Construct: ORF ccsbBroad304_15443

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018179.1_s304c1, BRDN0000398975
Derived from:
ccsbBroadEn_15443
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HLA-A (3105)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15443
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3105 HLA-A major histocompatibility co... NM_002116.8 96.2% 93.4% (many diffs)
2 human 3105 HLA-A major histocompatibility co... NM_001242758.1 95.3% 90.6% (many diffs)
3 human 3106 HLA-B major histocompatibility co... NM_005514.8 88.5% 81.9% (many diffs)
4 human 3107 HLA-C major histocompatibility co... NM_002117.6 88.1% 80% (many diffs)
5 human 3107 HLA-C major histocompatibility co... NM_001243042.1 88.1% 80% (many diffs)
6 human 3133 HLA-E major histocompatibility co... NM_005516.6 85.6% 74.3% (many diffs)
7 human 3133 HLA-E major histocompatibility co... XM_017010809.2 84.2% 70.4% (many diffs)
8 human 3135 HLA-G major histocompatibility co... NM_002127.5 82.5% 74.7% (many diffs)
9 human 3135 HLA-G major histocompatibility co... XM_024446420.1 82.5% 74.7% (many diffs)
10 human 3134 HLA-F major histocompatibility co... NM_018950.2 81.5% 73.1% (many diffs)
11 human 3135 HLA-G major histocompatibility co... NM_001363567.1 81.4% 73.7% (many diffs)
12 human 3134 HLA-F major histocompatibility co... XM_011514564.1 80.2% 70.9% (many diffs)
13 human 3134 HLA-F major histocompatibility co... XM_017010813.1 79.4% 69.3% (many diffs)
14 human 3133 HLA-E major histocompatibility co... XM_017010807.1 76.1% 61.7% (many diffs)
15 human 3133 HLA-E major histocompatibility co... XM_017010808.1 76.1% 61.7% (many diffs)
16 human 3134 HLA-F major histocompatibility co... XM_017010812.1 73.4% 64% (many diffs)
17 human 3134 HLA-F major histocompatibility co... XM_017010810.1 71.1% 61.8% (many diffs)
18 human 3134 HLA-F major histocompatibility co... NM_001098479.2 69.9% 60.8% (many diffs)
19 human 3135 HLA-G major histocompatibility co... XM_017010817.1 60.5% 55% (many diffs)
20 human 3135 HLA-G major histocompatibility co... XM_017010818.1 60.5% 55% (many diffs)
21 human 3134 HLA-F major histocompatibility co... NM_001098478.2 59.4% 51.2% (many diffs)
22 human 3136 HLA-H major histocompatibility co... NR_001434.4 58.5% (many diffs)
23 human 3134 HLA-F major histocompatibility co... XM_017010815.1 54.4% 49.3% (many diffs)
24 human 3134 HLA-F major histocompatibility co... XM_017010814.1 47.6% 41.3% (many diffs)
25 human 3134 HLA-F major histocompatibility co... XR_001743373.1 29.1% (many diffs)
26 human 3134 HLA-F major histocompatibility co... XR_001743374.1 28% (many diffs)
27 human 3139 HLA-L major histocompatibility co... NR_027822.1 16% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1161
ORF length:
1095
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc cgtcatggcg ccccgaaccc tcgtcctgct actctcgggg gctctggccc
121tgacccagac ctgggcgggc tctcactcca tgaggtattt cttcacatcc gtgtcccggc
181ccggccgcgg ggagccccgc ttcatcgcag tgggctacgt ggacgacacg cagttcgtgc
241ggttcgacag cgacgccgcg agccagagga tggagccgcg ggcgccgtgg atagagcagg
301agggtccgga gtattgggac ggggagacac ggaaagtgaa ggcccactca cagactcacc
361gagtggacct ggggaccctg cgcggctact acaaccagag cgaggccggt tctcacaccg
421tccagaggat gtatggctgc gacgtggggt cggactggcg cttcctccgc gggtaccacc
481agtacgccta cgacggcaag gattacatcg ccctgaaaga ggacctgcgc ccttggaccg
541cggcggacat ggcagctcag accaccaagc acaagtggga ggcggcccat gtggcggagc
601agttgagagc ctacctggag ggcacgtgcg tggagtggct ccgcagatac ctggagaacg
661ggaaggagac gctgcagcgc acggacgccc ccaaaacgca tatgactcac cacgctgtct
721ctgaccatga agccaccctg aggtgctggg ccctgagctt ctaccctgcg gagatcacac
781tgacctggca gcgggatggg gaggaccaga cccaggacac ggagctcgtg gagaccaggc
841ctgcagggga tggaaccttc cagaagtggg cggctgtggt ggtgccttct ggacaggagc
901agagatacac ctgccatgtg cagcatgagg gtttgcccaa gcccctcacc ctgagatggg
961agccgtcttc ccagcccacc atccccatcg tgggcatcat tgctggcctg gttctctttg
1021gagctgtgat cactggagct gtggtcgctg ctgtgatgtg gaggaggaag agctcagata
1081gaaaaggagg gagctactct caggctgcaa gcagtgacag tgcccagggc tctgatgtgt
1141ctctcacagc ttgtaaagtg tnnccaactt tcttgtacaa agtggttggt aagcctatcc
1201ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg
1261ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)