Nucleotide Global Alignment

Description

• Query: ccsbBroad304_15443
• Subject: NM_001098479.2
• Aligned Length: 1343
• Identities: 939
• Gaps: 265

Alignment

Query    1  ATGGCCGTCATGGCGCCCCGAACCCTCGTCCTGCTACTCTCGGGGGCTCTGGCCCTGACCCAGACCTGGGCGGG  74
                     |||||||||||||.||||.|||||||.|||||.|||||.||||||||||||.|.||.||||||||
Sbjct    1  ---------ATGGCGCCCCGAAGCCTCCTCCTGCTGCTCTCAGGGGCCCTGGCCCTGACCGATACTTGGGCGGG  65

Query   75  CTCTCACTCCATGAGGTATTTCTTCACATCCGTGTCCCGGCCCGGCCGCGGGGAGCCCCGCTTCATCGCAGTGG  148
            |||.||||||.|||||||||||..|||..|.|||||.|||||||||||||||||||||||||.||||||.||||
Sbjct   66  CTCCCACTCCTTGAGGTATTTCAGCACCGCTGTGTCGCGGCCCGGCCGCGGGGAGCCCCGCTACATCGCCGTGG  139

Query  149  GCTACGTGGACGACACGCAGTTCGTGCGGTTCGACAGCGACGCCGCGAGCCAGAGGATGGAGCCGCGGGCGCCG  222
            ..|||||.|||||||||||.|||.||||||||||||||||||||||||..|.|||||||||||||||||.||||
Sbjct  140  AGTACGTAGACGACACGCAATTCCTGCGGTTCGACAGCGACGCCGCGATTCCGAGGATGGAGCCGCGGGAGCCG  213

Query  223  TGGATAGAGCAGGAGGGTCCGGAGTATTGGGACGGGGA-GACACGGAAAGTGAAGGCCCACTCACAGACTCACC  295
            |||.|.|||||.|||||.|||.|||||||||| |.||| .|||.||.|.|..||||||.||.||||||||.|||
Sbjct  214  TGGGTGGAGCAAGAGGGGCCGCAGTATTGGGA-GTGGACCACAGGGTACGCCAAGGCCAACGCACAGACTGACC  286

Query  296  GAGTGGACCTGGGGACCCTGCGCGGCTACTACAACCAGAGCGAGGCCGGTTCTCACACCGTCCAGAGGATGTAT  369
            ||||||.||||.|||.|||||.|.||..||||||||||||||||||.||.|||||||||.|||||.|.|||.||
Sbjct  287  GAGTGGCCCTGAGGAACCTGCTCCGCCGCTACAACCAGAGCGAGGCTGGGTCTCACACCCTCCAGGGAATGAAT  360

Query  370  GGCTGCGACGTGGGGTCGGACTGGCGCTTCCTCCGCGGGTACCACCAGTACGCCTACGACGGCAAGGATTACAT  443
            |||||||||.|||||.|.|||.|.|||.|||||||||||||.||||||.||||.||||||||||||||||||||
Sbjct  361  GGCTGCGACATGGGGCCCGACGGACGCCTCCTCCGCGGGTATCACCAGCACGCGTACGACGGCAAGGATTACAT  434

Query  444  CGCCCTGAAAGAGGACCTGCGCCCTTGGACCGCGGCGGACATGGCAGCTCAGACCACCAAGCACAAGTGGGAGG  517
            |.|||||||.||||||||||||.|.||||||||||||||||..|..|||||||.||||.|||.|...|..||||
Sbjct  435  CTCCCTGAACGAGGACCTGCGCTCCTGGACCGCGGCGGACACCGTGGCTCAGATCACCCAGCGCTTCTATGAGG  508

Query  518  C---GGCCCATGTGGCGGAGCAGTTGAGAGCCTACCTGGAGGGCACGTGCGTGGAGTGGCTCCGCAGATACCTG  588
            |   ||...||   ||.|||.||||.||..||||||||||||||..||||.||||||.|||||||||||||.||
Sbjct  509  CAGAGGAATAT---GCAGAGGAGTTCAGGACCTACCTGGAGGGCGAGTGCCTGGAGTTGCTCCGCAGATACTTG  579

Query  589  GAGAACGGGAAGGAGACGCTGCAGCGCACGGACGCCCCCAAAACGCATA---TGACTCACCACGCTGTCTCTGA  659
            |||||.||||||||||||||.||||||.|.||  .||.|.|||.|||.|   || |.||||||.|..|||||||
Sbjct  580  GAGAATGGGAAGGAGACGCTACAGCGCGCAGA--TCCTCCAAAGGCACACGTTG-CCCACCACCCCATCTCTGA  650

Query  660  CCATGAAGCCACCCTGAGGTGCTGGGCCCTGAGCTTCTACCCTGCGGAGATCACACTGACCTGGCAGCGGGATG  733
            ||||||.||||||||||||||||||||||||.||||||||||||||||||||||.|||||||||||||||||||
Sbjct  651  CCATGAGGCCACCCTGAGGTGCTGGGCCCTGGGCTTCTACCCTGCGGAGATCACGCTGACCTGGCAGCGGGATG  724

Query  734  GGGAGGACCAGACCCAGGACACGGAGCTCGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCG  807
            |||||||.||||||||||||||.|||||.||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  725  GGGAGGAACAGACCCAGGACACAGAGCTTGTGGAGACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCC  798

Query  808  GCTGTGGTGGTGCCTTCTGGACAGGAGCAGAGATACACCTGCCATGTGCAGCATGAGGGTTTGCCCAAGCCCCT  881
            |||||||||||||||.|||||.||||.|||||||||||.||||||||||||||.|||||..|||||.|||||||
Sbjct  799  GCTGTGGTGGTGCCTCCTGGAGAGGAACAGAGATACACATGCCATGTGCAGCACGAGGGGCTGCCCCAGCCCCT  872

Query  882  CACCCTGAGATGGGAGCCGTCTTCCCAGCCCACCATCCCCATCGTGGGCATCATTGCTGGCCTGGTTCTCTTTG  955
            ||.||||||||||||||.||||.|||||||||||||||||||||||||||||.||||||||||.|||.||.|||
Sbjct  873  CATCCTGAGATGGGAGCAGTCTCCCCAGCCCACCATCCCCATCGTGGGCATCGTTGCTGGCCTTGTTGTCCTTG  946

Query  956  GAGCTGTGATCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAGGAAGAGCTCAGATAGAAAAGGAGGGAGC  1029
            ||||||||.||||||||||||||||||||||||||||||||||||.||||||||||||||||||..||||||||
Sbjct  947  GAGCTGTGGTCACTGGAGCTGTGGTCGCTGCTGTGATGTGGAGGAAGAAGAGCTCAGATAGAAACAGAGGGAGC  1020

Query 1030  TACTCTCAGGCTGCAAG------CAGTG---------------------ACA--GTGCCCA-------------  1061
            |||||||||||||| ||      |||||                     |||  |||..||             
Sbjct 1021  TACTCTCAGGCTGC-AGCCTACTCAGTGGTCAGCGGAAACTTGATGATAACATGGTGGTCAAGCTTATTTCTCC  1093

Query 1062  -----GGGCTCT------GAT-------GTGTCTC-----TCACAG---CTT--------GTAAAGTG------  1095
                 |.|||||      |||       .||.|||     ||||||   |||        |.||.|||      
Sbjct 1094  TGGGGGTGCTCTTCCAAGGATATTTGGGCTGCCTCCGGAGTCACAGTGTCTTGGGCCGCCGGAAGGTGGGTGAC  1167

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 1168  ATGTGGATCTTGTTTTTTTTGTGGCTGTGGACATCTTTCAACACTGCCTTCTTGGCCTTGCAAAGCCTTCGCTT  1241

Query 1096  --------------------------------------------------------------------------  1095
                                                                                      
Sbjct 1242  TGGCTTCGGCTTTAGGAGGGGCAGGAGCTTCCTTCTTCGTTCTTGGCACCATCTTATGAAAAGGGTCCAGATTA  1315

Query 1096  -----------  1095
                       
Sbjct 1316  AGATTTTTGAC  1326