAATTTGGTTTCTTCTTGCCTCTGCTGACAGCGTGGCCAGGCGACTGCAGTCACG 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 TCTCCAACAACCAAGTTGTGTTGCTTGATACAACAACTGTACTGGGAGAGCTAGGATGGAAAACATATCCATTA 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 AATGGGTGGGATGCCATCACTGAAATGGATGAACATAATAGGCCCATTCACACATACCAGGTATGTAATGTAAT 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 GGAACCAAACCAAAACAACTGGCTTCGTACAAACTGGATCTCCCGTGATGCAGCTCAGAAAATTTATGTGGAAA 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 TGAAATTCACACTAAGGGATTGTAACAGCATCCCATGGGTCTTGGGGACTTGCAAAGAAACATTTAATCTGTTT 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 TATATGGAATCAGATGAGTCCCACGGAATTAAATTCAAGCCAAACCAGTATACAAAGATCGACACAATTGCTGC 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 TGATGAGAGTTTTACCCAGATGGATTTGGGTGATCGCATCCTCAAACTCAACACTGAAATTCGTGAGGTGGGGC 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 CTATAGAAAGGAAAGGATTTTATCTGGCTTTTCAAGACATTGGGGCGTGCATTGCCCTGGTTTCAGTCCGTGTT 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 TTCTACAAGAAATGCCCCTTCACTGTTCGTAACTTGGCCATGTTTCCTGATACCATTCCAAGGGTTGATTCCTC 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 CTCTTTGGTTGAAGTACGGGGTTCTTGTGTGAAGAGTGCTGAAGAGCGTGACACTCCTAAACTGTATTGTGGAG 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 CTGATGGAGATTGGCTGGTTCCTCTTGGAAGGTGCATCTGCAGTACAGGATATGAAGAAATTGAGGGTTCTTGC 1110
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1111 CATGCTTGCAGACCAGGATTCTATAAAGCTTTTGCTGGGAACACAAAATGTTCTAAATGTCCTCCACACAGTTT 1184
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1185 AACATACATGGAAGCAACTTCTGTCTGTCAGTGTGAAAAGGGTTATTTCCGAGCTGAAAAAGACCCACCTTCTA 1258
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1259 TGGCATGTACCAGGCCACCTTCAGCTCCTAGGAATGTGGTTTTTAACATCAATGAAACAGCCCTTATTTTGGAA 1332
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1333 TGGAGCCCACCAAGTGACACAGGAGGGAGAAAAGATCTCACATACAGTGTAATCTGTAAGAAATGTGGCTTAGA 1406
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1407 CACCAGCCAGTGTGAGGACTGTGGTGGAGGACTCCGCTTCATCCCAAGACATACAGGCCTGATCAACAATTCCG 1480
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1481 TGATAGTACTTGACTTTGTGTCTCACGTGAATTACACCTTTGAAATAGAAGCAATGAATGGAGTTTCTGAGTTG 1554
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1555 AGTTTTTCTCCCAAGCCATTCACAGCTATTACAGTGACCACGGATCAAGATGCACCTTCCCTGATAGGTGTGGT 1628
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1629 AAGGAAGGACTGGGCATCCCAAAATAGCATTGCCCTATCATGGCAAGCACCTGCTTTTTCCAATGGAGCCATTC 1702
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1703 TGGACTACGAGATCAAGTACTATGAGAAAGAACATGAGCAGCTGACCTACTCTTCCA---CAAGGTCCAAAGCC 1773
|| ||||| |||| |||| ||||...||||
Sbjct 1 ---------------------AT--GAAAG------------------ACTC-TCCATTTCAAGTGACAAA--- 29
Query 1774 CCCAGTGTCATCATCACAGGTCTTAAGCCAGCCACCAAATATGTATTTCACATCCGAGTGAGAACTGCGACAGG 1847
|.||| ||.|| ||||| |||.||.||.|||
Sbjct 30 ---ACTGT-------ACTGG-CTTAA--------------------------------TGAAAAGTGGGAC--- 57
Query 1848 ATACAGTGGCTACAGTCAGAAATTTGAATTTGAAACAGGAGATGAAACTTCTGACATGGCAGCAGAACAAGGAC 1921
|..|.||.|| ||| |||||||||||||||||||||||||||
Sbjct 58 -TTTATTGCCT-CAG--------------------------------CTTCTGACATGGCAGCAGAACAAGGAC 97
Query 1922 AGATTCTCGTGATAGCCACCGCCGCTGTTGGCGGATTCACTCTCCTCGTCATCCTCACTTTATTCTTCTTGATC 1995
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 98 AGATTCTCGTGATAGCCACCGCCGCTGTTGGCGGATTCACTCTCCTCGTCATCCTCACTTTATTCTTCTTGATC 171
Query 1996 ACTGGGAGATGTCAGTGGTACATAAAAGCCAAGATGAAGTCAGAAGAGAAGAGAAGAAACCACTTACAGAATGG 2069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 ACTGGGAGATGTCAGTGGTACATAAAAGCCAAGATGAAGTCAGAAGAGAAGAGAAGAAACCACTTACAGAATGG 245
Query 2070 GCATTTGCGCTTCCCGGGAATTAAAACTTACATTGATCCAGATACATATGAAGACCCATCCCTAGCAGTCCATG 2143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 GCATTTGCGCTTCCCGGGAATTAAAACTTACATTGATCCAGATACATATGAAGACCCATCCCTAGCAGTCCATG 319
Query 2144 AATTTGCAAAGGAGATTGATCCCTCAAGAATTCGTATTGAGAGAGTCATTGGGGCAGGTGAATTTGGAGAAGTC 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 AATTTGCAAAGGAGATTGATCCCTCAAGAATTCGTATTGAGAGAGTCATTGGGGCAGGTGAATTTGGAGAAGTC 393
Query 2218 TGTAGTGGGCGTTTGAAGACACCAGGGAAAAGAGAGATCCCAGTTGCCATTAAAACTTTGAAAGGTGGCCACAT 2291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 TGTAGTGGGCGTTTGAAGACACCAGGGAAAAGAGAGATCCCAGTTGCCATTAAAACTTTGAAAGGTGGCCACAT 467
Query 2292 GGATCGGCAAAGAAGAGATTTTCTAAGAGAAGCTAGTATCATGGGCCAGTTTGACCATCCAAACATCATTCGCC 2365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 GGATCGGCAAAGAAGAGATTTTCTAAGAGAAGCTAGTATCATGGGCCAGTTTGACCATCCAAACATCATTCGCC 541
Query 2366 TAGAAGGGGTTGTCACCAAAAGATCCTTCCCGGCCATTGGGGTGGAGGCGTTTTGCCCCAGCTTCCTGAGGGCA 2439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 542 TAGAAGGGGTTGTCACCAAAAGATCCTTCCCGGCCATTGGGGTGGAGGCGTTTTGCCCCAGCTTCCTGAGGGCA 615
Query 2440 GGGTTTTTAAATAGCATCCAGGCCCCGCATCCAGTGCCAGGGGGAGGATCTTTGCCCCCCAGGATTCCTGCTGG 2513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 GGGTTTTTAAATAGCATCCAGGCCCCGCATCCAGTGCCAGGGGGAGGATCTTTGCCCCCCAGGATTCCTGCTGG 689
Query 2514 CAGACCAGTAATGATTGTGGTGGAATATATGGAGAATGGATCCCTAGACTCCTTTTTGCGGAAGCATGATGGCC 2587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 690 CAGACCAGTAATGATTGTGGTGGAATATATGGAGAATGGATCCCTAGACTCCTTTTTGCGGAAGCATGATGGCC 763
Query 2588 ACTTCACAGTCATCCAGTTGGTCGGAATGCTCCGAGGCATTGCATCAGGCATGAAGTATCTTTCTGATATGGGT 2661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 ACTTCACAGTCATCCAGTTGGTCGGAATGCTCCGAGGCATTGCATCAGGCATGAAGTATCTTTCTGATATGGGT 837
Query 2662 TATGTTCATCGAGACCTAGCGGCTCGGAATATACTGGTCAATAGCAACTTAGTATGCAAAGTTTCTGATTTTGG 2735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 TATGTTCATCGAGACCTAGCGGCTCGGAATATACTGGTCAATAGCAACTTAGTATGCAAAGTTTCTGATTTTGG 911
Query 2736 TCTCTCCAGAGTGCTGGAAGATGATCCAGAAGCTGCTTATACAACAACTGGTGGAA-----AAATCCCCATAAG 2804
|||||||||||||||||||||||||||||||||||||||||||||||||.| | |||||.|.|.||.
Sbjct 912 TCTCTCCAGAGTGCTGGAAGATGATCCAGAAGCTGCTTATACAACAACTAG----ACCCACAAATCACAACAAA 981
Query 2805 GTGGACAGCCCCAGAAGCCATC------GCCTACAGAAAAT--TCTCCTCAGCAAGC------GATGCA----- 2859
| |||.||| |..||.||||.|| ||| .|.|||| || |||
Sbjct 982 G--------------AGCAATCAGAACTGGTTAAAGAAGATGGTCT----GGAAAGCTTGTGTGA-GCAGTGCG 1036
Query 2860 --TGGAGCTATGG-CATTGTCATGTGGGA--GGTCATGTCCTATGGAGAGAGACCTTATTGGGAAATGTCTAAC 2928
|..||||.||| .||.||..| ||| |||| .||.|.|||| ||||| |||
Sbjct 1037 AGTCCAGCTCTGGTTATGGTACT---GGACTGGTC--CTCATGTGGA-AGAGA------------------AAC 1086
Query 2929 CAAGATGTCATTCTGTCCATTGAAGAAGGGTACAGACTTCCAGCTCCCATGGGCTGTCCAGCATCTCTACACCA 3002
||||||| ||||||| || |||
Sbjct 1087 -----------------------AGAAGGG----------------CCATGGG------AG----------CCA 1105
Query 3003 GCTGATGCTCCACTGCTGGCAGAAGGAGAGAAATCACAGACCA-AAATTTACTGACATTGTCAGCTTCCTTGAC 3075
| |||| ||||||| ||| .||.|| ||||
Sbjct 1106 G---------------TGGC----------------CAGACCAGAAA-------GCAATG----------TGAC 1131
Query 3076 AA-ACTGATCCGAAATCCCAGTGCCCTTC-ACACCCTGGTGGAGGACATCCTTGTAATGCCAGAGTCCCCTGGT 3147
|| |..||| || ||||.| ||| || ||| ||.|| |||||.|||
Sbjct 1132 AAGAGAGAT---AA---------CCCTCCAACA-----GT-GAG----TCTTT-------CAGAGCCCC----- 1171
Query 3148 GAAGTTCCGGAATATCCTTTGTTTGTCACAGTTGGTGACTGGCTAGATTCTATAAAGATGGGGCAATACAAGAA 3221
||| ..||.|||||.| ||| ||
Sbjct 1172 ---GTT--TAAAAATCCTAT-------ACA--TG---------------------------------------- 1191
Query 3222 TAACTTCGTGGCAGCAGGGTTTACAACATTTGACCTGATTTCAAGAATGAGCATTGATGACATTAGAAGAATTG 3295
Sbjct 1192 -------------------------------------------------------------------------- 1191
Query 3296 GAGTCATACTTATTGGACACCAGAGACGAATAGTCAGCAGCATACAGACTTTACGTTTACACATGATGCACATA 3369
Sbjct 1192 -------------------------------------------------------------------------- 1191
Query 3370 CAGGAGAAGGGATTTCATGTA 3390
Sbjct 1192 --------------------- 1191
