Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15360
- Subject:
- XR_002957148.1
- Aligned Length:
- 2594
- Identities:
- 1373
- Gaps:
- 1217
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ACAGAATTAGGCCAATTTATTTAATTCCATTTGTTCATGTATCCAGCCAACAGATATTTATGGTGCACTTGTTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGTGCCAGCCCCGCCCCCACCACTCCACCCTACCCCAGCAGGCGCTAAAGGAGAGCTGACATGATGGATAACGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAAGAAGACGCTGTCCTTCTATTCAGGGAGTTTAACATCTGGAAGAGCCGGGAGTTCTTTGTGCTAAAGGCCC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TCTACAAAGTGCCTGAGATGCAAAAATAAGTCACTTTCTCTGTCCTCTCAGCAACCGAGTCGCATGTCGTTATC 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 AAATTTTTATTTTCTGTAACTGTTTCCTTCCGTCTTGCTCCGTAGACAGCTTTTTGCAGCAGAGAGCGCTGCCG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 CGGGGCTGGTGTCTACTCTTCAGTAAGTGGTCAAAACCTGGCTACTGGAAGGAAATGCAATGGAATCGCTCCGC 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCTCGAGTATTCTCTTTGGAACTACGGGAATGACAGCTCCAGTGGGACACTTGGAGGTCATGATGAACGCAAAG 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 AACGTGGTGCTGGCTAGAGTGTATACGTTTGGACCCAAGCTTAACTTTTCCAATGTGGAATCCTGGGCCTTCAT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TGATCATCCAATGGCAGACCAGAGAATGGACATTTCTTCAACCATCAGTGATTTCATGTCCCCGGGCCCCACCG 666
Query 1 ------------------------------------------------------------------ATGATTAA 8
.|||.||.
Sbjct 667 ACCTGCTTTCCAGCTCTCTTGGTACCAGTGGTGTGGATTGCAACCGCAAACGGAAAGGCAGCTCCACTGACTAC 740
Query 9 TATAGAAAGCATGGACACAGACAAAGATGACCCTCATGGAAGGTTAGAATATACAGAACACCAAGGAAGGATAA 82
.| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 CA-AGAAAGCATGGACACAGACAAAGATGACCCTCATGGAAGGTTAGAATATACAGAACACCAAGGAAGGATAA 813
Query 83 AAAATGCAAGGGAAGCTCACAGTCAGATTGAAAAGCGGCGTCGGGATAAAATGAACAGTTTTATAGATGAATTG 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 AAAATGCAAGGGAAGCTCACAGTCAGATTGAAAAGCGGCGTCGGGATAAAATGAACAGTTTTATAGATGAATTG 887
Query 157 GCTTCTTTGGTACCAACATGCAACGCAATGTCCAGGAAATTAGATAAACTTACTGTGCTAAGGATGGCTGTTCA 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 GCTTCTTTGGTACCAACATGCAACGCAATGTCCAGGAAATTAGATAAACTTACTGTGCTAAGGATGGCTGTTCA 961
Query 231 GCACATGAAAACATTAAGAGGTGCCACCAATCCATACACAGAAGCAAACTACAAACCAACTTTTCTATCAGACG 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 GCACATGAAAACATTAAGAGGTGCCACCAATCCATACACAGAAGCAAACTACAAACCAACTTTTCTATCAGACG 1035
Query 305 ATGAATTGAAACACCTCATTCTCAGGGCAGCAGATGGATTTTTGTTTGTCGTAGGATGTGACCGAGGGAAGATA 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 ATGAATTGAAACACCTCATTCTCAGGGCAGCAGATGGATTTTTGTTTGTCGTAGGATGTGACCGAGGGAAGATA 1109
Query 379 CTCTTTGTCTCAGAGTCTGTCTTCAAGATCCTCAACTACAGCCAGAATGATCTGATTGGTCAGAGTTTGTTTGA 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CTCTTTGTCTCAGAGTCTGTCTTCAAGATCCTCAACTACAGCCAGAATGATCTGATTGGTCAGAGTTTGTTTGA 1183
Query 453 CTACCTGCATCCTAAAGATATTGCCAAAGTCAAGGAGCAGCTCTCCTCCTCTGACACCGCACCCCGGGAGCGGC 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1184 CTACCTGCATCCTAAAGATATTGCCAAAGTCAAGGAGCAGCTCTCCTCCTCTGACACCGCACCCCGGGAGCGGC 1257
Query 527 TCATAGATGCA--------------------------------------------------------------- 537
|||||||||||
Sbjct 1258 TCATAGATGCAAAAAAATCTAGAAAATCCCAGTTGTATGCTCCTGAGTTTAAAGGGCTAAGTTTGATTTGTTCT 1331
Query 538 --------------------------------------------------AAAACTGGACTTCCAGTTAAAACA 561
||||||||||||||||||||||||
Sbjct 1332 CCCAGAACAAATGGGCTCTATTTACCTGAATTGCACACAGGCAGCCTCATAAAACTGGACTTCCAGTTAAAACA 1405
Query 562 GATATAACCCCTGGGCCATCTCGATTATGTTCTGGAGCACGACGTTCTTTCTTCTGTAGGATGAAGTGTAACAG 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1406 GATATAACCCCTGGGCCATCTCGATTATGTTCTGGAGCACGACGTTCTTTCTTCTGTAGGATGAAGTGTAACAG 1479
Query 636 GCCTTCAGTAAAGGTTGAAGACAAGGACTTCCCCTCTACCTGCTCAAAGAAAAAAGCAGATCGAAAAAGCTTCT 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 GCCTTCAGTAAAGGTTGAAGACAAGGACTTCCCCTCTACCTGCTCAAAGAAAAAAGCAGATCGAAAAAGCTTCT 1553
Query 710 GCACAATCCACAGCACAGGCTATTTGAAAAGCTGGCCACCCACAAAGATGGGGCTGGATGAAGACAACGAACCA 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 GCACAATCCACAGCACAGGCTATTTGAAAAGCTGGCCACCCACAAAGATGGGGCTGGATGAAGACAACGAACCA 1627
Query 784 GACAATGAGGGGTGTAACCTCAGCTGCCTCGTCGCAATTGGACGACTGCATTCTCATGTAGTTCCACAACCAGT 857
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1628 GACAATGAGGGGTGTAACCTCAGCTGCCTCGTCGCAATTGGACGACTGCATTCTCATGTAGTTCCACAACCAGT 1701
Query 858 GAACGGGGAAATCAGGGTGAAATCTATGGAATATGTTTCTCGGCACGCGATAGATGGAAAGTTTGTTTTTGTAG 931
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1702 GAACGGGGAAATCAGGGTGAAATCTATGGAATATGTTTCTCGGCACGCGATAGATGGAAAGTTTGTTTTTGTAG 1775
Query 932 ACCAGAGGGCAACAGCTATTTTGGCATATTTACCACAAGAACTTCTAGGCACATCGTGTTATGAATATTTTCAC 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1776 ACCAGAGGGCAACAGCTATTTTGGCATATTTACCACAAGAACTTCTAGGCACATCGTGTTATGAATATTTTCAC 1849
Query 1006 CAAGATGACATAGGACATCTTGCAGAATGTCATAGGCAAGTTTTACAGACGAGAGAAAAAATTACAACTAATTG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 CAAGATGACATAGGACATCTTGCAGAATGTCATAGGCAAGTTTTACAGACGAGAGAAAAAATTACAACTAATTG 1923
Query 1080 CTATAAATTTAAAATCAAAGATGGTTCTTTTATCACACTACGGAGTCGATGGTTCAGTTTCATGAACCCTTGGA 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1924 CTATAAATTTAAAATCAAAGATGGTTCTTTTATCACACTACGGAGTCGATGGTTCAGTTTCATGAACCCTTGGA 1997
Query 1154 CCAAGGAAGTAGAATATATTGTCTCAACTAACACTGTTGTTTTAGCCAACGTCCTGGAAGGCGGGGACCCAACC 1227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1998 CCAAGGAAGTAGAATATATTGTCTCAACTAACACTGTTGTTTTAGCCAACGTCCTGGAAGGCGGGGACCCAACC 2071
Query 1228 TTCCCACAGCTCACAGCATCCCCCCACAGCATGGACAGCATGCTGCCCTCTGGAGAAGGTGGCCCAAAGAGGAC 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2072 TTCCCACAGCTCACAGCATCCCCCCACAGCATGGACAGCATGCTGCCCTCTGGAGAAGGTGGCCCAAAGAGGAC 2145
Query 1302 CCACCCCACTGTTCCAGGGATTCCAGGGGGAACCCGGGCTGGGGCAGGAAAAATAGGCCGAATGATTGCTGAGG 1375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 CCACCCCACTGTTCCAGGGATTCCAGGGGGAACCCGGGCTGGGGCAGGAAAAATAGGCCGAATGATTGCTGAGG 2219
Query 1376 AAATCATGGAAATCCACAGGATAAGAGGGTCATCGCCTTCTAGCTGTGGCTCCAGCCCATTGAACATCACGAGT 1449
|||
Sbjct 2220 AAA----------------------------------------------------------------------- 2222
Query 1450 ACGCCTCCCCCTGATGCCTCTTCTCCAGGAGGCAAGAAGATTTTAAATGGAGGGACTCCAGACATTCCTTCCAG 1523
Sbjct 2223 -------------------------------------------------------------------------- 2222
Query 1524 TGGCCTACTATCAGGCCAGGCTCAGGAGAACCCAGGTTATCCATATTCTGATAGTTCTTCTATTCTTGGTGAGA 1597
Sbjct 2223 -------------------------------------------------------------------------- 2222
Query 1598 ACCCCCACATAGGTATAGACATGATTGACAACGACCAAGGATCAAGTAGTCCCAGTAATGATGAGGCAGCAATG 1671
Sbjct 2223 -------------------------------------------------------------------------- 2222
Query 1672 GCTGTCATCATGAGCCTCTTGGAAGCAGATGCTGGACTGGGTGGCCCTGTTGACTTTAGTGACTTGCCATGGCC 1745
Sbjct 2223 -------------------------------------------------------------------------- 2222
Query 1746 GCTG 1749
Sbjct 2223 ---- 2222
