Construct: ORF ccsbBroad304_15360

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002113.1_s304c1, BRDN0000408813
Derived from:
ccsbBroadEn_15360
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARNTL (406)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15360
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 406 ARNTL aryl hydrocarbon receptor n... NM_001297724.1 100% 100%
2 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351808.1 100% 100%
3 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351816.1 100% 100%
4 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351820.1 100% 100%
5 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351821.1 100% 100%
6 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351822.1 100% 100%
7 human 406 ARNTL aryl hydrocarbon receptor n... NM_001030273.2 99.8% 99.8% 689_690insAGC
8 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351818.1 99.8% 99.8% 689_690insAGC
9 human 406 ARNTL aryl hydrocarbon receptor n... XM_017017748.1 99.8% 99.8% 689_690insAGC
10 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351823.1 99.1% 99.1% 1284_1298del
11 human 406 ARNTL aryl hydrocarbon receptor n... XM_006718234.1 99.1% 99.1% 1284_1298del
12 human 406 ARNTL aryl hydrocarbon receptor n... XM_011520111.1 99.1% 99.1% 1284_1298del
13 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351813.1 98.9% 98.9% 689_690insAGC;1281_1295del
14 human 406 ARNTL aryl hydrocarbon receptor n... XM_017017744.1 98.9% 98.9% 689_690insAGC;1281_1295del
15 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351809.1 95.7% 95.7% 1_78del
16 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351812.1 95.7% 95.7% 1_78del
17 human 406 ARNTL aryl hydrocarbon receptor n... XM_024448522.1 95.7% 95.7% 1_78del
18 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351805.1 93.6% 92.4% (many diffs)
19 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351806.1 93.5% 92.3% (many diffs)
20 human 406 ARNTL aryl hydrocarbon receptor n... NM_001297719.1 92.8% 92.4% (many diffs)
21 human 406 ARNTL aryl hydrocarbon receptor n... NM_001297722.1 92.8% 92.4% (many diffs)
22 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351824.1 92.8% 92.4% (many diffs)
23 human 406 ARNTL aryl hydrocarbon receptor n... NM_001030272.2 92.6% 92.3% (many diffs)
24 human 406 ARNTL aryl hydrocarbon receptor n... NM_001178.5 92.6% 92.3% (many diffs)
25 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351804.1 92.6% 92.3% (many diffs)
26 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351815.1 92.6% 92.3% (many diffs)
27 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351807.1 92% 91.7% (many diffs)
28 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351814.1 92% 91.7% (many diffs)
29 human 406 ARNTL aryl hydrocarbon receptor n... XM_011520109.1 92% 91.7% (many diffs)
30 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351819.1 91.9% 91.6% (many diffs)
31 human 406 ARNTL aryl hydrocarbon receptor n... XM_017017741.1 91.9% 91.6% (many diffs)
32 human 406 ARNTL aryl hydrocarbon receptor n... XM_017017739.2 86.8% 86.5% (many diffs)
33 human 406 ARNTL aryl hydrocarbon receptor n... XM_011520107.3 86.7% 86.3% (many diffs)
34 human 406 ARNTL aryl hydrocarbon receptor n... XM_017017738.2 86.2% 85.9% (many diffs)
35 human 406 ARNTL aryl hydrocarbon receptor n... XM_011520105.3 86% 85.7% (many diffs)
36 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351810.1 73.9% 73.6% (many diffs)
37 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351817.1 73.9% 73.6% (many diffs)
38 human 406 ARNTL aryl hydrocarbon receptor n... NM_001351811.1 64.4% 64.4% 0_1ins621
39 human 406 ARNTL aryl hydrocarbon receptor n... NR_147785.1 60.3% (many diffs)
40 human 406 ARNTL aryl hydrocarbon receptor n... NR_147786.1 60.2% (many diffs)
41 human 406 ARNTL aryl hydrocarbon receptor n... NR_147788.1 59% (many diffs)
42 human 406 ARNTL aryl hydrocarbon receptor n... NR_147790.1 59% 1_604del;1801_1895del;2449_2961del
43 human 406 ARNTL aryl hydrocarbon receptor n... NR_147791.1 58.9% (many diffs)
44 human 406 ARNTL aryl hydrocarbon receptor n... NR_147787.1 57.3% (many diffs)
45 human 406 ARNTL aryl hydrocarbon receptor n... XR_001747876.2 56.4% (many diffs)
46 human 406 ARNTL aryl hydrocarbon receptor n... NR_147789.1 56.1% (many diffs)
47 human 406 ARNTL aryl hydrocarbon receptor n... XR_002957147.1 56% (many diffs)
48 human 406 ARNTL aryl hydrocarbon receptor n... XR_002957148.1 52.9% (many diffs)
49 mouse 11865 Arntl aryl hydrocarbon receptor n... NM_007489.4 85% 91.2% (many diffs)
50 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_017321949.1 84.9% 91% (many diffs)
51 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_017321950.1 84.9% 91% (many diffs)
52 mouse 11865 Arntl aryl hydrocarbon receptor n... NM_001243048.1 84.5% 91.1% (many diffs)
53 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507252.2 84.4% 90.4% (many diffs)
54 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507250.2 84.3% 90.2% (many diffs)
55 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507253.2 84.2% 90.3% (many diffs)
56 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507251.2 84.1% 90% (many diffs)
57 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507245.2 83.6% 89.4% (many diffs)
58 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507246.3 83.6% 89.4% (many diffs)
59 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507247.3 83.6% 89.4% (many diffs)
60 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507248.2 83.6% 89.4% (many diffs)
61 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_011241656.2 83.6% 89.4% (many diffs)
62 mouse 11865 Arntl aryl hydrocarbon receptor n... XM_006507249.2 83.4% 89.3% (many diffs)
63 mouse 11865 Arntl aryl hydrocarbon receptor n... XR_001785467.1 52.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1818
ORF length:
1749
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gattaatata gaaagcatgg acacagacaa agatgaccct catggaaggt
121tagaatatac agaacaccaa ggaaggataa aaaatgcaag ggaagctcac agtcagattg
181aaaagcggcg tcgggataaa atgaacagtt ttatagatga attggcttct ttggtaccaa
241catgcaacgc aatgtccagg aaattagata aacttactgt gctaaggatg gctgttcagc
301acatgaaaac attaagaggt gccaccaatc catacacaga agcaaactac aaaccaactt
361ttctatcaga cgatgaattg aaacacctca ttctcagggc agcagatgga tttttgtttg
421tcgtaggatg tgaccgaggg aagatactct ttgtctcaga gtctgtcttc aagatcctca
481actacagcca gaatgatctg attggtcaga gtttgtttga ctacctgcat cctaaagata
541ttgccaaagt caaggagcag ctctcctcct ctgacaccgc accccgggag cggctcatag
601atgcaaaaac tggacttcca gttaaaacag atataacccc tgggccatct cgattatgtt
661ctggagcacg acgttctttc ttctgtagga tgaagtgtaa caggccttca gtaaaggttg
721aagacaagga cttcccctct acctgctcaa agaaaaaagc agatcgaaaa agcttctgca
781caatccacag cacaggctat ttgaaaagct ggccacccac aaagatgggg ctggatgaag
841acaacgaacc agacaatgag gggtgtaacc tcagctgcct cgtcgcaatt ggacgactgc
901attctcatgt agttccacaa ccagtgaacg gggaaatcag ggtgaaatct atggaatatg
961tttctcggca cgcgatagat ggaaagtttg tttttgtaga ccagagggca acagctattt
1021tggcatattt accacaagaa cttctaggca catcgtgtta tgaatatttt caccaagatg
1081acataggaca tcttgcagaa tgtcataggc aagttttaca gacgagagaa aaaattacaa
1141ctaattgcta taaatttaaa atcaaagatg gttcttttat cacactacgg agtcgatggt
1201tcagtttcat gaacccttgg accaaggaag tagaatatat tgtctcaact aacactgttg
1261ttttagccaa cgtcctggaa ggcggggacc caaccttccc acagctcaca gcatcccccc
1321acagcatgga cagcatgctg ccctctggag aaggtggccc aaagaggacc caccccactg
1381ttccagggat tccaggggga acccgggctg gggcaggaaa aataggccga atgattgctg
1441aggaaatcat ggaaatccac aggataagag ggtcatcgcc ttctagctgt ggctccagcc
1501cattgaacat cacgagtacg cctccccctg atgcctcttc tccaggaggc aagaagattt
1561taaatggagg gactccagac attccttcca gtggcctact atcaggccag gctcaggaga
1621acccaggtta tccatattct gatagttctt ctattcttgg tgagaacccc cacataggta
1681tagacatgat tgacaacgac caaggatcaa gtagtcccag taatgatgag gcagcaatgg
1741ctgtcatcat gagcctcttg gaagcagatg ctggactggg tggccctgtt gactttagtg
1801acttgccatg gccgctgtnn ccaactttct tgtacaaagt ggttggtaag cctatcccta
1861accctctcct cggtctcgat tctacgtagt aatgagctag cgctaaccgg tggcgcgtta
1921agtcgacaat caacctctgg atta

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