Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15307
- Subject:
- XR_001749542.1
- Aligned Length:
- 2286
- Identities:
- 1114
- Gaps:
- 1167
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GCAGGGTGGGGGAAAGGGATGGAGTTTCGGCCTGGGGCGGCGGGGGCGGCCCAGAAAAGGCCTAGCGTCCTGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTGTGTGGGTGTAGCGTCCAGGGCGCGTCGGTCTCTATGGCAACGCTCCACACGCGGAGGTCGGGTACGGTTAT 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CTGTGGCCACAAAGAAAGTTATTTGTCTCTGTCTTGGCAAGGCTGGGAGGAAAGTTTTAGCTAAGAAACTCAGC 222
Query 1 ------------ATGGATAAGTACGATGTGATTAAGGCCATCGGGCAAGGTGCCTTCGGGAAAGCATACTTAGC 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCATTGGAGACCATGGATAAGTACGATGTGATTAAGGCCATCGGGCAAGGTGCCTTCGGGAAAGCATACTTAGC 296
Query 63 TAAAGGGAAATCAGATAGCAAGCACTGTGTCATAAAAGAGATCAATTTTGAAAAGATGCCCATACAAGAAAAAG 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TAAAGGGAAATCAGATAGCAAGCACTGTGTCATAAAAGAGATCAATTTTGAAAAGATGCCCATACAAGAAAAAG 370
Query 137 AAGCTTCAAAGAAAGAAGTGATTCTTCTGGAAAAGATGAAACATCCCAACATTGTAGCCTTCTTCAATTCATTT 210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 AAGCTTCAAAGAAAGAAGTGATTCTTCTGGAAAAGATGAAACATCCCAACATTGTAGCCTTCTTCAATTCATTT 444
Query 211 CAAGAGAATGGCAGGCTGTTTATTGTAATGGAATATTGTGATGGAGGGGATCTCATGAAAAGGATCAATAGACA 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CAAGAGAATGGCAGGCTGTTTATTGTAATGGAATATTGTGATGGAGGGGATCTCATGAAAAGGATCAATAGACA 518
Query 285 ACGGGGTGTGTTATTTAGTGAAGATCAGATCCTCGGTTGGTTTGTACAGATTTCTCTAGGACTAAAACATATTC 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 ACGGGGTGTGTTATTTAGTGAAGATCAGATCCTCGGTTGGTTTGTACAGATTTCTCTAGGACTAAAACATATTC 592
Query 359 ATGACAGGAAGATATTACACAGGGACATAAAAGCTCAGAACATTTTTCTTAGCAAGAACGGAATGGTGGCAAAG 432
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGACAGGAAGATATTACACAGGGACATAAAAGCTCAGAACATTTTTCTTAGCAAGAACGGAATGGTGGCAAAG 666
Query 433 CTTGGGGACTTTGGTATAGCAAGAGTCCTGAATAATTCCATGGAACTTGCTCGAACTTGTATTGGAACACCTTA 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 CTTGGGGACTTTGGTATAGCAAGAGTCCTGAATAATTCCATGGAACTTGCTCGAACTTGTATTGGAACACCTTA 740
Query 507 CTACCTGTCCCCAGAGATCTGTCAGAATAAACCCTACAACAATAAAACGGATATTTGGTCTCTTGGCTGTGTCT 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CTACCTGTCCCCAGAGATCTGTCAGAATAAACCCTACAACAATAAAACGGATATTTGGTCTCTTGGCTGTGTCT 814
Query 581 TATATGAGCTCTGCACACTTAAACATCCTTTTGAGGGTAACAACTTACAGCAGCTGGTTCTGAAGATTTGTCAA 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TATATGAGCTCTGCACACTTAAACATCCTTTTGAGGGTAACAACTTACAGCAGCTGGTTCTGAAGATTTGTCAA 888
Query 655 GCACATTTTGCCCCAATATCTCCGGGGTTTTCTCGTGAGCTCCATTCCTTGATATCTCAGCTCTTTCAAGTATC 728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GCACATTTTGCCCCAATATCTCCGGGGTTTTCTCGTGAGCTCCATTCCTTGATATCTCAGCTCTTTCAAGTATC 962
Query 729 T-CTCGAGACCGA-CAT-CATAAATTCCATTTTGAAA--GCCC-TTTTAGAGAATCTTATTCCC-AATATTTGA 795
| ||||||||||| ||| ||||||||||||||||||| |||| |||||||||||||||||||| |||||||||
Sbjct 963 TCCTCGAGACCGACCATCCATAAATTCCATTTTGAAAAGGCCCTTTTTAGAGAATCTTATTCCCAAATATTTGA 1036
Query 796 CTCCTGGAGGTCATTCAGGAGGAATTCAGTCACATGCTTATATGCAGAGCAGGAGCGCCAGCTTCTCGACATGC 869
||||| ||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CTCCT-GAGGTCATTCAGGAAGAATTCAGTCACATGCTTATATGCAGAGCAGGAGCGCCAGCTTCTCGACATGC 1109
Query 870 TGGGAAGGTGGTCCAGAAGTGTAAAATACAAAAAGTGAGATTCCAGGGAAAGTGCCCACCAAGATCAAGGATAT 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 TGGGAAGGTGGTCCAGAAGTGTAAAATACAAAAAGTGAGATTCCAGGGAAAGTGCCCACCAAGATCAAGGATAT 1183
Query 944 CTGTGCCAATTAAAAGGAATGCTATATTGCATAGAAATGAATGGAGACCACCAGCTGGAGCCCAGAAGGCCAGA 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 CTGTGCCAATTAAAAGGAATGCTATATTGCATAGAAATGAATGGAGACCACCAGCTGGAGCCCAGAAGGCCAGA 1257
Query 1018 TCTATAAAAATGATAGAAAGACCCAAAATTGCTGCTGTCTGTGGACATTATGATTATTATTATGCTCAACTTGA 1091
|||
Sbjct 1258 TCT----------------------------------------------------------------------- 1260
Query 1092 TATGCTGAGGAGGAGAGCCCACAAACCAAGTTATCACCCTATTCCTCAAGAAAATACTGGAGTTGAGGATTACG 1165
Sbjct 1261 -------------------------------------------------------------------------- 1260
Query 1166 GTCAGGAAACGAGGCATGGTCCATCCCCAAGTCAATGGCCTGCTGAGTACCTTCAGAGAAAATTTGAAGGTCCA 1239
||||||||||||||||||||||||||||||||.||.|
Sbjct 1261 -------------------------------------GCCTGCTGAGTACCTTCAGAGAAAATTTGAAGCTCAA 1297
Query 1240 CAATATAAGTTTGAAAGTGGAGAAGCAATTGGGTCTTCGTCCATCTCTTGCCGAGCCAAATTACAACCAAGAGA 1313
||||||||| ||||||||||||||||||||||||||||||||||||..||||||||||||||||
Sbjct 1298 CAATATAAG-TTGAAAGTGGAGAAGCAATTGGGTCTTCGTCCATCTTCTGCCGAGCCAAATTAC---------- 1360
Query 1314 CAAGAGCTAGNAAGTAATGGAGAAGAGCCTAGATTCCAGGAGCTGCCATTTAGGAAAAACGAAATGAAGGAACA 1387
Sbjct 1361 -------------------------------------------------------------------------- 1360
Query 1388 GGAATATTGGAAGCAGTTAGAGGAAATACGCCAACAGTACCACAATGACATGAAAGAAATTAGAAAGAAGATGG 1461
Sbjct 1361 -------------------------------------------------------------------------- 1360
Query 1462 GGAGAGAACCAGAGGAGAACTCAAAAATAAGTCATAAAACCTATTTGGTGAAGAAGAGTAACCTGCCTGTCCAT 1535
Sbjct 1361 -------------------------------------------------------------------------- 1360
Query 1536 CAAGATGCATCTGAGGGAGAAGCACCTGTGCAGGACATTGAAAAAGACTTGAAACAAATGAGGCTTCAGAACAC 1609
Sbjct 1361 -------------------------------------------------------------------------- 1360
Query 1610 AAAGGAAAGTAAAAATCCAGAACAGAAATATAAAGCTAAGAAGGGGGTAAAATTTGAAATTAATTTAGACAAAT 1683
Sbjct 1361 -------------------------------------------------------------------------- 1360
Query 1684 GTATTTCTGATGAAAACATCCTCCAAGAGGAAGAGGCAATGGATATACCAAATGAAACTTTGACCTTTGAGGAT 1757
Sbjct 1361 -------------------------------------------------------------------------- 1360
Query 1758 GGCATGAAGTTTAAGGAATATGAATGTGTAAAGGAGCATGGAGATTATACAGACAAAGCATTTGAAAAACTTCA 1831
Sbjct 1361 -------------------------------------------------------------------------- 1360
Query 1832 CTGCCCAGAAGCAGGGTTTTCCACGCAGACTGTAGCTGCTGTGGGAAACAGGAGGCAGTGGGATGGAGGAGCGC 1905
Sbjct 1361 -------------------------------------------------------------------------- 1360
Query 1906 CTCAGACTCTGCTGCAGATGATGGCAGTGGCCGACATCACCTCCACCTGCCCCACGGGGCCTGACAGTGAGTCT 1979
Sbjct 1361 -------------------------------------------------------------------------- 1360
Query 1980 GTGCTTAGCGTCAGTCGTCAGGAAGGGAAGACCAAGGACCCGTACAGCCCAGTGCTCATCCTGATG 2045
Sbjct 1361 ------------------------------------------------------------------ 1360
