Nucleotide Global Alignment
Description
- Query:
- ccsbBroad304_15672
- Subject:
- NR_040722.2
- Aligned Length:
- 5133
- Identities:
- 1524
- Gaps:
- 3609
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTGTGCTGGTGAATGTGAGTACAGGGAAGCAGCGGCCGCCATTTCAGGGAGCTTGTCGACGCTGTCGCAGGG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GTGGATCCTGAGCTGCCGAAGCCGCCGTCCTGCTCTCCCGCGTGGGCTTCTCTAATTCCATTGTTTTTTTTAGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTCTCTCGGGCCTAGCCGTCCTTGGAACCCGATATTCGGGCTGGGCGGTTCCGCGGCCTGGGCCTAGGGGCTTA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 ACAGTAGCAACAGAAGCGGCGGCGGCGGCAGCAGCAGCAGCAGCAGCAGCAATCTCTTCCCGAACACGAGCACC 296
Query 1 -------------------------------------ATGGCAGACGATATTGATATTGAAGCAATGCTTGAGG 37
|||||||||||||||||||||||||||||||||||||
Sbjct 297 ACAGGCGCCCGAAGGCCGGAACAGGCGTTTAGAGAAAATGGCAGACGATATTGATATTGAAGCAATGCTTGAGG 370
Query 38 CTCCTTACAAG--------------------------------------------------------------- 48
|||||||||||
Sbjct 371 CTCCTTACAAGAAGACTTGCCTAACGATATCTCACCTCTACTCCCATGAATTCACCTTTGATTCCAGTGTGAAC 444
Query 49 ----------AAGGATGAGAACAAGTTGAGCAGTGCCAACGGCCATGAAGAACGTAGCAAAAAGAGGAAAAAAA 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGTCAATCATAAGGATGAGAACAAGTTGAGCAGTGCCAACGGCCATGAAGAACGTAGCAAAAAGAGGAAAAAAA 518
Query 113 GCAAGAGCAGAAGTCGTAGTCATGAACGAAAGAGAAGCAAAAGTAAGGAACGGAAGCGAAGTAGAGACAGAGAA 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCAAGAGCAGAAGTCGTAGTCATGAACGAAAGAGAAGCAAAAGTAAGGAACGGAAGCGAAGTAGAGACAGAGAA 592
Query 187 AGGAAAAAGAGCAAAAGCCGTGAAAGAAAGCGAAGTAGAAGCAAAGAGAGGCGACGGAGCCGCTCAAGAAGTCG 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGGAAAAAGAGCAAAAGCCGTGAAAGAAAGCGAAGTAGAAGCAAAGAGAGGCGACGGAGCCGCTCAAGAAGTCG 666
Query 261 AGATCGAAGATTTAGAGGCCGCTACAGAAGTCCTTA-------------------------------------- 296
||||||||||||||||||||||||||||||||||||
Sbjct 667 AGATCGAAGATTTAGAGGCCGCTACAGAAGTCCTTACTCCGGACCAAAATTTAACAGTGCCATCCGAGGAAAGA 740
Query 297 ----------------------------CAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAGACAAGAGC 342
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 TTGGGTTGCCTCATAGCATCAAATTAAGCAGACGACGTTCCCGAAGCAAAAGTCCATTCAGAAAAGACAAGAGC 814
Query 343 CCTGTGAGAGAACCTATTGATAATTTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTGGC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CCTGTGAGAGAACCTATTGATAATTTAACTCCTGAGGAAAGAGATGCAAGGACAGTCTTCTGTATGCAGCTGGC 888
Query 417 GGCAAGAATTCGACCAAGGGATTTGGAAGAGTTTTTCTCTACAGTAGGAAAGGTTCGAGATGTGAGGATGATTT 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 GGCAAGAATTCGACCAAGGGATTTGGAAGAGTTTTTCTCTACAGTAGGAAAGGTTCGAGATGTGAGGATGATTT 962
Query 491 CTGACAGAAATTCAAGACGTTCCAAAGGAATTGCTTATGTGGAGTTCGTCGATGTTAGCTCAGTGCCTCTAGCA 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTGACAGAAATTCAAGACGTTCCAAAGGAATTGCTTATGTGGAGTTCGTCGATGTTAGCTCAGTGCCTCTAGCA 1036
Query 565 ATAGGATTAACTGGCCAACGAGTTTTAGGCGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAACAGAGC 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 ATAGGATTAACTGGCCAACGAGTTTTAGGCGTGCCAATCATAGTACAGGCATCACAGGCAGAAAAAAACAGAGC 1110
Query 639 TGCAGCAATGGCAAACAATTTACAAAAGGGAAGTGCTGGACCTATGAGGCTTTATGTGGGCTCATTACACTTCA 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TGCAGCAATGGCAAACAATTTACAAAAGGGAAGTGCTGGACCTATGAGGCTTTATGTGGGCTCATTACACTTCA 1184
Query 713 ACATAACTGAAGATATGCTTCGTGGGATCTTTGAGCCTTTTGGAAGAATTGAAAGTATCCAGCTGATGATGGAC 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 ACATAACTGAAGATATGCTTCGTGGGATCTTTGAGCCTTTTGGAAGAATTGAAAGTATCCAGCTGATGATGGAC 1258
Query 787 AGTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGA 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGTGAAACTGGTCGATCCAAGGGATATGGATTTATTACATTTTCTGACTCAGAATGTGCCAAAAAGGCTTTGGA 1332
Query 861 ACAACTTAATGGATTTGAACTAGCAGGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGA 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ACAACTTAATGGATTTGAACTAGCAGGAAGACCAATGAAAGTTGGTCATGTTACTGAACGTACTGATGCTTCGA 1406
Query 935 GTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACTGGAATTGATTTGGGAACAACTGGTCGTCTTCAG 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407 GTGCTAGTTCATTTTTGGACAGTGATGAACTGGAAAGGACTGGAATTGATTTGGGAACAACTGGTCGTCTTCAG 1480
Query 1009 TTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAAGCTCTACAGATGAGTGG 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TTAATGGCAAGACTTGCAGAGGGTACAGGTTTGCAGATTCCGCCAGCAGCACAGCAAGCTCTACAGATGAGTGG 1554
Query 1083 CTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACTG 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 CTCTTTGGCATTTGGTGCTGTGGCAGAATTCTCTTTTGTTATAGATTTGCAAACAAGACTTTCCCAGCAGACTG 1628
Query 1157 AAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTT 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 AAGCTTCAGCTTTAGCTGCAGCTGCCTCTGTTCAGCCACTTGCAACACAATGTTTCCAACTCTCTAACATGTTT 1702
Query 1231 AACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACA 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 AACCCTCAAACAGAAGAAGAAGTTGGATGGGATACCGAGATTAAGGATGATGTGATTGAAGAATGTAATAAACA 1776
Query 1305 TGGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTG 1378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 TGGAGGAGTTATTCATATTTATGTTGACAAAAATTCAGCTCAGGGCAATGTGTATGTGAAGTGCCCATCAATTG 1850
Query 1379 CTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTA 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851 CTGCAGCTATTGCTGCTGTCAATGCATTGCATGGCAGGTGGTTTGCTGGTAAAATGATAACAGCAGCATATGTA 1924
Query 1453 CCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCAAGTAGACGA-- 1524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925 CCTCTTCCAACTTACCACAACCTGTTTCCTGATTCTATGACAGCAACACAGCTACTGGTTCCAAGTAGACGATG 1998
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 1999 AAGGAAGATATAGTCCCTTATGTATATAGCTTTTTTTCTTTCTTGAGAATTCATCTTGAGTTATCTTTTATTTA 2072
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2073 GATAAAAATAAAGAGGCAAGGATCTACTGTCATTTGTATGCAATTTCCTGTTACCTTGAAAAAATAAAAATGTT 2146
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2147 AACAGGAATGCAGTGTGCTCATTCTCCCTAAATAGTAAATCCCACTGTATACAAAACTGTTCTCTTGTTCTGCC 2220
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2221 TTTTAAAATGTTCATGTAGAAAATTAATGAACTATAGGAATAGCTCTAGGAGAACAAATGTGCTTTCTGTAAAA 2294
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2295 AGGCAGACCAGGGATGTAATGTTTTTAATGTTTCAGAAGCCTAACTTTTTACACAGTGGTTACATTTCACATTT 2368
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2369 CACTAATGTTGATATTTGGCTGATGGTTGAGCAGTTTCTGAAATACACATTTAGTGTATGGAAATACAAGACAG 2442
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2443 CTAAAGGGCTGTTTGGTTAGCATCTCATCTTGCATTCTGATCAATTGGCAAGAAAGGGAGATTTCAAAATTATA 2516
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2517 TTTCTTGATGGTATCTTTTCAATTAATGTATCTGTAAAAGTTTCTTTGTAAATACTATGTGTTCTGGTGTGTCT 2590
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2591 TAAAATTCCAAACAAAATGATCCCTGCATTTCCTGAAGATGTTTAAACGTGAGAGTCTGGTAGGCAAAGCAGTC 2664
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2665 TGAGAAAGAAATAGGAAATGCAGAAATAGGTTTTGTCTGGTTGCATATAATCTTTGCTCTTTTTAAGCTCTGTG 2738
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2739 AGCTCTGAAATATATTTTTGGGTTACTTCAGTGTGTTTGACAAGACAGCTTGATATTTCTATCAAACAAATGAC 2812
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2813 TTTCATATTGCAACAATCTTTGTAAGAACCACTCAAATAAAAGTCTCTTAAAAAGGCCACAGGAGATCTTCATT 2886
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2887 TTTCAAATGTTTTAAAGTTACAGAAATTTGAGAACAGAATTAGCTTCTTTTAGTCTCAATTCAGTACTTGCCTC 2960
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 2961 TTGGGAAAATGTTCCGAGTCTGCGGAAACTTGCCCTCACGTTGTCCCCCATGAATTCCTTTATTCTATTAGAGT 3034
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3035 CTAGCCCTGTGTATTTTAGAAGAATGTATCAAAACTGAGGGGTTTACCAAAAAGAAAAGGAAACAGCCTGGCCT 3108
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3109 TAAAACCTGGGCATTCTTGGTCTCCTGCATTGTCTGGGCATATTTATGAAGAAATTTTCACCATTTACAATACA 3182
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3183 TACTTAACAAAATGGCTTAACTTCAAACTGGTTTCCAAAATTGATTTATATATTAATATATTAAATAAGGTGCA 3256
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3257 TATATTACTGTATTAAGGGGTTTTGAGCTTTCATACTAGTTGGGAAGCAAGCTGTCACCATTTATACTCAATTC 3330
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3331 TCTTCAACTGTTTATCTCTTGGTAAATCTTTTGAGTAGGAAATGCTGCTCCTAGCTTATCTTCAAATACTGAGT 3404
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3405 TCCTTACCTCATTTGTTCAACTTTTTTTTTTGTTAGCATTGAAGCACAAGTTTTACAGGCTTATTCAGAATTTC 3478
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3479 ATATCAGTCGTTTTGTTTGACATTTATCCCAATAATTGTTCTAGTGATTTAATTTGTATGGAAACTCCCAAGGT 3552
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3553 TCAATTTCTTTTTCTTTTTGAGATGGAGTCTTGCTCTTTGGCCCAGGCTGGAGTGCAGTGATGTGATCTCAGCT 3626
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3627 CCATCTCCCAGGTTCAAGCAATTCTCCCACCTCAGTCTCCTGAAGAGCTGGGACAGGTGCGCACCACCGTGCCC 3700
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3701 AGCTAATTTTTGTATTTTTAGCAGAGACGGTGTTAGCCCGGCTGGTCTCACACTGACCTCAAGTGATCTGTCCG 3774
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3775 CCTTGGCCTCCCAAAGTGCCGGGATTACAGGCATGAGCCACCGCGCCCAGCCTCATTGAAAATTTACTTTTCAA 3848
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3849 TACCAGACTGCAGAGTTCTTTGGGGCAGAGACACTCTGTCAGTGTGCTCTTTTTCCAAAGTATCTCCTGCTATC 3922
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3923 AGTTTTTCCCCTTGAACCAAGTCTTCCTAACAAATTTGTTGTGTCATTGCTTTCTAGGGAACTGGACCAGCAAA 3996
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 3997 TGTGGCCTTTAGTGGTTAATCTCATCTGTGCCAAAATTTAGTTGCTACCAGAGTGAAATTTGGTGTGTAAATAA 4070
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4071 TGTTCAGAGGAAATGTGGTTGGAGTGTAGTAACTTGAATAGTGTCGTGCATAGAAAACAGCTCATTCTGAGTGA 4144
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4145 AACTGTTTATGTCCAATCAGTTCCTGAGTCAGCATCCCACTGGTTCGAAAATCTGTAACTAATCTGGTAATGTC 4218
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4219 CTTAATTTCCTCCTGCCTGTCAGTGTTCCAAAGTGTTCATCTAGTTTTCTTTTATCTTTATAATAATTACTACC 4292
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4293 ATCTTTGAAAGTTCTGTTTAAGAAATGCTTAATGGGCAATGCGGGTTAGTAACTCCAGGGTCTGCGTGGCCTGG 4366
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4367 GCAGGTGAGATGGACAACTGCCTCATTACAGAAGCTTTTTATCATCAAACTAGTAAGTTTTGTGGAGGGCAAGC 4440
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4441 TATATAGATTGTTGATGAGTGGTTAGAAAATCATCTGGAATTTAGCCAGTTGAGAAGCTACAGAAGTTTCTATT 4514
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4515 TTTTTTTACAGTGGATGAACTGTTTTGCTTTTTCTGATAAAGCCACTAGGTATATCTAAATAACAACCTCGGGC 4588
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4589 TGGACGTGGTGCCTTATGCCTGTATATGTGAACACTGGGAGGCGGAGGCGGGTGGATCATGAGGTCAAGAGTTT 4662
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4663 GAGACCAGCCTGGCCAACACAGTGAAACCCCGTCTCTACTAAGAATACAAATTTTTTTTGTTTTGAGACAGAGT 4736
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4737 CTCGCTCTGTCGCCCAGGCTGGAGTGCAATGGCTCGATCTCAGCTCACTGCAACCTCCACCTTCTGGGTTCAAG 4810
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4811 CGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGAATACAGGCGCGTGTCAACACACCCGGCTTAAGTTTTTGT 4884
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4885 ATTTTTAGTAGAGACGGGGTGTCACCGTGTTACCCAAGATGGTCTCCATCTCCTGACCTTGTGATCCACCAGCC 4958
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 4959 TTTGCCTCCCAAAGTGCTGGGATTACAGGCATAAGCCACCGCGCCCAGCCTAACAATACAAAATTTAGCTAGGC 5032
Query 1525 -------------------------------------------------------------------------- 1524
Sbjct 5033 ATGGTGGCACGTGCCTGTTATCACAGCTACTCGGGAGGCTGAGGCAGGAGAAACGCTTGAACACAGGAGGCAGA 5106
Query 1525 --------------------------- 1524
Sbjct 5107 AGTTGCGGTAAGCCGAGATCGTGCCAC 5133
